Home Crystal structure of (2,4-dimethoxybenzyl)triphenylphosphonium trifluoroacetate — trifluoroacetic acid (1/1), C31H27F6O6P
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Crystal structure of (2,4-dimethoxybenzyl)triphenylphosphonium trifluoroacetate — trifluoroacetic acid (1/1), C31H27F6O6P

  • Jireh B.M. Smit , Charlene Marais , Frederick P. Malan EMAIL logo and Barend C.B. Bezuidenhout
Published/Copyright: March 13, 2019

Abstract

C31H27F6O6P, triclinic, P1̄ (no. 2), a = 8.0017(2) Å, b = 11.1702(3) Å, c = 17.8353(4) Å, α = 104.9000(10)°, β = 96.5360(10)°, γ = 97.7380(10)°, V = 1508.05(7) Å3, Z = 2, Rgt(F) = 0.0354, wRref(F2) = 0.0896, T = 150(2) K.

CCDC no.: 1897228

The asymmetric unit of the title crystal structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colourless block
Size:0.40 × 0.23 × 0.17 mm
Wavelength:Cu Kα radiation (1.54178 Å)
μ:1.53 mm−1
Diffractometer, scan mode:Bruker APEX-II, φ and ω
θmax, completeness:72.37°, 94%
N(hkl)measured, N(hkl)unique, Rint:49829, 5133, 0.035
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 4610
N(param)refined:468
Programs:Bruker [1], SHELX [2], [3], Mercury [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
P10.06949(5)0.78918(3)0.21772(2)0.02632(11)
O10.03707(15)1.06763(10)0.34593(6)0.0400(3)
O20.37751(16)1.08918(11)0.59293(6)0.0429(3)
O50.75905(17)0.33638(11)0.31999(8)0.0502(3)
H50.814(3)0.320(2)0.2597(15)0.075*
O60.8437(2)0.54398(13)0.35006(10)0.0679(4)
C1−0.03351(19)0.81364(15)0.30501(9)0.0316(3)
H1A−0.12930.85900.29720.038*
H1B−0.08280.73040.31000.038*
C20.07919(19)0.88550(14)0.38097(9)0.0297(3)
C30.1485(2)0.82724(15)0.43441(9)0.0335(3)
H30.12670.73810.42250.040*
C40.2484(2)0.89640(15)0.50453(9)0.0366(4)
H40.29500.85520.54040.044*
C50.2799(2)1.02649(15)0.52208(9)0.0333(3)
C60.2123(2)1.08769(14)0.47020(9)0.0321(3)
H60.23441.17680.48240.039*
C70.11191(19)1.01646(14)0.40035(9)0.0309(3)
C80.0908(3)1.19879(17)0.35556(12)0.0556(5)
H8A0.21581.21780.36350.083*
H8B0.04881.24780.40130.083*
H8C0.04471.22060.30850.083*
C90.4233(2)1.22261(16)0.60905(10)0.0449(4)
H9A0.48451.24240.56800.067*
H9B0.49691.25630.66010.067*
H9C0.31971.26060.61010.067*
C100.19682(18)0.66755(13)0.21458(8)0.0277(3)
C110.1486(2)0.56850(15)0.24577(11)0.0408(4)
H110.04610.56310.26780.049*
C120.2509(2)0.47789(17)0.24452(12)0.0494(5)
H120.21850.41040.26600.059*
C130.3997(2)0.48451(16)0.21233(10)0.0410(4)
H130.47010.42250.21260.049*
C140.4459(2)0.58100(15)0.17987(9)0.0352(4)
H140.54740.58480.15700.042*
C150.34510(19)0.67248(14)0.18048(9)0.0310(3)
H150.37680.73860.15770.037*
C160.20992(18)0.92615(13)0.21348(9)0.0286(3)
C170.3580(2)0.97019(14)0.26932(9)0.0331(3)
H170.38000.93020.30950.040*
C180.4720(2)1.07237(15)0.26554(11)0.0404(4)
H180.57251.10290.30340.048*
C190.4399(2)1.13031(17)0.20663(12)0.0469(4)
H190.51871.20040.20430.056*
C200.2944(2)1.08674(17)0.15146(12)0.0472(4)
H200.27341.12700.11130.057*
C210.1787(2)0.98458(15)0.15435(10)0.0366(4)
H210.07860.95460.11620.044*
C22−0.10081(18)0.74348(14)0.13589(9)0.0302(3)
C23−0.1226(2)0.62720(15)0.08078(9)0.0361(4)
H23−0.04560.57080.08530.043*
C24−0.2574(2)0.59387(18)0.01919(10)0.0456(4)
H24−0.27330.5140−0.01830.055*
C25−0.3689(2)0.67595(19)0.01180(11)0.0471(4)
H25−0.45990.6529−0.03110.056*
C26−0.3480(2)0.79176(18)0.06683(11)0.0437(4)
H26−0.42480.84800.06170.052*
C27−0.2155(2)0.82591(16)0.12934(10)0.0373(4)
H27−0.20240.90480.16760.045*
C300.7771(2)0.44883(16)0.36147(11)0.0400(3)
F1a0.7135(8)0.1103(5)0.0367(3)0.0834(16)
F2a0.7951(8)0.2615(7)−0.0037(5)0.0502(13)
F3a0.9784(9)0.1835(9)0.0567(5)0.093(3)
F4b0.7305(10)0.5663(5)0.4853(4)0.096(2)
F5b0.5160(4)0.4666(6)0.40791(18)0.0952(19)
F6b0.6833(11)0.3743(3)0.4649(3)0.098(2)
C29Aa0.8671(14)0.2222(12)0.0676(10)0.0472(14)
C31Aa0.7242(8)0.4582(4)0.4419(3)0.0400(3)
F1Ac0.8189(12)0.1002(4)0.0515(3)0.109(2)
F2Ac0.8006(11)0.2598(9)0.0086(6)0.105(3)
F3Ac1.0280(8)0.2465(9)0.0677(5)0.114(3)
F4Ad0.6921(12)0.5674(5)0.4755(4)0.098(3)
F5Ad0.5769(10)0.3735(6)0.4324(4)0.129(5)
F6Ad0.8293(12)0.4279(8)0.4904(3)0.135(3)
C29Bc0.8284(12)0.2159(10)0.0567(8)0.0472(14)
C31Bc0.6683(7)0.4599(4)0.4292(3)0.0400(3)
O3Ae0.87085(17)0.26823(14)0.19818(9)0.0476(4)
O4Ae0.7084(2)0.37043(16)0.13586(9)0.0637(5)
C28Ae0.8026(2)0.2969(2)0.13907(12)0.0382(4)
O4Bf0.787(4)0.344(3)0.178(2)0.0637(5)
O3Bf0.866(3)0.152(3)0.1747(14)0.0476(4)
C28Bf0.830(5)0.236(4)0.148(3)0.0382(4)
  1. aOccupancy: 0.465(8), bOccupancy: 0.530(8), cOccupancy: 0.544(8), dOccupancy: 0.470(8), eOccupancy: 0.950(2), fOccupancy: 0.050(2).

Source of material

All reagents were obtained from Sigma-Aldrich and used without further purification. 2,4-Dimethoxybenzyl alcohol (0.42 g, 2.5 mmol, 1 eq.) was added to a solution of triphenylphosphine (1.31 g, 5 mmol, 2 eq.) in dry toluene (5 mL) at 0 °C under an argon atmosphere. Trifluoroacetic acetic anhydride (0.35 mL, 2.5 mmol, 1 eq.) in dry toluene (5 mL) was subsequently added drop-wise to the reaction mixture. The reaction mixture was allowed to reach room temperature, after which it was heated to and kept at 60 °C for 16 hours. Precipitation with the addition of Et2O (100 mL), followed by recrystallization from DCM, gave the title compound (85%, 1.10 g), as light yellow block-like crystals: 1H-NMR (600 MHz, CDCl3) δH [ppm] 7.78 (3H, br t, J = 7.5 Hz, H-4′), 7.63 (6H, ddd, J = 7.7, 7.5 Hz, JPH = 3.6 Hz, H-3′ and H-5′), 7.48 (6H, br dd, JPH = 12.3 Hz, J = 7.7 Hz, H-2′ and H-6′), 6.91 (1H, dd, J = 8.4 Hz, JPH = 2.8 Hz, H-6), 6.33 (1H, dd, J = 8.4, 2.1 Hz, H-5), 6.19 (1H, d, J = 2.1 Hz, H-3), 4.45 (2H, d, JPH = 13.0 Hz, -CH2-), 3.37 (3H, s, -OMe), 3.19 (3H, s, -OMe); 13C-NMR (151 MHz, CDCl3) δC [ppm] 162.9 (d, JPC = 3.3 Hz, C-4), 160.9 (q, JFC = 36.7 Hz, -C=O), 158.8 (d, JPC = 4.8 Hz, C-2), 135.7 (d, JPC = 2.5 Hz, C-4′), 134.4 (d, JPC = 9.6 Hz, C-2′ and C-6′), 132.8 (d, JPC = 5.4 Hz, C-6), 130.7 (d, JPC = 12.4 Hz, C-3′ and C-5′), 118.7 (d, JPC = 85.2 Hz, C-1′), 116.7 (q, JFC = 290.8 Hz, -CF3), 107.1 (d, JPC = 8.9 Hz, C-1), 105.7 (s, C-5), 99.0 (s, C-3), 56.0 (4-OMe), 55.3 (2-OMe), 25.6 (d, JPC = 49.5 Hz, -CH2-); 31P-NMR (151 MHz, CDCl3) δP [ppm] 19.7 (s, -PPh3); 19F-NMR (151 MHz, CDCl3) δF [ppm] −81.90 (s, -CF3); HRMS (ES): m/z [M]+ required for [C9H11O2PPh3]+: 413.1670, found 413.1663.

Experimental details

The structure was solved by direct methods with the SHELXS-97 program [2], using the ShelXle [3] interface. Molecular graphics were done using ORTEP-3 [4]. All hydrogen atoms were placed in geometrically idealized positions and constrained to ride on their parent atoms. The C—Haromatic and C—Hmethyl bond distances were restrained to 0.95 Å and 0.95 Å with Uiso(Haromatic) = 1.2Ueq and Uiso(Hmethyl) = 1.5Ueq of the parent atom, respectively. The CF3 groups appear disordered (Table 2).

Comment

Since their discovery, organic phosphonium cationic compounds have found widespread use in synthesis as phase transfer catalysts [5] and as reagents for Wittig [6] and Appel [7] reactions. In terms of biological applications, a range of phosphonium cations have also been found active as anti-bacterial agents against several different types of microorganisms. [8] The multi-functional use of these quaternary phosphorous compounds therefore continues to attract interest into their syntheses and applications.

The title complex crystallized in the triclinic space group P1̄ and Z = 2. A single cation-anion pair, along with a hydrogen-bonded solvent molecule is contained within the asymmetric unit. The phosphonium cation exhibits a slightly distorted tetrahedral geometry with typical C—P—C bond angles of 105.69(7)° – 113.65(7)°, where both the largest and smallest angle is enclosed between the alkyl and a phenyl group. A slightly longer bond of P1—C1 = 1.8198(16) Å is observed, which corresponds to the bound alkyl group, whereas slightly shorter bonds were observed for the bound phenyl groups (1.7956(16) Å – 1.7983(15) Å). The least-squares planes defined by the carbon atoms of the phenyl moieties intersect at angles of 63.53(17)°, 63.89(16)°, and 84.16(17)°. Interestingly, face-to-face π–π interactions between the 2,4-dimethoxyarene ring systems is observed with a centroid-to-centroid distance of 3.631 Å. In addition, alternating edge-to-edge π–π interactions are observed between the same ring systems at a distance of 5.089 Å, at an angle of ca. 46.9°. The disordered moiety of the trifluoroacetato anion forms a strong O5—H5⋯O3 hydrogen bond (H5—O3 = 2.429 Å), at an angle of ca. 155°. The fluorine atoms of the CF3-group of both the acetate and acetic acid molecules are disordered over two unique positions which have been modelled with occupation factors of 0.456 and 0.530, respectively. All other geometric parameters are within the expected ranges.

Acknowledgements

Financial assistance from the South African National Research Foundation (SA NRF) and The University of the Free State (UFS) is gratefully acknowledged.

References

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Received: 2018-12-09
Accepted: 2019-02-14
Published Online: 2019-03-13
Published in Print: 2019-06-26

© 2019 Jireh B.M. Smit et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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  52. Crystal structure of 2-chloro-4-(prop-2-yn-1-yloxy)-6-(thiophen-2-yl)-1,3,5-triazine, C10H6ClN3OS
  53. The crystal structure of 3-butyl-1-methyl-1H-imidazol-3-ium catena-poly[tris(μ2-bromido-κ2Br:Br)lead(II)], C8H15Br3N2Pb
  54. Crystal structure of 3-(5-amino-1H-1,2,4-triazol-3-yl)-1-(piperidin-1-yl)propan-1-one, C10H17N5O
  55. Crystal structure of aqua-2,2′,2′′-(((nitrilo-κN-tris(ethane-2,1-diyl))tris(azanylylidene-κ3N′,N′′,N′′′))tris(methanylylidene))tris(4-chlorophenolato-κ3O,O′,O′′)neodymium(III), C27H26Cl3N4NdO4
  56. Crystal structure of dichlorido-(μ2-2,2′-(diazene-1,2-diyl)bis(benzen-1-ido)-κ2C:C′)dimercury(II), C12H8Cl2Hg2N2
  57. Crystal structure of (3E,5E)-3,5-bis(4-cyanobenzylidene)-1-((4-fluorophenyl)sulfonyl)piperidin-4-one, C27H18FN3O3S
  58. Crystal structure of dichlorido(pyridine-κN)(2,4,6-tri-2-pyridyl-1,3,5-triazine-κ3N2,N1,N6)nickel(II), C23H17Cl2N7Ni
  59. Redetermination of the crystal structure of tetrakis(4-chlorobenzyl)tin(IV), C28H24Cl4Sn
  60. The crystal structure of 2,6-bis(pyridin-1-ium-3-ylmethyl)hexahydro-4,8-ethenopyrrolo-[3,4-f] isoindole-1,3,5,7-tetrone tetrachloridocuprate(II) monohydrate, C24H24Cl4CuN4O5
  61. Crystal structure of cyclo-[octaaqua-tetrakis(μ2-5,5′-(1H-imidazole-4,5-diyl)bis(tetrazol-2-ido)-κ4N,N′,N′′,N′′′)tetramagnesium(II)], C20H24N40O8Mg4
  62. The crystal structure of a matrine derivative, 13-(4-Cl-pyrrole)-matrine, C18H26ClN4O
  63. Crystal structure of (dibenzyl sulphoxide-κO)bis(2-chlorobenzyl-κC1)dichloridotin(IV), C28H26Cl4OSSn
  64. Crystal structure of catena-poly[(μ2-azido-κ2N:N)(μ2-4-cyanobenzoato-κ2O:O′)-(μ2-methanol-κ2O:O)copper(II)], C9H8CuN4O3
  65. Crystal structure of 1,1′-dibenzyl-3,3′-dicyano-1,1′,4,4′-tetrahydro-4,4′-bipyridine, C26H22N4
  66. Crystal structure of (2-bromobenzyl)((1-bromonaphthalen-2-yl)methyl)sulfane, C18H14Br2S
  67. Crystal structure of 2-(4-ammoniocyclohexyl)-3-(pyridin-2-yl)imidazo[1,5-a]pyridin-2-ium 2-[(2-carboxylatophenyl)disulfanyl]benzoate dihydrate, [C18H22N4][C14H8O4S2] ⋅ 2H2O
  68. Crystal structure of (E)-N-((3R,5S,10S, 13S,14S,17S)-17-((S)-1-(dimethylamino)ethyl)-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-3-yl)-2-methylbut-2-enamide – water – methanol (1/1/1), C29H54N2O3
  69. Crystal structure of methyl 2-(4-(3-(2,4-difluorophenyl)pyrazolo[1,5-a]pyrimidin-6-yl)phenyl)acetate, C21H15F2N3O2
  70. Crystal structure of poly[triaqua-(μ4-benzene-1,3,5-tricarboxylato-κ5O1,O2:O3:O4:O5)-(μ2-5-(3-pyridyl)tetrazolato-κ2N1:N3)dizinc(II)], C15H13N5O9Zn2
  71. Crystal structure of N-(3-methylphenyl)(propan-2-yloxy)carbothioamide, C11H15NOS
  72. Crystal structure of poly[(μ2-1,3-bis(imidazol-1-ylmethyl)benzene-κ2N:N′)(nitrato-κ1O)cadmium(II)] — water (2/1), C28H32CdN10O7
  73. Crystal structure of 4-phenyl-2,4-dihydro-3H-1,2,4-triazole-3-thione, C8H7N3S
  74. Crystal structure of benzyltrichloridobis(1H-pyrazole-κ2N)tin(IV), C13H15Cl3N4Sn
  75. Crystal structure of chlorido-4-fluorobenzyl-bis(2-methylquinolin-8-olato-κ2N,O)tin(IV), C27H22ClFN2O2Sn
  76. Crystal structure of tetrakis(O,O′-diisopropyldithiophosphato-κ2S,S′)-(μ2-1,2-bis(4-pyridylmethylene)hydrazine-κ2N:N′)zinc(II), C36H66N4O8P4S8Zn2
  77. Crystal structure of tetrabutylammonium 4,4-oxydibenzoate – boric acid – water (1/2/6) C46H98B2N2O17
  78. Redetermination of the crystal structure of catena-poly[[tribenzyltin(IV)]-(μ2-pyridine-4-carboxylato-κ2N:O)], C27H25NO2Sn
  79. The synthysis and crystal structure of cyclohexyl 5-amino-1-(2,6-dichloro-4-(trifluoromethyl)phenyl)-4-((trifluoromethyl)sulfinyl)-1H-pyrazole-3-carboxylate, C18H15N3Cl2F6O3S
  80. The crystal structure of 5,7-bis(2-hydroxyethoxy)-2-phenyl-4H-chromen-4-one, C19H18O6
  81. Synthesis and crystal structure of (±)-Ethyl 5′-(difluoromethyl)-2-oxo-4′,5′-dihydrospiro[indoline-3,3′-pyrazole]-4′-carboxylate, C14H13F2N3O3
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