Home Crystal structure of [diaqua-bis(2-((1H-tetrazol-1-yl)methyl)-5-carboxy-1H-imidazole-4-carboxylato-κ2 N,O) manganese(II)] dihydrate, C14H18MnN12O12
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Crystal structure of [diaqua-bis(2-((1H-tetrazol-1-yl)methyl)-5-carboxy-1H-imidazole-4-carboxylato-κ2 N,O) manganese(II)] dihydrate, C14H18MnN12O12

  • Ya-Ping Zhang ORCID logo EMAIL logo and Zu-Tian Li
Published/Copyright: August 29, 2022

Abstract

C14H18MnN12O12, monoclinic, P21/c (no. 14), a = 9.333(7) Å, b = 19.038(13) Å, c = 7.042(5) Å, β = 111.989(10)°, V = 1160.2(14) Å3, Z = 2, Rgt (F) = 0.0301, wRref (F 2) = 0.0809, T = 293(2) K.

CCDC no.: 2190558

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Yellow block
Size: 0.21 × 0.19 × 0.15 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 0.66 mm−1
Diffractometer, scan mode: Bruker D8 VENTURE PHOTON, φ and ω
θ max, completeness: 26.0°, >99%
N(hkl)measured , N(hkl)unique, R int: 6299, 2274, 0.029
Criterion for I obs, N(hkl)gt: I obs > 2 σ(I obs), 2044
N(param)refined: 179
Programs: SHELX [1], Bruker [2, 3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z U iso*/U eq
Mn1 0.000000 0.000000 0.500000 0.02757 (12)
N1 0.21062 (13) 0.06186 (7) 0.66507 (18) 0.0249 (3)
N2 0.42115 (14) 0.12472 (7) 0.8164 (2) 0.0262 (3)
H2 0.494239 0.154470 0.833242 0.031*
N3 0.16252 (15) 0.20702 (7) 0.4187 (2) 0.0286 (3)
N4 0.21137 (18) 0.27273 (8) 0.4839 (2) 0.0398 (3)
N5 0.0882 (2) 0.31075 (8) 0.4443 (3) 0.0458 (4)
N6 −0.04050 (18) 0.27110 (9) 0.3552 (3) 0.0452 (4)
O1 0.07674 (12) −0.04037 (6) 0.81637 (17) 0.0335 (3)
O2 0.25555 (13) −0.02912 (7) 1.13221 (17) 0.0388 (3)
O3 0.48860 (14) 0.04431 (7) 1.31055 (17) 0.0377 (3)
H3 0.411187 0.020700 1.251256 0.057*
O4 0.62014 (14) 0.12876 (7) 1.23134 (19) 0.0428 (3)
O5 −0.13607 (13) 0.08068 (6) 0.57979 (18) 0.0358 (3)
H5A −0.218308 0.093900 0.483501 0.054*
H5B −0.163958 0.071480 0.678971 0.054*
C1 0.19466 (18) −0.01250 (8) 0.9439 (2) 0.0274 (3)
C2 0.27247 (16) 0.04369 (8) 0.8681 (2) 0.0238 (3)
C3 0.40436 (16) 0.08279 (8) 0.9648 (2) 0.0250 (3)
C4 0.51267 (17) 0.08670 (8) 1.1807 (2) 0.0300 (3)
C5 0.30271 (16) 0.11098 (8) 0.6394 (2) 0.0251 (3)
C6 0.27201 (18) 0.14902 (8) 0.4421 (2) 0.0305 (3)
H6A 0.368200 0.167492 0.439746 0.037*
H6B 0.229701 0.116561 0.328516 0.037*
C7 0.0085 (2) 0.20726 (9) 0.3406 (3) 0.0381 (4)
H7 −0.054156 0.168612 0.285044 0.046*
O6 0.62761 (17) 0.21592 (8) 0.7621 (3) 0.0739 (5)
H6C 0.723143 0.209969 0.786431 0.111*
H6D 0.623153 0.260479 0.754741 0.111*

Source of material

All reagents used were purchased from commercial sources and used without further purification. An aqueous solution (4 mL) of MnCl2·4H2O (0.05 mmol) was added dropwise to a methanol solution (2 mL) of 2-(1H-tetrazol-1-methyl)-1H-imidazole-4,5-dicarboxylic acid (0.05 mmol, H3tmidc). The resulting solution was placed in a 25 mL Teflon-lined stainless steel reactor, which was sealed and heated to 333 K for 24 h. After the mixture was cooled to room temperature, light-yellow crystals of the title compound were obtained (yield 48%, based H3tmidc).

Experimental details

Hydrogen atoms on carbon and nitrogen atoms were positioned geometrically and refined as riding atoms, with C–H = 0.97 (CH2) or 0.93 Å (aromatic) and N–H = 0.86 Å. The hydrogen atom of the carboxy group of H2tmidc was refined as riding atoms, with O–H = 0.82 Å. Hydrogen atoms of the water molecule were located in a difference Fourier map and O–H distance were constrained to 0.85 Å. Hydrogen atoms were refined with U iso(H) = 1.2 U eq(C, N) or 1.5 U eq(O).

Comment

N-heterocyclic carboxylic acids have been often used in the synthesis of coordination compounds (CPs) since they not only contain O donors but also N donors, which have abundant coordination modes [4], [5], [6], [7], [8]. Many CPs have been constructed from these kinds of ligands, like 2,2′-(ethane-1,2-diyl)bis(1H-imidazole-4,5-dicarboxylic acid)-2-phenyl-1H-imidazole-4,5-dicarboxylic acid, 2-(hydroxymethyl)-1H-imidazole-4,5-dicarboxylic acid, 2,2′-(1,2-phenylene)bis(1H-imidazole-4,5-dicarboxylic acid), 2-(1H-tetrazol-1-methyl)-1H-imidazole-4,5-dicarboxylic acid and 2-(pyridin-4-yl)-1H-imidazole-4,5-dicarboxylic acid [9], [10], [11], [12], [13], [14], [15], [16]. Among the reported ligands, 2-((1H-tetrazol-1-yl)methyl)-1H-imidazole-4,5-dicarboxylic acid (H3tmidc) and corresponding deprotonated anions (H2tmidc, Htmidc2− and tmidc3−) are excellent ligands since there are five potential N-donors and four potential O-donors that can coordinate to metal ions with various coordination modes. So far, several CPs based on H3tmidc have been synthesized and characterized, such as Ba(II), Co(II), Cd(II), Zn(II), and Fe(II) CPs [1517], [18], [19]. In order to further enrich the categories and numbers of CPs based on this ligand, here we have used H3tmidc as a starting material to selfassemble with MnCl2·4H2O and successfully obtained a new CP [Mn(H2tmidc)2(H2O)2]·2H2O.

The asymmetric unit of the title structure consists of one half of Mn(II) ion, one H2tmidc anion, one coordinated water molecule, and one solvent water molecule. Each Mn1 is six-coordinated by N1, N1#1, O1 and O1#1 from two H2tmidc anions together with two H2O molecules (O5 and O5#1), exhibiting a slightly deformed MnN2O4 octahedral geometry. The bond angles of N1–Mn1–N1#1, O1–Mn1–O1#1 and O5–Mn1–O5#1 are 180°. The other bond angles around the Mn1 are more or less deviated from the normal values (76.48(5)°–103.52(5)°). The Mn–N bond length is 2.2116(16) Å, while the Mn–O bond lengths are 2.1959(15) and 2.2073(18) Å. All parameters are in the normal range of those observed in the reported Mn(II) CPs [11, 14]. The N1/N2/C2/C3/C5 imidazole ring and the Mn1/O1/C1/C2/N1 chelate ring are almost coplanar [dihedral angle = 1.36(10)°]. But the imidazole ring N1/N2/C2/C3/C5 and the tetrazole ring N3/N4/N5/N6/C7 are not coplanar [dihedral angle = 73.64(8)°]. The dihedral angles between the mean plane defined by the imidazole ring N1/N2/C2/C3/C5 and the planes of the carboxylate groups are 2.49(16)° and 2.6(3)°, respectively. There are N–H···O, O–H···O and O–H···N hydrogen bonds involving imidazole rings, tetrazole rings, coordinated water molecules, solvent water molecules, carboxyl and carboxylate groups. In addition, there are intermolecular ππ interactions between tetrazole rings with the centroid-centroid distance of 3.524(3) Å, which is in the range for common ππ interactions [15, 17]. [Mn(H2tmidc)2(H2O)2] units are linked by the aforementioned hydrogen bonds and ππ interactions to a three-dimensional architecture in the solid state.


Corresponding author: Ya-Ping Zhang, Pharmacy College, Henan University of Chinese Medicine, 450046, Zhengzhou, Henan, P. R. China, E-mail:

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: None declared.

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

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Received: 2022-06-15
Accepted: 2022-07-15
Published Online: 2022-08-29
Published in Print: 2022-12-16

© 2022 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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  54. La3.65Mg30Sb1.07 as a disordered derivative of Th2Ni17-type structure
  55. Crystal structure of (E)-N-(4-morpholinophenyl)-1-(quinoxalin-2-yl)methanimine, C19H18N4O
  56. The crystal structure of 2,2′-(1,2-phenylenebis(methylene))bis(1,3-dimethylisothiouronium) bromide, C14H24Br2N4S2
  57. Crystal structure of tetraaqua-bis[4-(1H-1,2,4-triazol-1-yl)benzoato-κ1 N]zinc(II), C18H20ZnN6O8
  58. Crystal structure of bis(tricarbonyl)-{(S)-(tert-butoxycarbonyl)(1-methoxy-1-oxo-3-sulfido-k2 S:S′-propan-2-yl)amido-k2N:N′}diiron(I) (Fe—Fe), C15H15Fe2NO10S
  59. Crystal structure of (E)-3-((4-chlorophenyl)thio)-4-hydroxypent-3-en-2-one, C11H11ClO2S
  60. The crystal structure of (E)-3′,6′-bis(diethylamino)-2-((5-(diethylamino)-2-hydroxybenzylidene)amino)spiro[isoindoline-1,9′-xanthen]-3-one, C39H45N5O3
  61. The crystal structure of 2-(4-methoxynaphthalen-1-yl)-4H-chromen-4-one, C20H14O3
  62. The crystal structure of trans-dichlorido-(ethylenediamine-κ 2 N,N′)-bis(triphenylphosphine-κ 1 P)ruthenium(II), C38H38Cl2N2P2Ru
  63. The double polymeric chain of catena-poly[(μ2-6-bromopyridine-3-carboxylato-κ2 O,O′) (6-bromopyridine-3-carboxylato-κ2 O,O′) (μ2-1,2-bis(4-pyridyl)ethylene-κ2 N:N′)cobalt(II)], C24H16CoBr2N4O4
  64. The crystal structure of tert-butyl 2-(4-(12-bromo [2.2]paracyclophanyl)carbamoyl)pyrrolidine-1-carboxylate, C26H31BrN2O3
  65. The crystal structure of (Z)-2-(2,3-dimethoxybenzylidene)naphtho[1,2-b]furan-3(2H)-one, C21H16O4
  66. Crystal structure of 2-hydroxy-1-tosylindolin-3-yl- 2-naphthoate, C26H21N1S1O5
  67. The crystal structure of 1-methyl-N-(1-methyl-1H-imidazole-2-carbonyl)-1H-imidazole-2-carboxamide, C10H11N5O2
  68. The crystal structure of (E)-2-((5-bromo-2-hydroxybenzylidene)amino)-3′,6′-bis(ethylamino)-2′, 7′-dimethylspiro[isoindoline-1,9′-xanthen]-3-one, C33H31BrN4O3
  69. The crystal structure of dimethanol-5,15-diphenylporphyrin-21,23-diido-κ4 N,Nʹ,Nʺ,Nʹʺ-manganese(III) trans-dicyanido-bis(acetylacetonato-κ2O,Oʹ)ruthenium(III), C46H42N6O6RuMn
  70. Crystal structure of 1,4,8,11-tetraazacyclotetradecane-1,8-diium bis(3,5-dicarboxybenzoate), C28H36N4O12
  71. Bifurcated halogen bonds in the crystal structure of 2,2′-bi(1,8-naphthyridine)—1,4-diiodotetrafluorobenzene (1/1), C22H10F4I2N4
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