Home Crystal structure of (E)-N-(4-morpholinophenyl)-1-(quinoxalin-2-yl)methanimine, C19H18N4O
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Crystal structure of (E)-N-(4-morpholinophenyl)-1-(quinoxalin-2-yl)methanimine, C19H18N4O

  • Pan Jing , Yue-Hong Yin EMAIL logo and Hai-Tao Zong ORCID logo
Published/Copyright: October 5, 2022

Abstract

C19H18N4O, monoclinic, P21/c (no. 14), a = 9.7995(9) Å, b = 10.0627(10) Å, c = 32.490(3) Å, β = 96.180(2)°, V = 3185.2(5) Å3, Z = 8, R gt (F) = 0.0502, wR ref (F 2) = 0.1597, T = 296 K.

CCDC no.: 2164551

Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Rod, red
Size: 0.20 × 0.08 × 0.06 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 0.09 mm−1
Diffractometer, scan mode: Bruker SMART, φ and ω-scans
θ max, completeness: 25°, >99%
N(hkl)measured, N(hkl)unique, R int: 15,810, 5603, 0.030
Criterion for I obs, N(hkl)gt: I obs > 2 σ(I obs), 3478
N(param)refined: 433
Programs: Bruker programs [1], SHELX [2]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

x y z U iso*/U eq
O1 0.55805 (19) 0.1428 (2) 0.34400 (5) 0.0876 (6)
O2 0.40323 (19) 0.16572 (19) 0.57136 (5) 0.0803 (5)
N1 −0.01266 (17) 0.16713 (18) 0.01612 (5) 0.0519 (4)
N2 −0.26081 (18) 0.0363 (2) 0.02704 (5) 0.0621 (5)
N3 0.06024 (18) 0.06130 (18) 0.11954 (5) 0.0572 (5)
N4 0.43326 (18) 0.0754 (2) 0.26381 (5) 0.0603 (5)
N5 −0.10473 (18) 0.15735 (19) 0.23576 (5) 0.0577 (5)
N6 −0.2164 (2) −0.0997 (2) 0.22278 (6) 0.0747 (6)
N7 0.00561 (18) 0.01724 (19) 0.33272 (5) 0.0606 (5)
N8 0.30538 (17) 0.09231 (17) 0.48890 (5) 0.0516 (5)
C1 −0.1186 (2) 0.1617 (2) −0.01509 (6) 0.0477 (5)
C2 −0.1038 (2) 0.2233 (2) −0.05319 (6) 0.0580 (6)
H2B −0.021952 0.265850 −0.057162 0.070*
C3 −0.2083 (3) 0.2211 (2) −0.08421 (7) 0.0647 (6)
H3B −0.197987 0.262200 −0.109318 0.078*
C4 −0.3315 (3) 0.1569 (3) −0.07845 (7) 0.0685 (7)
H4A −0.402528 0.155997 −0.099868 0.082*
C5 −0.3489 (2) 0.0962 (2) −0.04215 (7) 0.0623 (6)
H5B −0.431250 0.053566 −0.038863 0.075*
C6 −0.2428 (2) 0.0976 (2) −0.00954 (6) 0.0507 (5)
C7 −0.1569 (2) 0.0412 (2) 0.05583 (6) 0.0578 (6)
H7B −0.165234 −0.001131 0.080876 0.069*
C8 −0.0326 (2) 0.1076 (2) 0.05087 (6) 0.0487 (5)
C9 0.0773 (2) 0.1138 (2) 0.08499 (6) 0.0540 (6)
H9A 0.159542 0.156065 0.081369 0.065*
C10 0.1596 (2) 0.0686 (2) 0.15389 (6) 0.0530 (5)
C11 0.1426 (2) −0.0128 (2) 0.18675 (6) 0.0600 (6)
H11A 0.068253 −0.070700 0.184705 0.072*
C12 0.2307 (2) −0.0124 (2) 0.22253 (7) 0.0623 (6)
H12A 0.215557 −0.070427 0.243845 0.075*
C13 0.3425 (2) 0.0736 (2) 0.22740 (6) 0.0526 (6)
C14 0.3602 (3) 0.1557 (3) 0.19380 (7) 0.0767 (8)
H14A 0.434069 0.214166 0.195751 0.092*
C15 0.2728 (3) 0.1532 (3) 0.15821 (7) 0.0759 (8)
H15A 0.289026 0.208934 0.136434 0.091*
C16 0.5219 (3) 0.1893 (3) 0.27102 (7) 0.0933 (10)
H16A 0.466441 0.268025 0.273665 0.112*
H16B 0.573374 0.201751 0.247429 0.112*
C17 0.6201 (3) 0.1729 (5) 0.30948 (8) 0.1347 (17)
H17A 0.684802 0.102960 0.304868 0.162*
H17B 0.671712 0.254671 0.314453 0.162*
C18 0.3799 (3) 0.0340 (4) 0.30091 (7) 0.1097 (12)
H18A 0.336908 −0.052348 0.296259 0.132*
H18B 0.309453 0.096204 0.307194 0.132*
C19 0.4862 (3) 0.0249 (3) 0.33744 (8) 0.1015 (10)
H19A 0.441972 0.003336 0.361913 0.122*
H19B 0.549774 −0.046177 0.332982 0.122*
C20 −0.1880 (2) 0.1267 (2) 0.20050 (6) 0.0530 (6)
C21 −0.2168 (2) 0.2240 (3) 0.16995 (6) 0.0656 (6)
H21A −0.173838 0.306375 0.172757 0.079*
C22 −0.3074 (3) 0.1982 (3) 0.13623 (7) 0.0730 (7)
H22A −0.328085 0.263772 0.116354 0.088*
C23 −0.3697 (3) 0.0734 (3) 0.13137 (7) 0.0758 (8)
H23A −0.432884 0.057422 0.108441 0.091*
C24 −0.3399 (2) −0.0245 (3) 0.15933 (7) 0.0715 (7)
H24A −0.380293 −0.107774 0.155197 0.086*
C25 −0.2476 (2) −0.0002 (2) 0.19463 (6) 0.0592 (6)
C26 −0.1368 (3) −0.0681 (3) 0.25601 (7) 0.0705 (7)
H26A −0.114097 −0.133559 0.275769 0.085*
C27 −0.0832 (2) 0.0616 (2) 0.26345 (6) 0.0548 (6)
C28 −0.0017 (2) 0.0957 (2) 0.30225 (6) 0.0596 (6)
H28A 0.045316 0.176123 0.304569 0.072*
C29 0.0825 (2) 0.0461 (2) 0.37102 (6) 0.0513 (5)
C30 0.0723 (2) −0.0441 (2) 0.40243 (6) 0.0630 (6)
H30A 0.015398 −0.117547 0.397397 0.076*
C31 0.1432 (2) −0.0290 (2) 0.44088 (6) 0.0605 (6)
H31A 0.132830 −0.091945 0.461270 0.073*
C32 0.2305 (2) 0.0786 (2) 0.45002 (6) 0.0460 (5)
C33 0.2402 (2) 0.1697 (2) 0.41811 (6) 0.0599 (6)
H33A 0.297232 0.243239 0.422931 0.072*
C34 0.1684 (2) 0.1542 (2) 0.37996 (6) 0.0623 (6)
H34A 0.177347 0.217485 0.359561 0.075*
C35 0.3748 (3) 0.2168 (3) 0.49852 (7) 0.0729 (7)
H35A 0.307387 0.285719 0.501534 0.088*
H35B 0.426391 0.241711 0.475836 0.088*
C36 0.4703 (3) 0.2073 (3) 0.53752 (7) 0.0824 (8)
H36A 0.543061 0.144912 0.533426 0.099*
H36B 0.511951 0.293441 0.543649 0.099*
C37 0.2457 (3) 0.0389 (3) 0.52440 (7) 0.0857 (9)
H37A 0.214751 −0.051273 0.518438 0.103*
H37B 0.166477 0.091816 0.529513 0.103*
C38 0.3473 (3) 0.0392 (3) 0.56231 (7) 0.0936 (10)
H38A 0.302476 0.008185 0.585719 0.112*
H38B 0.420960 −0.022282 0.558304 0.112*

Source of material

Quinoxaline-2-carbaldehyde (0.158 g, 1 mmol) and 4-morpholin-4-yl-phenylamine (0.178 g, 1 mmol) was dissolved in an ethanol solution (10 ml). The mixture was stirred for 1 h under refluxing. The resulting solution was left in air for a few days, yielding red rod-shaped crystals.

Experimental details

The structure was solved by direct methods and refined with the SHELX crystallographic software package [2]. The hydrogen atoms were placed at calculated positions and refined as riding atoms with isotropic displacement parameters.

Discussion

Quinoxaline derivatives are widely distributed in nature and have various biological applications [3]. Particularly, quinoxaline-based Schiff base complexes have attracted more and more attention because of their interesting chemical and biological properties [4]. Moreover, some quinoline-containing Schiff bases have been developed as probes for the fluorescent detection of metal ions [5]. As part of our ongoing studies on fluorescent probes, the title compound was synthesized and characterized by X-ray diffraction.

In the title structure, there are two independent molecules in the asymmetric unit (one of them is shown in the Figure). The bond lengths of C9–N3 and C28–N7 are found to be 1.268(3) and 1.262(3) Å, respectively, clearly indicating the Schiff base formation. The quinoxaline ring (C1–C8/N1, N2 and C20–C27/N5, N6, r.m.s. deviations of 0.0054 and 0.0333 Å, respectively) and the aryl ring (C10–C15 and C29–C34, r.m.s. deviations of 0.0047 and 0.0021 Å, respectively) in each molecule are almost coplanar, with the dihedral angles of 14.7 and 16.5°, respectively. Bond lengths and angles are all in the expected ranges for molecules containing a (quinoxalin-2-yl)methanimine moiety [6].


Corresponding author: Yue-Hong Yin, School of Physics and Electronic Information Engineering, Henan Polytechnic University, Jiaozuo, 454000, P. R. China, E-mail:

Funding source: Fundamental Research Funds for the Universities of Henan Province

Award Identifier / Grant number: NSFRF210343

Award Identifier / Grant number: NSFRF210328

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: This study was financially supported by the Fundamental Research Funds for the Universities of Henan Province (NSFRF210343 and NSFRF210328).

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

References

1. Bruker. SMART and SAINT; Bruker AXS Inc.: Madison, Wisconsin, USA, 2007.Search in Google Scholar

2. Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. 2008, A64, 112–122; https://doi.org/10.1107/s0108767307043930.Search in Google Scholar PubMed

3. Biesen, L., Müller, T. J. J. Multicomponent and one–pot syntheses of quinoxalines. Adv. Synth. Catal. 2021, 363, 980–1006; https://doi.org/10.1002/adsc.202001219.Search in Google Scholar

4. Dhanaraj, C. J., Johnson, J. Synthesis, characterization, electrochemical and biological studies on some metal(II) Schiff base complexes containing quinoxaline moiety. Spectrochim. Acta Mol. Biomol. Spectrosc. 2014, 118, 624–631; https://doi.org/10.1016/j.saa.2013.09.007.Search in Google Scholar PubMed

5. Feng, L., Shi, W., Ma, J., Chen, Y., Kui, F., Hui, Y., Xie, Z. A novel thiosemicarbazone Schiff base derivative with aggregation-induced emission enhancement characteristics and its application in Hg2+ detection. Sens. Actuators, B 2016, 237, 563–569; https://doi.org/10.1016/j.snb.2016.06.129.Search in Google Scholar

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Received: 2022-03-11
Accepted: 2022-04-05
Published Online: 2022-10-05
Published in Print: 2022-12-16

© 2022 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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  67. The crystal structure of 1-methyl-N-(1-methyl-1H-imidazole-2-carbonyl)-1H-imidazole-2-carboxamide, C10H11N5O2
  68. The crystal structure of (E)-2-((5-bromo-2-hydroxybenzylidene)amino)-3′,6′-bis(ethylamino)-2′, 7′-dimethylspiro[isoindoline-1,9′-xanthen]-3-one, C33H31BrN4O3
  69. The crystal structure of dimethanol-5,15-diphenylporphyrin-21,23-diido-κ4 N,Nʹ,Nʺ,Nʹʺ-manganese(III) trans-dicyanido-bis(acetylacetonato-κ2O,Oʹ)ruthenium(III), C46H42N6O6RuMn
  70. Crystal structure of 1,4,8,11-tetraazacyclotetradecane-1,8-diium bis(3,5-dicarboxybenzoate), C28H36N4O12
  71. Bifurcated halogen bonds in the crystal structure of 2,2′-bi(1,8-naphthyridine)—1,4-diiodotetrafluorobenzene (1/1), C22H10F4I2N4
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