Structural, spectral and docking studies of a coordination polymer of zinc(II) formed by a pyridine-derived linker
-
Farzin Marandi
, Keyvan Moeini
, Fereshteh Alizadeh
Abstract
A mixed ligand zinc coordination polymer, {Zn(μ-DPE)(DBM)2}n (1) (HDBM: dibenzoylmethane and DPE: (E)-1,2-di(pyridin-4-yl)ethene), was prepared and identified by elemental analysis, FT-IR, 1H NMR spectroscopy and single-crystal X-ray diffraction. In the 1D linear coordination polymer of 1, the zinc atom has a ZnN2O4 environment with octahedral geometry. These complex units are linked by the bridging of the planar N2 donor DPE ligands. In the coordination network of complex 1, in addition to the hydrogen bonds, the network is more stabilized by π–π stacking interactions between pyridine and β-diketone moieties of the ligands. These interactions increase the ability of the compound to interact with biomacromolecules (BRAF kinase, CatB, DNA gyrase, HDAC7, rHA, RNR, TrxR, TS and Top II) as investigated by docking calculations.
References
[1] H.-Y. Wang, L. Cui, J.-Z. Xie, C. F. Leong, D. M. D’Alessandro, J.-L. Zuo, Coord. Chem. Rev.2017, 345, 342.10.1016/j.ccr.2016.10.011Suche in Google Scholar
[2] H. Yao, F. Zhang, G. Zhang, H. Luo, L. Liu, M. Shen, Y. Yang, Chem. Eng. J.2018, 334, 2547.10.1016/j.cej.2017.12.013Suche in Google Scholar
[3] M. Chen, R. Sun, Y. Ye, H. Tang, X. Dong, J. Yan, K. Wang, Q. Zhou, Z. Wang, Opt. Mater.2018, 76, 141.10.1016/j.optmat.2017.12.005Suche in Google Scholar
[4] M. Y. Masoomi, A. Morsali, P. C. Junk, J. Wang, Ultrason. Sonochem.2017, 34, 984.10.1016/j.ultsonch.2016.06.024Suche in Google Scholar PubMed
[5] Y.-R. Huang, L.-L. Gao, X.-Q. Wang, L.-M. Fan, T.-P. Hu, J. Solid State Chem.2018, 258, 854.10.1016/j.jssc.2017.12.028Suche in Google Scholar
[6] S. Sugimoto, H. Ohtsu, K. Tsuge, J. Photochem. Photobiol. A2018, 353, 602.10.1016/j.jphotochem.2017.08.002Suche in Google Scholar
[7] C. Wang, T. Zhang, W. Lin, Chem. Rev.2012, 112, 1084.10.1021/cr200252nSuche in Google Scholar PubMed
[8] M. Kurmoo, Chem. Soc. Rev.2009, 38, 1353.10.1039/b804757jSuche in Google Scholar PubMed
[9] C.-J. Xu, B.-G. Li, J.-T. Wan, Z.-Y. Bu, J. Lumin.2011, 131, 1566.10.1016/j.jlumin.2011.03.047Suche in Google Scholar
[10] K. Buczko, M. Karbowiak, J. Lumin.2013, 136, 130.10.1016/j.jlumin.2012.11.026Suche in Google Scholar
[11] X. Zhang, M. Cui, R. Zhou, C. Chen, G. Zhang, Macromol. Rapid Commun.2014, 35, 566.10.1002/marc.201300834Suche in Google Scholar
[12] S. Schwieger, R. Herzog, C. Wagner, D. Steinborn, J. Organomet. Chem.2009, 694, 3548.10.1016/j.jorganchem.2009.07.020Suche in Google Scholar
[13] J. C.-H. Chan, W. H. Lam, H.-L. Wong, N. Zhu, W.-T. Wong, V. W.-W. Yam, J. Am. Chem. Soc.2011, 133, 12690.10.1021/ja203946gSuche in Google Scholar
[14] M. J. McKeage, L. Maharaj, S. J. Berners-Price, Coord. Chem. Rev.2002, 232, 127.10.1016/S0010-8545(02)00048-6Suche in Google Scholar
[15] M. P. Rigobello, L. Messori, G. Marcon, M. A. Cinellu, M. Bragadin, A. Folda, G. Scutari, A. Bindoli, J. Inorg. Biochem.2004, 98, 1634.10.1016/j.jinorgbio.2004.04.020Suche in Google Scholar PubMed
[16] G. D. Diana, P. M. Carabateas, R. E. Johnson, G. L. Williams, F. Pancic, J. C. Collins, J. Med. Chem.1978, 21, 889.10.1021/jm00207a010Suche in Google Scholar PubMed
[17] R. K. Maheshwari, A. K. Singh, J. Gaddipati, R. C. Srimal, Life Sci.2006, 78, 2081.10.1016/j.lfs.2005.12.007Suche in Google Scholar PubMed
[18] H. Foks, D. Pancechowska-Ksepko, A. Kędzia, Z. Zwolska, M. Janowiec, E. Augustynowicz-Kopeć, Il Farmaco2005, 60, 513.10.1016/j.farmac.2005.05.002Suche in Google Scholar PubMed
[19] M. M. Ghorab, A. Y. Hassan, Phosphorus Sulfur Silicon Relat. Elem.1998, 141, 251.10.1080/10426509808033737Suche in Google Scholar
[20] M. Dardenne, J. M. Pléau, B. Nabarra, P. Lefrancier, M. Derrien, J. Choay, J. F. Bach, Proc. Natl. Acad. Sci. USA1982, 79, 5370.10.1073/pnas.79.17.5370Suche in Google Scholar PubMed PubMed Central
[21] O. Bermingham-Mcdonogh, E. B. Gralla, J. S. Valentine, Proc. Natl. Acad. Sci. USA1988, 85, 4789.10.1073/pnas.85.13.4789Suche in Google Scholar PubMed PubMed Central
[22] A. H. Shankar, A. S. Prasad, Am. J. Clin. Nutr.1998, 68, 447S.10.1093/ajcn/68.2.447SSuche in Google Scholar PubMed
[23] A. A. Adeniyi, P. A. Ajibade, Molecules2013, 18, 3760.10.3390/molecules18043760Suche in Google Scholar PubMed PubMed Central
[24] K. Nakamoto, Infrared and Raman Spectra of Inorganic and Coordination Compounds, John Wiley, Hoboken, 2009, pp. 259–260.10.1002/9780470405888Suche in Google Scholar
[25] F. Marandi, J. Mol. Struct.2014, 1059, 75.10.1016/j.molstruc.2013.11.035Suche in Google Scholar
[26] M. Hakimi, Z. Mardani, K. Moeini, E. Schuh, F. Mohr, Z. Naturforsch.2013, 68b, 267.10.5560/znb.2013-2294Suche in Google Scholar
[27] Z. Mardani, V. Golsanamlou, S. Khodavandegar, K. Moeini, A. M. Z. Slawin, J. D. Woollins, J. Coord. Chem.2018, 71, 120.10.1080/00958972.2018.1426852Suche in Google Scholar
[28] M. Sánchez-Serratos, J. R. Álvarez, E. González-Zamora, I. A. Ibarra, J. Mex. Chem. Soc.2016, 60, 43.10.29356/jmcs.v60i2.72Suche in Google Scholar
[29] D. Williams, Acta Crystallogr.1966, 21, 340.10.1107/S0365110X66002901Suche in Google Scholar
[30] F. Marandi, K. Moeini, B. Mostafazadeh, H. Krautscheid, Polyhedron2017, 133, 146.10.1016/j.poly.2017.05.029Suche in Google Scholar
[31] F. Marandi, K. Moeini, S. Ghasemzadeh, Z. Mardani, C. K. Quah, W.-S. Loh, J. Mol. Struct.2017, 1149, 92.10.1016/j.molstruc.2017.06.039Suche in Google Scholar
[32] G. Jones, P. Willett, R. C. Glen, A. R. Leach, R. Taylor, J. Mol. Biol.1997, 267, 727.10.1006/jmbi.1996.0897Suche in Google Scholar PubMed
[33] F. Marandi, F. Amoopour, I. Pantenburg, G. Meyer, J. Mol. Struct.2010, 973, 124.10.1016/j.molstruc.2010.03.056Suche in Google Scholar
[34] Apex-II (version 1-0), Bruker AXS Inc., Madison, WI (USA), 2009.Suche in Google Scholar
[35] G. Sheldrick, Acta Crystallogr.2008, A64, 112.10.1107/S0108767307043930Suche in Google Scholar PubMed
[36] L. J. Farrugia, J. Appl. Crystallogr.1997, 30, 565.10.1107/S0021889897003117Suche in Google Scholar
[37] M. N. Burnett, C. K. Johnson, Ortep-III, Report ORNL-6895. Oak Ridge National Laboratory, Oak Ridge, TN (USA) 1996.Suche in Google Scholar
[38] G. Bergerhof, M. Berndt, K. Brandenburg, J. Res. Natl. Stand. Technol.1996, 101, 221.10.6028/jres.101.023Suche in Google Scholar PubMed PubMed Central
[39] A. Gavezzotti, Acc. Chem. Res.1994, 27, 309.10.1021/ar00046a004Suche in Google Scholar
[40] J. Vansant, G. Smets, J. P. Declercq, G. Germain, M. Van Meerssche, J. Org. Chem.1980, 45, 1557.10.1021/jo01297a002Suche in Google Scholar
[41] D. E. Williams, Acta Crystallogr.1966, 21, 340.10.1107/S0365110X66002901Suche in Google Scholar
©2018 Walter de Gruyter GmbH, Berlin/Boston
Artikel in diesem Heft
- Frontmatter
- In this Issue
- Influence of different metal ions on the assembly, structures, and properties of two complexes based on the semi-rigid bis(pyridyl)-bis(amide) ligand and 4,4′-oxybis(benzoic acid)
- Structural, spectral and docking studies of a coordination polymer of zinc(II) formed by a pyridine-derived linker
- The isolation and structural elucidation of a new iridoid glycoside from Cymbaria dahurica L.
- Two new alkylresorcinol derivatives from the leaves of Scyphocephalium ochocoa
- Synthesis and antimicrobial evaluation of some heterocyclic compounds from 3-aryl-1-phenyl-1H-pyrazole-4-carbaldehydes
- Studying the reactivity of N-2-(2-aminobenzoyl)-N-phenyl-hydrazinecarbothioamide toward some selected carbonyl compounds
- A Zn(II) complex from an imidazolyl-thiophene ligand: synthesis, structural characterization, and fluorescence
- A study on the reaction of 3-alkyl(aryl)imidazo[1,5-a]pyridines with ninhydrin
- Synthesis, structural characterization, and properties of Ag(I) complexes with N-donor ligands
Artikel in diesem Heft
- Frontmatter
- In this Issue
- Influence of different metal ions on the assembly, structures, and properties of two complexes based on the semi-rigid bis(pyridyl)-bis(amide) ligand and 4,4′-oxybis(benzoic acid)
- Structural, spectral and docking studies of a coordination polymer of zinc(II) formed by a pyridine-derived linker
- The isolation and structural elucidation of a new iridoid glycoside from Cymbaria dahurica L.
- Two new alkylresorcinol derivatives from the leaves of Scyphocephalium ochocoa
- Synthesis and antimicrobial evaluation of some heterocyclic compounds from 3-aryl-1-phenyl-1H-pyrazole-4-carbaldehydes
- Studying the reactivity of N-2-(2-aminobenzoyl)-N-phenyl-hydrazinecarbothioamide toward some selected carbonyl compounds
- A Zn(II) complex from an imidazolyl-thiophene ligand: synthesis, structural characterization, and fluorescence
- A study on the reaction of 3-alkyl(aryl)imidazo[1,5-a]pyridines with ninhydrin
- Synthesis, structural characterization, and properties of Ag(I) complexes with N-donor ligands