Home Physical Sciences Crystal structure of (E)-4-(4-ethylbenzylidene)-6,8-dimethoxy-3,4-dihydrobenzo[b]oxepin-5(2H)-one, C21H22O4
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Crystal structure of (E)-4-(4-ethylbenzylidene)-6,8-dimethoxy-3,4-dihydrobenzo[b]oxepin-5(2H)-one, C21H22O4

  • Wen-Xin Zhu , De-Li Xia , Yu-Hao Miao , Yu-Xin Pan , Qing-Guo Meng and Gui-Ge Hou ORCID logo EMAIL logo
Published/Copyright: May 23, 2025

Abstract

C21H22O4, orthorhombic, Pbca (no. 61), a = 9.1326(5) Å, b = 14.0165(9) Å, c = 26.9851(19) Å, V = 3454.3(4) Å3, Z = 8, R gt(F) = 0.0433 (2685), wR ref(F 2) = 0.0965, T = 293 K.

CCDC no.: 2431765

The molecular structure is shown in the figure. Displacement ellipsoids are drawn at the 50 % probability level. There is a drug molecule.

Table 1 contains the crystallographic data and the list of the atoms including atomic coordinates and displacement parameters can be found in the cif-file attached to this article.

Table 1:

Data collection and handling.

Crystal: Colourless block
Size: 0.16 × 0.13 × 0.12 mm
Wavelength: Cu Kα radiation (1.54178 Å)
μ: 0.89 mm−1
Diffractometer, scan mode: Rigaku, ω scan
θ max, completeness: 74.3°, 100 %
N(hkl)measured, N(hkl)unique, R int: 9625, 3779, 0.031
Criterion for I obs, N(hkl)gt: I obs > 2 σ(I obs), 3421
N(param)refined: 264
Programs: Rigaku, 1 SHELX 2 , 3

1 Source of material

According to the literature methods, 4 , 5 a mixture of 3,5-dimethoxyphenol (15.42 g, 0.1 mol), ethyl 4-bromobutyrate (21.72 g, 0.12 mol), potassium carbonate (41.46 g, 0.3 mol), KI (3.32 g, 20 mmol) and N,N-dimethylformamide (300 mL) was added to a round-bottom flask. The reaction was stirred at 353 K for about 5 h. After cooling, the mixture was acidified with dilute HCl (1 M), extracted with ethyl acetate (3 × 50 mL), and dried over anhydrous Na2SO4. The solvent was removed under reduced pressure, and the residue was purified by silica gel column chromatography (petroleum ether/ethyl acetate = 5:1, v:v) to afford the intermediate 6,8-dimethoxy-3,4-dihydrobenzo[b]oxepin-5 (2H)-one. Subsequently, this intermediate (1.11 g, 5.0 mmol) and 5-bromo-2-hydroxybenzaldehyde (1.01 g, 5.0 mmol) were dissolved in ethanol (25 mL). A solution of 10 % NaOH (5 mL) was added and the mixture stirred for about 12 h at 333 K. The reaction progress was monitored by thin-layer chromatography (TLC, hexane/ethyl acetate = 3:1, v:v). After cooling to room temperature, the mixture was adjusted to pH 5 using concentrated hydrochloric acid. The precipitate was collected and purified on a silica gel column using petroleum ether/EtOAc (10:1, v:v) as eluent. The precipitate obtained by suction filtration was rinsed with 50 % methanol. After drying, recrystallization from a dichloromethane and methanol solution (4 mL, 1:1, v:v) yielded (E)-4-(4-ethylbenzylidene)-6,8-dimethoxy-3,4-dihydrobenzo[b]oxepin-5(2H)-one as colourless crystals.

2 Experimental details

The H atoms were placed in idealized positions and treated as riding on their parent atoms, with d(C–H) = 0.96 Å (methyl), U iso(H) = 1.5U eq(C), and d(C–H) = 0.97 Å (methylene), U iso(H) = 1.2U eq(C), and d(C–H) = 0.93 Å (aromatic), U iso(H) = 1.2U eq(C).

3 Comment

The structure of title compound features key functional groups and structural motifs that correlate with its potential bioactivity. Its core skeleton is benoxacycloheptenone, and the C(1) site ketocarbonyl group (C=O) is the key polar site, which may target key proteins such as kinases, HDACs, TrxR, proteases, nuclear receptors and HSP90 through hydrogen bond covalently or metal coordination. 4 The rigidity and hydrophobicity of the benzo-rings further optimize the binding selectivity and efficacy in the treatment of anti-tumor, antiviral and metabolic diseases. 6 At the same time, the α,β-unsaturated ketone is formed with the C(2) position (E)-configuration benzylidene double bond, giving it the potential to act as a Michael receptor, which can covalently interact with mercapto-containing biomolecules, thereby inhibiting bioactive groups. 7 , 8 The methoxyl group at the C(7) and C(9) position can target cyclooxygenase or microbial enzymes, and has anti-inflammatory and antibacterial activity. Methoxyl can also reduce the rate of oxidative metabolism, prolong the half-life, and improve the stability of metabolism. 9 , 10

Single crystal structure analysis shows that there is only one molecule in the asymmetric unit of the title compound (cf. figure). The bond lengths and bond angles are within the normal range. The skeleton of the entire molecule is a benzoxepane derivative. The skeleton contains a heteroatomic oxygen. In this seven-membered ring, the bond lengths of C(1)–C(10), C(1)–C(2), C(2)–C(3), C(3)–C(4), C(4)–O(2), and O(2)–C(5) are 1.493(2) Å, 1.497(2) Å, 1.505(2) Å, 1.519(2) Å, 1.4446(19) Å, and 1.3885(19) Å, respectively. This benzoxepane ring is not coplanar and the corresponding torsion angles of C(10)–C(1)–C(2)–C(3), C(1)–C(2)–C(3)–C(4), C(2)–C(3)–C(4)–O(2), and C(3)–C(4)–O(2)–C(5) are −175.86(14)°, −74.33(18)°, 41.96(19)°, and 50.55(18)°, respectively. 11 There are two methoxy substitutions at the C(7) and C(9) positions of the molecule. At the C(2) position, there is a double-bonded substituted benzene ring that combines with the original carbonyl group to form an α,β-unsaturated ketone unit. 12 The bond lengths of C(1)=O(1) and C(2)=C(13) are 1.224(2) Å and 1.335(2) Å, respectively. The torsion angle of C(1)–C(2)–C(13)–C(14) is −179.03(16)°, which demonstrated the E stereochemistry of the olefinic double bond. 13 , 14 In addition, at the para-position of the benzene ring, there is an ethyl substituent. Overall, this distorted conformation may increase the possibility of interaction with biologically active molecules, resulting in enhanced biological activity. 15 , 16


Corresponding author: Gui-Ge Hou, School of Pharmacy, Binzhou Medical University, Yantai, 264003, P.R. China, E-mail:

Acknowledgments

This work was supported by Shandong Laboratory Program (No. SYS202205), Shandong Provincial Natural Science Foundation (Nos. ZR2022MH159 and ZR2023MH190) and Shandong Province Science and Technology-based Small and Medium-sized Enterprises Innovation Capacity Enhancement Project (No. 2023TSGC0870).

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Received: 2025-04-08
Accepted: 2025-05-13
Published Online: 2025-05-23
Published in Print: 2025-08-26

© 2025 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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