Home Crystal structure of 2-hydroxy-1-tosylindolin-3-yl- 2-naphthoate, C26H21N1S1O5
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Crystal structure of 2-hydroxy-1-tosylindolin-3-yl- 2-naphthoate, C26H21N1S1O5

  • Zhenguo Zhang , Changchun Yuan ORCID logo , Miao-Miao Xun and Kai Fu ORCID logo EMAIL logo
Published/Copyright: October 24, 2022

Abstract

C26H21N1S1O5, monoclinic, P21/c (no. 14), a = 7.623(3) Å, b = 25.617(12) Å, c = 11.775(5) Å, β = 100.073(8)°, V = 2264.2(17) Å3, Z = 4, R gt (F) = 0.0470, wR ref (F 2) = 0.1365, T = 298(2) K.

CCDC no.: 2212038

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colorless block
Size: 0.23 × 0.20 × 0.12 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 0.18 mm−1
Diffractometer, scan mode: Bruker APEX, φ and ω
θ max, completeness: 26.3°, >99%
N(hkl)measured, N(hkl)unique, R int: 12,292, 4587, 0.032
Criterion for I obs, N(hkl)gt: I obs > 2σ(I obs), 3363
N(param)refined: 298
Programs: Shelx [1], Olex2 [2], CrysAlis PRO [3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z U iso*/U eq
S1 0.20654 (6) 0.42815 (2) 0.62890 (4) 0.05140 (17)
N1 0.08166 (19) 0.44465 (5) 0.72203 (12) 0.0479 (4)
O1 −0.19596 (16) 0.36414 (4) 0.77700 (10) 0.0492 (3)
O2 −0.3400 (2) 0.35664 (5) 0.92738 (12) 0.0662 (4)
O3 −0.18949 (17) 0.49181 (5) 0.66884 (10) 0.0601 (4)
H3A −0.159611 0.503996 0.610708 0.090*
O4 0.1227 (2) 0.45117 (5) 0.52270 (12) 0.0734 (5)
O5 0.38630 (18) 0.44113 (6) 0.67757 (15) 0.0741 (4)
C1 −0.2778 (2) 0.33663 (7) 0.85025 (14) 0.0473 (4)
C2 −0.2815 (2) 0.27996 (7) 0.82437 (14) 0.0448 (4)
C3 −0.3489 (2) 0.24645 (7) 0.89787 (14) 0.0464 (4)
H3B −0.389240 0.259928 0.961968 0.056*
C4 −0.3577 (2) 0.19178 (7) 0.87752 (14) 0.0455 (4)
C5 −0.4237 (3) 0.15641 (7) 0.95265 (16) 0.0565 (5)
H5B −0.462332 0.169033 1.018095 0.068*
C6 −0.4312 (3) 0.10409 (8) 0.93024 (19) 0.0675 (6)
H6A −0.474571 0.081447 0.980520 0.081*
C7 −0.3742 (3) 0.08438 (9) 0.8324 (2) 0.0750 (6)
H7A −0.380589 0.048709 0.817562 0.090*
C8 −0.3091 (3) 0.11710 (8) 0.75829 (19) 0.0715 (6)
H8A −0.271584 0.103459 0.693347 0.086*
C9 −0.2977 (3) 0.17186 (7) 0.77908 (15) 0.0525 (5)
C10 −0.2290 (3) 0.20742 (8) 0.70580 (16) 0.0614 (5)
H10A −0.188766 0.194703 0.640962 0.074*
C11 −0.2201 (3) 0.25927 (7) 0.72729 (15) 0.0534 (5)
H11A −0.173156 0.281482 0.677762 0.064*
C12 0.1302 (3) 0.44137 (7) 0.84494 (15) 0.0485 (4)
C13 0.2956 (3) 0.45032 (8) 0.9137 (2) 0.0710 (6)
H13A 0.396201 0.457214 0.881538 0.085*
C14 0.3039 (4) 0.44852 (9) 1.0319 (2) 0.0869 (8)
H14A 0.413218 0.453302 1.079937 0.104*
C15 0.1554 (4) 0.43988 (8) 1.08009 (19) 0.0795 (8)
H15A 0.164693 0.440005 1.159897 0.095*
C16 −0.0081 (3) 0.43097 (7) 1.01112 (16) 0.0637 (6)
H16A −0.108688 0.425154 1.044049 0.076*
C17 −0.0203 (3) 0.43081 (6) 0.89223 (14) 0.0477 (4)
C18 −0.1754 (2) 0.42023 (6) 0.79728 (14) 0.0460 (4)
H18A −0.285486 0.436547 0.812048 0.055*
C19 −0.1162 (2) 0.44213 (7) 0.68971 (14) 0.0449 (4)
H19A −0.152283 0.419129 0.623230 0.054*
C20 0.2708 (3) 0.32747 (7) 0.69876 (17) 0.0585 (5)
H20A 0.321150 0.341193 0.770168 0.070*
C21 0.2714 (3) 0.27410 (8) 0.6793 (2) 0.0700 (6)
H21A 0.321934 0.252058 0.738908 0.084*
C22 0.1990 (3) 0.25287 (8) 0.5740 (2) 0.0722 (6)
C23 0.1206 (3) 0.28589 (9) 0.4879 (2) 0.0758 (6)
H23A 0.069174 0.272022 0.416909 0.091*
C24 0.1164 (3) 0.33910 (8) 0.50450 (17) 0.0617 (5)
H24A 0.061833 0.360817 0.445430 0.074*
C25 0.1940 (2) 0.35997 (7) 0.60985 (15) 0.0456 (4)
C26 0.2100 (4) 0.19435 (9) 0.5533 (3) 0.1151 (11)
H26A 0.268659 0.177638 0.622601 0.173*
H26B 0.091952 0.180390 0.531875 0.173*
H26C 0.276226 0.188146 0.492393 0.173*

Source of material

The title compound was be synthesized using trans-2-hydroxy-1-tosylindoline-3-ammonium bromide [4], [5], [6] and commercial available 2-naphthoic acid stirred at 373 K for 8 h in ethyl acetate solution. The solution was cooled to room temperature, which was purified by column chromatography on silica gel (petroleum ether/ethyl acetate = 10/1) to afford the product as a white solid. The crude product was recrystallized from ethyl acetate.

Experimental details

All H atoms were positioned geometrically and treated as riding, with C–H bond lengths constrained to 0.96° for methyl H atoms, 0.93° for phenyl H atoms, 0.82° for hydroxyl H atoms, with U iso(H) = 1.2 U eq(C) for CH groups, and hydroxyl atoms, and phenyl H atoms, and 1.5U eq(C) for methyl H atoms.

Comment

Indoles are structural scaffolds frequently found in important pharmaceuticals and biologically active natural compounds. For example, 1H-indol-3-yl acetates are important materials for the preparation of biochemical reagents for the identification of campylobacte [7]. There is one molecule in the asymmetric unit of the title structure (see the figure). Bond lengths and angles are all in the expected ranges. In the crystal structure, the crystal packing is stabilized in layers and held together by van der Waals interactions.


Corresponding author: Kai Fu, School of Chemical Engineering and Technology, North University of China, Taiyuan, Shanxi Province, P. R. China, E-mail:

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: Applied Basic Research Programs of Shanxi Province of China (Grant No. 201901D211220).

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

References

1. Sheldrick, G. M. Shelxtl – integrated space-group and crystal-structure determination. Acta Crystallogr. 2015, A71, 3–8; https://doi.org/10.1107/s2053273314026370.Search in Google Scholar PubMed PubMed Central

2. Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K., Puschmann, H. Olex2: a complete structure solution, refinement and analysis program. J. Appl. Crystallogr. 2009, 42, 339–341; https://doi.org/10.1107/s0021889808042726.Search in Google Scholar

3. CrysAlisPRO . Agilent Technologies Version 1.171.37.35; Agilent Technologies. Santa Clara, CA, USA, 2014.Search in Google Scholar

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6. Takumi, A., Sakura, A., Masami, O., Masato, T., Koji, Y. Revisiting furodiindolines: one-pot synthesis of furodiindolines using indole 2,3-epoxide surrogates and their synthetic applications. Org. Lett. 2019, 19, 3367–3371; https://doi.org/10.1021/acs.orglett.9b01108.Search in Google Scholar PubMed

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Received: 2022-09-09
Accepted: 2022-10-10
Published Online: 2022-10-24
Published in Print: 2022-12-16

© 2022 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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