Nuclear redox processes in land plant development and stress adaptation

References

Althoff, F., Wegner, L., Ehlers, K., Buschmann, H., and Zachgo, S. (2022). Developmental plasticity of the amphibious liverwort Riccia fluitans. Front. Plant Sci., https://doi.org/10.3389/fpls.2022.909327.Search in Google Scholar PubMed PubMed Central

Althoff, F. and Zachgo, S. (2020). Transformation of Riccia fluitans, an amphibious liverwort dynamically responding to environmental changes. Int. J. Mol. Sci. 21: 5410, https://doi.org/10.3390/ijms21155410.Search in Google Scholar PubMed PubMed Central

Balaguer, M., Fisher, A.P., Clark, N.M., Guadalupe Fernandez-Espinosa, M., Möller, B.K., Weijers, D., Lohmann, J.U., Williams, C., Lorenzo, O., and Sozzani, R. (2017). Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. USA 114: 7632–7640.10.1073/pnas.1707566114Search in Google Scholar PubMed PubMed Central

Bowman, J., Arteaga-Vazquez, M., Berger, F., Briginshaw, L.N., Carella, P., Aguilar-Cruz, A., Davies, K.M., Dierschke, T., Dolan, L., Dorantes-Acosta, A.E., et al.. (2022). The renaissance and enlightenment of Marchantia as a model system. Plant Cell 34: 3512–3542. https://doi.org/10.1093/plcell/koac219.Search in Google Scholar PubMed PubMed Central

Busch, A., Deckena, M., Almeida-Trapp, M., Kopischke, S., Kock, C., Schuessler, E., Tsiantis, M., Mithofer, A., and Zachgo, S. (2019). MpTCP1 controls cell proliferation and redox processes in Marchantia polymorpha. New Phytol. 224: 1627–1641, https://doi.org/10.1111/nph.16132.Search in Google Scholar PubMed

Dietz, K.-J. (2014). Redox regulation of transcription factors in plant stress acclimation and development. Antioxidants Redox Signal. 9: 1357–1372.10.1089/ars.2013.5672Search in Google Scholar PubMed

Doebley, J., Stec, A., and Hubbard, L. (1997). The evolution of apical dominance in maize. Nature 386: 485–488.10.1038/386485a0Search in Google Scholar PubMed

Gutsche, N., Holtmannspötter, M., Maß, L., O’Donoghue, M., Busch, A., Lauri, A., Schubert, V., and Zachgo, S. (2017). Conserved redox-dependent DNA binding of ROXY glutaredoxins with TGA transcription factors. Plant Direct 1: 1–16, https://doi.org/10.1002/pld3.30.Search in Google Scholar PubMed PubMed Central

Gutsche, N., Thurow, C., Zachgo, S., and Gatz, C. (2015). Plant-specific CC-type glutaredoxins: functions in developmental processes and stress response. Biol. Chem. 396: 495–509, https://doi.org/10.1002/pld3.30.Search in Google Scholar

Gutsche, N. and Zachgo, S. (2016). The N-terminus of the floral Arabidopsis TGA transcription factor PERIANTHIA mediates redox-sensitive DNA-binding. PLoS One 29: e0153810, https://doi.org/10.1371/journal.pone.0153810.Search in Google Scholar PubMed PubMed Central

Hong, L., Tang, D., Zhu, K., Wang, K., Li, M., and Cheng, Z. (2012). Somatic and reproductive cell development in rice anther is regulated by a putative glutaredoxin. Plant Cell 24: 577–588, https://doi.org/10.1105/tpc.111.093740.Search in Google Scholar PubMed PubMed Central

Karaaslan, E.S.H., Wang, N., Fais, N., Liang, Y., Montgomery, S.A., Laubinger, S., Berendzen, K.W., Berger, F., Breuninger, H., and Liu, C. (2020). Marchantia TCP transcription factor activity correlates with three-dimensional chromatin structure. Native Plants 6: 1250–1261, https://doi.org/10.1038/s41477-020-00766-0.Search in Google Scholar PubMed

Kelliher, T. and Walbot, V. (2012). Hypoxia triggers meiotic fate acquisition in maize. Science 337: 345–348, https://doi.org/10.1126/science.1220080.Search in Google Scholar PubMed PubMed Central

Kindgren, P., Ivanov, M., and Marquardt, S. (2020). Native elongation transcript sequencing reveals temperature dependent dynamics of nascent RNAPII transcription in Arabidopsis. Nucl. Acids Res. 48: 2332–2347, https://doi.org/10.1105/tpc.108.064477.Search in Google Scholar PubMed PubMed Central

Li, S., Lauri, A., Ziemann, M., Busch, A., Bhave, M., and Zachgo, S. (2009). Nuclear activity of ROXY1, a glutaredoxin interacting with TGA factors, is required for petal development in Arabidopsis thaliana. Plant Cell 21: 429–441, https://doi.org/10.1105/tpc.108.064477.Search in Google Scholar

Maß, L., Holtmannspötter, M., and Zachgo, S. (2020). Dual-color 3D-dSTORM colocalization and quantification of ROXY1 and RNAPII variants throughout the transcription cycle in root meristem nuclei. Plant J. 104: 1423–1436, https://doi.org/10.1111/tpj.14986.Search in Google Scholar PubMed

Mittler, R., Zandalinas, S.I., Fichman, Y., and Van Breusegem, F. (2022). Reactive oxygen species signalling in plant stress responses. Nat. Rev. 23: 663–679.10.1038/s41580-022-00499-2Search in Google Scholar PubMed

Munoz, P., Huenchuguala, S., Paris, I., and Segura-Aguilar, J. (2012). Dopamine oxidation and autophagy. Parkinson’s Dis. 2012: 920953, https://doi.org/10.1155/2012/920953.Search in Google Scholar PubMed PubMed Central

Murmu, J., Bush, M.J., DeLong, C., Li, S., Xu, M., Khan, M., Malcolmson, C., Fobert, P.R., Zachgo, S., and Hepworth, S.R. (2010). Arabidopsis basic leucine-zipper transcription factors TGA9 and TGA10 interact with floral glutaredoxins ROXY1 and ROXY2 and are redundantly required for anther development. Plant Physiol. 154: 1492–1504, https://doi.org/10.1104/pp.110.159111.Search in Google Scholar PubMed PubMed Central

Nawrath, C., Schell, J., and Koncz, C. (1990). Homologous domains of the largest subunit of eucaryotic RNA polymerase II are conserved in plants. Mol. Gen. Genet. 223: 65–75, https://doi.org/10.1007/bf00315798.Search in Google Scholar PubMed

Pautler, M., Eveland, A.L., LaRue, T., Yang, F., Weeks, R., Lunde, C., Je, B.I., Meeley, R., Komatsu, M., Vollbrecht, E., et al.. (2015). FASCIATED EAR4 encodes a bZIP transcription factor that regulates shoot meristem size in maize. Plant Cell 27: 104–120, https://doi.org/10.1105/tpc.114.132506.Search in Google Scholar PubMed PubMed Central

Sasidharan, R., Schippers, J.H.M., and Schmidt, R.R. (2021). Redox and low-oxygen stress: signal integration and interplay. Plant Physiol. 186: 66–78, https://doi.org/10.1093/plphys/kiaa081.Search in Google Scholar PubMed PubMed Central

Tian, Y.C., Fan, M., Qin, Z.X., Lv, H.J., Wang, M.M., Zhang, Z., Zhou, W.Y., Zhao, N., Li, X.H., Han, C., et al.. (2018). Hydrogen peroxide positively regulates brassinosteroid signaling through oxidation of the BRASSINAZOLE-RESISTANT1 transcription factor. Nat. Commun. 9: e1063, https://doi.org/10.1038/s41467-018-03463-x.Search in Google Scholar PubMed PubMed Central

Tsukagoshi, H., Busch, W., and Benfey, P.N. (2010). Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root. Cell 143: 606–616, https://doi.org/10.1016/j.cell.2010.10.020.Search in Google Scholar PubMed

Viola, I.L., Camoirano, A., and Gonzalez, D.H. (2016). Redox-dependent modulation of anthocyanin biosynthesis by the TCP transcription factor TCP15 during exposure to high light intensity conditions in Arabidopsis. Plant Physiol. 170: 74–85, https://doi.org/10.1104/pp.15.01016.Search in Google Scholar PubMed PubMed Central

de Vries, J. and Archibald, J.M. (2018). Plant evolution: landmarks on the path to terrestrial life. New Phytol. 217: 1428–1434, https://doi.org/10.1111/nph.14975.Search in Google Scholar PubMed

Weits, D.A., Kunkowska, A.B., Kamps, N.C.W., Portz, K.M.S., Packbier, N.K., Venza, Z.N., Gaillochet, C., Lohmann, J.U., Pedersen, O., van Dongen, J.T., et al.. (2019). An apical hypoxic niche sets the pace of shoot meristem activity. Nature 269: 714–717, https://doi.org/10.1038/s41586-019-1203-6.Search in Google Scholar PubMed

Xing, S., Rosso, M.G., and Zachgo, S. (2005). ROXY1, a member of the plant glutaredoxin family, is required for petal development in Arabidopsis thaliana. Development 132: 1555–1565, https://doi.org/10.1242/dev.01725.Search in Google Scholar PubMed

Xing, S. and Zachgo, S. (2008). ROXY1 and ROXY2, two CC type glutaredoxin genes, together control anther development in Arabidopsis thaliana. Plant J. 53: 790–801, https://doi.org/10.1111/j.1365-313x.2007.03375.x.Search in Google Scholar PubMed

Yang, F., Bui, H.T., Pautler, M., Llaca, V., Johnston, R., Lee, B.H., Kolbe, A., Sakai, H., and Jackson, D. (2015). A maize glutaredoxin gene, Abphyl2, regulates shoot meristem size and phyllotaxy. Plant Cell 27: 121–131, https://doi.org/10.1105/tpc.114.130393.Search in Google Scholar PubMed PubMed Central

Yang, R.S., Xu, F., Wang, Y.M., Zhong, W.S., Dong, L., Shi, Y.N., Tang, T.J., Sheng, H.J., Jackson, D., and Yang, F. (2021). Glutaredoxins regulate maize inflorescence meristem development via redox control of TGA transcriptional activity. Nat. Plants 12: 1589–1601.10.1038/s41477-021-01029-2Search in Google Scholar PubMed

Zeng, J., Dong, Z., Wu, H., Tian, Z., and Zhao, Z. (2017). Redox regulation of plant stem cell fate. EMBO J. 36: e201695955, https://doi.org/10.15252/embj.201695955.Search in Google Scholar PubMed PubMed Central

Zhu, J., Liu, M., Liu, X., and Dong, Z. (2018). RNA polymerase II activity revealed bei GRO-seq and pNET-seq in Arabidopsis. Native Plants 4: 1112–1123, https://doi.org/10.1038/s41477-018-0280-0.Search in Google Scholar PubMed