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Structural, spectral and docking studies of a coordination polymer of zinc(II) formed by a pyridine-derived linker

  • Farzin Marandi EMAIL logo , Keyvan Moeini EMAIL logo , Fereshteh Alizadeh , Zahra Mardani , Ching Kheng Quah and Wan-Sin Loh
Published/Copyright: May 3, 2018
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Abstract

A mixed ligand zinc coordination polymer, {Zn(μ-DPE)(DBM)2}n (1) (HDBM: dibenzoylmethane and DPE: (E)-1,2-di(pyridin-4-yl)ethene), was prepared and identified by elemental analysis, FT-IR, 1H NMR spectroscopy and single-crystal X-ray diffraction. In the 1D linear coordination polymer of 1, the zinc atom has a ZnN2O4 environment with octahedral geometry. These complex units are linked by the bridging of the planar N2 donor DPE ligands. In the coordination network of complex 1, in addition to the hydrogen bonds, the network is more stabilized by π–π stacking interactions between pyridine and β-diketone moieties of the ligands. These interactions increase the ability of the compound to interact with biomacromolecules (BRAF kinase, CatB, DNA gyrase, HDAC7, rHA, RNR, TrxR, TS and Top II) as investigated by docking calculations.

References

[1] H.-Y. Wang, L. Cui, J.-Z. Xie, C. F. Leong, D. M. D’Alessandro, J.-L. Zuo, Coord. Chem. Rev.2017, 345, 342.10.1016/j.ccr.2016.10.011Search in Google Scholar

[2] H. Yao, F. Zhang, G. Zhang, H. Luo, L. Liu, M. Shen, Y. Yang, Chem. Eng. J.2018, 334, 2547.10.1016/j.cej.2017.12.013Search in Google Scholar

[3] M. Chen, R. Sun, Y. Ye, H. Tang, X. Dong, J. Yan, K. Wang, Q. Zhou, Z. Wang, Opt. Mater.2018, 76, 141.10.1016/j.optmat.2017.12.005Search in Google Scholar

[4] M. Y. Masoomi, A. Morsali, P. C. Junk, J. Wang, Ultrason. Sonochem.2017, 34, 984.10.1016/j.ultsonch.2016.06.024Search in Google Scholar PubMed

[5] Y.-R. Huang, L.-L. Gao, X.-Q. Wang, L.-M. Fan, T.-P. Hu, J. Solid State Chem.2018, 258, 854.10.1016/j.jssc.2017.12.028Search in Google Scholar

[6] S. Sugimoto, H. Ohtsu, K. Tsuge, J. Photochem. Photobiol. A2018, 353, 602.10.1016/j.jphotochem.2017.08.002Search in Google Scholar

[7] C. Wang, T. Zhang, W. Lin, Chem. Rev.2012, 112, 1084.10.1021/cr200252nSearch in Google Scholar PubMed

[8] M. Kurmoo, Chem. Soc. Rev.2009, 38, 1353.10.1039/b804757jSearch in Google Scholar PubMed

[9] C.-J. Xu, B.-G. Li, J.-T. Wan, Z.-Y. Bu, J. Lumin.2011, 131, 1566.10.1016/j.jlumin.2011.03.047Search in Google Scholar

[10] K. Buczko, M. Karbowiak, J. Lumin.2013, 136, 130.10.1016/j.jlumin.2012.11.026Search in Google Scholar

[11] X. Zhang, M. Cui, R. Zhou, C. Chen, G. Zhang, Macromol. Rapid Commun.2014, 35, 566.10.1002/marc.201300834Search in Google Scholar

[12] S. Schwieger, R. Herzog, C. Wagner, D. Steinborn, J. Organomet. Chem.2009, 694, 3548.10.1016/j.jorganchem.2009.07.020Search in Google Scholar

[13] J. C.-H. Chan, W. H. Lam, H.-L. Wong, N. Zhu, W.-T. Wong, V. W.-W. Yam, J. Am. Chem. Soc.2011, 133, 12690.10.1021/ja203946gSearch in Google Scholar

[14] M. J. McKeage, L. Maharaj, S. J. Berners-Price, Coord. Chem. Rev.2002, 232, 127.10.1016/S0010-8545(02)00048-6Search in Google Scholar

[15] M. P. Rigobello, L. Messori, G. Marcon, M. A. Cinellu, M. Bragadin, A. Folda, G. Scutari, A. Bindoli, J. Inorg. Biochem.2004, 98, 1634.10.1016/j.jinorgbio.2004.04.020Search in Google Scholar PubMed

[16] G. D. Diana, P. M. Carabateas, R. E. Johnson, G. L. Williams, F. Pancic, J. C. Collins, J. Med. Chem.1978, 21, 889.10.1021/jm00207a010Search in Google Scholar PubMed

[17] R. K. Maheshwari, A. K. Singh, J. Gaddipati, R. C. Srimal, Life Sci.2006, 78, 2081.10.1016/j.lfs.2005.12.007Search in Google Scholar PubMed

[18] H. Foks, D. Pancechowska-Ksepko, A. Kędzia, Z. Zwolska, M. Janowiec, E. Augustynowicz-Kopeć, Il Farmaco2005, 60, 513.10.1016/j.farmac.2005.05.002Search in Google Scholar PubMed

[19] M. M. Ghorab, A. Y. Hassan, Phosphorus Sulfur Silicon Relat. Elem.1998, 141, 251.10.1080/10426509808033737Search in Google Scholar

[20] M. Dardenne, J. M. Pléau, B. Nabarra, P. Lefrancier, M. Derrien, J. Choay, J. F. Bach, Proc. Natl. Acad. Sci. USA1982, 79, 5370.10.1073/pnas.79.17.5370Search in Google Scholar PubMed PubMed Central

[21] O. Bermingham-Mcdonogh, E. B. Gralla, J. S. Valentine, Proc. Natl. Acad. Sci. USA1988, 85, 4789.10.1073/pnas.85.13.4789Search in Google Scholar PubMed PubMed Central

[22] A. H. Shankar, A. S. Prasad, Am. J. Clin. Nutr.1998, 68, 447S.10.1093/ajcn/68.2.447SSearch in Google Scholar PubMed

[23] A. A. Adeniyi, P. A. Ajibade, Molecules2013, 18, 3760.10.3390/molecules18043760Search in Google Scholar PubMed PubMed Central

[24] K. Nakamoto, Infrared and Raman Spectra of Inorganic and Coordination Compounds, John Wiley, Hoboken, 2009, pp. 259–260.10.1002/9780470405888Search in Google Scholar

[25] F. Marandi, J. Mol. Struct.2014, 1059, 75.10.1016/j.molstruc.2013.11.035Search in Google Scholar

[26] M. Hakimi, Z. Mardani, K. Moeini, E. Schuh, F. Mohr, Z. Naturforsch.2013, 68b, 267.10.5560/znb.2013-2294Search in Google Scholar

[27] Z. Mardani, V. Golsanamlou, S. Khodavandegar, K. Moeini, A. M. Z. Slawin, J. D. Woollins, J. Coord. Chem.2018, 71, 120.10.1080/00958972.2018.1426852Search in Google Scholar

[28] M. Sánchez-Serratos, J. R. Álvarez, E. González-Zamora, I. A. Ibarra, J. Mex. Chem. Soc.2016, 60, 43.10.29356/jmcs.v60i2.72Search in Google Scholar

[29] D. Williams, Acta Crystallogr.1966, 21, 340.10.1107/S0365110X66002901Search in Google Scholar

[30] F. Marandi, K. Moeini, B. Mostafazadeh, H. Krautscheid, Polyhedron2017, 133, 146.10.1016/j.poly.2017.05.029Search in Google Scholar

[31] F. Marandi, K. Moeini, S. Ghasemzadeh, Z. Mardani, C. K. Quah, W.-S. Loh, J. Mol. Struct.2017, 1149, 92.10.1016/j.molstruc.2017.06.039Search in Google Scholar

[32] G. Jones, P. Willett, R. C. Glen, A. R. Leach, R. Taylor, J. Mol. Biol.1997, 267, 727.10.1006/jmbi.1996.0897Search in Google Scholar PubMed

[33] F. Marandi, F. Amoopour, I. Pantenburg, G. Meyer, J. Mol. Struct.2010, 973, 124.10.1016/j.molstruc.2010.03.056Search in Google Scholar

[34] Apex-II (version 1-0), Bruker AXS Inc., Madison, WI (USA), 2009.Search in Google Scholar

[35] G. Sheldrick, Acta Crystallogr.2008, A64, 112.10.1107/S0108767307043930Search in Google Scholar PubMed

[36] L. J. Farrugia, J. Appl. Crystallogr.1997, 30, 565.10.1107/S0021889897003117Search in Google Scholar

[37] M. N. Burnett, C. K. Johnson, Ortep-III, Report ORNL-6895. Oak Ridge National Laboratory, Oak Ridge, TN (USA) 1996.Search in Google Scholar

[38] G. Bergerhof, M. Berndt, K. Brandenburg, J. Res. Natl. Stand. Technol.1996, 101, 221.10.6028/jres.101.023Search in Google Scholar PubMed PubMed Central

[39] A. Gavezzotti, Acc. Chem. Res.1994, 27, 309.10.1021/ar00046a004Search in Google Scholar

[40] J. Vansant, G. Smets, J. P. Declercq, G. Germain, M. Van Meerssche, J. Org. Chem.1980, 45, 1557.10.1021/jo01297a002Search in Google Scholar

[41] D. E. Williams, Acta Crystallogr.1966, 21, 340.10.1107/S0365110X66002901Search in Google Scholar

Received: 2018-02-18
Accepted: 2018-03-30
Published Online: 2018-05-03
Published in Print: 2018-06-27

©2018 Walter de Gruyter GmbH, Berlin/Boston

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