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2D Hydrogen-bonded polymer assembled by zinc(II) tetraaza macrocyclic complex and 1,2-cyclopentanedicarboxylic acid

  • Ki-Young Choi EMAIL logo
Published/Copyright: October 2, 2014

Abstract

The self-assembly of [Zn(L)(H2O)2]·Cl2 and 1,2-cyclopentanedicarboxylic acid generates a 2D hydrogen-bonded polymer [Zn(L)(Hcpdc)] (L=3,14-dimethyl-2,6,13,17-tetraazatricyclo[14,4,01.1807.12]docosane, H2 cpdc= 1,2-cyclopentanedicarboxylic acid) (1). Complex 1 is characterized by X-ray crystallography, spectroscopy, and thermogravimetric analyzer. The crystal structure of 1 shows a distorted octahedral coordination geometry around the zinc (II) ion, with the four secondary amines of the macrocycle and two carboxylate oxygen atoms of the Hcpdc- ligand in the trans position. The compound crystallizes in the monoclinic system P21/c with a=8.6002(10), b=10.4906(11), c=19.008(2) Å, β (°)=92.949(7)°, V=1712.6(3) Å3, Z=2. The IR spectrum and TGA behavior of the compound are significantly affected by the Hcpdc- ligand.

Introduction

The self-assembly of the coordination polymers with specific network topologies has received great attention due to its potential usage in many areas of science and technology (Tecila et al., 1990; Tsukube et al., 1991; Lehn et al., 1992; Lawrence et al., 1995; Choi et al., 1999a,b; Cotton et al., 2001; Lu et al., 2001; Park et al., 2007a,b; Kim et al., 2008; Kwag et al. 2010a,b; Sen et al., 2013). Especially, hydrogen bonding is one of the key interactions for the process of molecular aggregation and recognition in nature, which creates novel structures of molecular assembly (Lehn et al., 1992). For example, the compound [Ni(L)(H2O)2]0.5[Ni(L)(H2O)2]0.5 (L=3,14-dimethyl-2,6,13,17-tetraazatricyclo[14,4,01.18,07.12]docosane) assembles in the solid state to form a 1D chain linked by an intermolecular hydrogen bond (Choi et al., 1999b). In addition, a 3D supramolecular network [Ni(cyclam)(H2O)2]3[(btc)3]2⋅24H2O (btc=1,3,5-benzenetricarboxylate) was assembled by [Ni(cyclam)(H2O)2]2+ and btc3- ligand in water via hydrogen bonds, which is regarded as a molecular floral lace (Choi et al., 1999a). The hydrogen-bonding interactions, therefore, play a significant role in aligning the molecules and the polymer strands in the crystalline solids.

In the present paper, we report the synthesis, crystal structure, and chemical properties of the 2D hydrogen bonded polymer [Zn(L)(Hcpdc)2] (1), which was assembled by [Zn(L)(H2O)2]·Cl2 (L=3,14-dimethyl-2,6,13,17-tetraazatricyclo[14,4,01.18,07.12]docosane) and 1,2-cyclopentanedicarboxylic acid (H2 cpdc). The structure of L ligand is shown in Scheme 1.

Scheme 1 3,14-dimethyl-2,6,13,17-tetraazatricyclo[14,4,01.1807.12]-docosane (L).
Scheme 1

3,14-dimethyl-2,6,13,17-tetraazatricyclo[14,4,01.1807.12]-docosane (L).

Results and discussion

An Oak Ridge Thermal Ellipsoid Plot (ORTEP) (Farrugia, 1997) of [Zn(L)(Hcpdc)2] (1) with the atomic numbering scheme is shown in Figure 1. selected bond lengths and angles are listed in Table 1. The macrocyclic ligand skeleton of the present compound takes the trans-III(R,R,S,S) conformation with two chair six-membered and two gauche five-membered chelate rings. The zinc atom lies on a center of inversion. The coordination environment around the central zinc(II) ion is described as a distorted octahedron with four Zn-N bonds from the macrocycle and two Zn-O bonds from Hcpdc- ligand. The zinc atom and four N atoms of the macrocycle are exactly in a plane. The Zn-N (secondary amine) distance of 2.077(2) and 2.118(2) Å is similar to that observed for octahedral zinc(II) complexes with 14-membered tetraaza macrocycle ligands (Choi, 1998a; Choi et al., 1997, 1998b). The axial Zn-O(1) distance of 2.290(1) Å is slightly longer than the equatorial Zn-N bond distances, giving an axially elongated octahedral geometry. The N-Zn-N angles of the six-membered chelate ring are larger than those of the five-membered chelate ring. Furthermore, the axial Zn-O(1) linkage is not perpendicular to the ZnN4 plane with N(1)-Zn-O(1) and N(2)-Zn-O(1) angles of 97.58(6) and 86.88(6)°, respectively. The Zn-O(1)-C(11) angle and C(11)-O(1) distance relative to the Hcpdc- ligand are 126.1(1)° and 1.260(2) Å, respectively. The deprotonated one among the two Hcpdc- carboxylic groups is bonded to the zinc atom. Interestingly, the two secondary amines N(1) and N(2) form intramolecular hydrogen bonds with the carboxylate oxygen atoms of Hcpdc- ligand [N(1)-H(1)…O(4)iv 3.022(2) Å, 157.5°; N(2)-H(2)…O(2)iv 2.799(2) Å, 153.0°; symmetry code (iv): -x+1, -y, -z+2]. Furthermore, the protonated oxygen atom O(3) in the Hcpdc- ligand forms the intermolecular hydrogen bond to an adjacent deprotonated oxygen atom O(2) of the Hcpdc- [O(3)-H(3)…O(2)v; 2.515(2) Å, 159(3)°; symmetry code (v): -x+1, y-1/2, -z+3/2-x+3/2, y+1/2, -z+3/2]. This interaction gives rise to a 2D hydrogen-bonded polymer (Figure 2 and Table 2).

Figure 1 An ORTEP drawing (30% probability ellipsoids) of [Zn(L)(Hcpdc)2] (1) with the atomic numbering scheme.The hydrogen bonds are shown as dashed lines.
Figure 1

An ORTEP drawing (30% probability ellipsoids) of [Zn(L)(Hcpdc)2] (1) with the atomic numbering scheme.

The hydrogen bonds are shown as dashed lines.

Table 1

Selected bond distances (Å) and angles (°) for [Zn(L)(Hcpdc)2] (1).

Zn-N(1)2.117(2)Zn-N(2)2.077(2)
Zn-O(1)2.290(1)C(11)-O(1)1.259(2)
C(11)-O(2)1.260(2)C(17)-O(3)1.313(2)
C(17)-O(4)1.220(2)
N(1)-Zn-N(2)96.21(6)N(1)-Zn-N(2)iv83.79(6)
N(1)-Zn-O(1)97.54(5)N(2)-Zn-O(1)86.87(5)
N(1)iv-Zn-O(1)82.46(5)N(2)iv-Zn-O(1)93.13(5)
Zn-O(1)-C(11)126.3(1)O(1)-C(11)-O(2)123.7(2)
O(3)-C(17)-O(4)123.6(2)

Symmetry codes: (i) x+1, y, z; (ii) x, y+1, z; (iii) -x+1, y+1/2, -z+3/2; (iv) -x+1, -y, -z+2.

Figure 2 A packing diagram of [Zn(L)(Hcpdc)2] (1).The hydrogen bonds are shown as dashed lines.
Figure 2

A packing diagram of [Zn(L)(Hcpdc)2] (1).

The hydrogen bonds are shown as dashed lines.

Table 2

Hydrogen bonding parameters (Å, °) for [Zn(L)(Hcpdc)2] (1).

D-H…AD-H (Å)H…A (Å)D…A (Å)D-H…A (°)
N(1)-H(1)…O(4)iv0.87(2)2.21(2)3.024(2)156(2)
N(2)-H(2)…O(2)iv0.89(2)1.95(2)2.800(2)159(2)
O(3)-H(3)…O(2)v0.86(3)1.69(3)2.514(2)160(3)

Symmetry codes: (iv) -x+1, -y, -z+2; (v) -x+1, y-1/2, -z+3/2.

The IR spectrum of 1 shows a band at 3126 cm-1 corresponding to the ν(NH) of the coordinated secondary amines of the macrocycle. Two strong bands exhibit νas(COO) stretching frequency at 1617 cm-1 and νsym(COO) at 1372 cm-1, respectively. The value of Δν (245 cm-1) indicates that the carboxylate groups coordinated to the zinc(II) ion only as a monodentate ligand (Bakalbassis et al., 1991; Cao et al., 2002). The TGA diagram of 1 further supports the structure determined by X-ray diffraction method (Figure 3). The compound was heated in the temperature range 25–900°C in nitrogen gas. The first weight loss is observed from 266 to 342°C, which is due to the loss of two Hcpdc- ligands (observed, 40.3%; calculated, 41.6%). A second weight loss corresponding to the macrocycle (observed, 46.1%; calculated, 47.0%) is found in the temperature range 342–510°C. Further weight loss is observed in the temperature range 510–900°C corresponding to the ZnO residue (observed, 11.1%; calculated, 11.4%). The formation of ZnO accompanies the decomposition of the macrocycle ligand in the zinc(II) complex (Dong et al., 1999).

Figure 3 Thermogravimetric curve of [Zn(L)(Hcpdc)2] (1).
Figure 3

Thermogravimetric curve of [Zn(L)(Hcpdc)2] (1).

Conclusions

The crystal structure of complex 1 shows a distorted octahedral coordination geometry around the zinc (II) ion, with the four secondary amines of the macrocycle and two carboxylate oxygen atoms of the Hcpdc- ligand in the trans position. Interestingly, the intramolecular and intermolecular hydrogen bonds in the complex generate a 2D hydrogen-bonded polymer. The IR spectrum and TGA behavior of the compound are significantly affected by the Hcpdc- ligand.

Experimental section

Materials and physical measurements

All chemicals used in the syntheses were of reagent grade and were used without further purification. The macrocycle 3,14-dimethyl-2,6,13,17-tetraazatricyclo[14,4,01.18,07.12]docosane (L) was prepared according to the literature method (Kang et al., 1991). IR spectra were recorded with a Perkin-Elmer Paragon 1000 FT-IR spectrophotometer (Perkin Elmer, Waltham, MA, USA) using KBr pellets. DSC and TGA (Mettler Toledo, Lausanne, Switzerland) were performed under flowing nitrogen at a heating rate of 10°C min-1 using an SDT 2960 Thermogravimetric Analyzer. Elemental analyses (C, H, N) were performed on a Perkin-Elmer CHN analyzer.

Synthesis of [Zn(L)(Hcpdc)2] (1)

To an aqueous solution (20 mL) of [Zn(L)(H2O)2]·Cl2 (254 mg, 0.5 mmol) (Choi et al., 1997) was added sodium 1,2-cyclopentanedicarboxylate (202 mg, 1.0 mmol) in water (10 mL). The mixture was heated to reflux for 1 h and then cooled to room temperature. The solution was filtered to remove insoluble material. After, the filtrate was allowed to stand at room temperature until silver crystals formed. The product was recrystallized from hot water. Yield: 437 mg (61%). Calc. (found) for C34H58N4O8Zn: C, 57.02 (57.14); H, 8.16 (8.23); N, 7.82 (7.71)%. IR (KBr, cm-1): ν(NH) 3126 cm-1, νas(COO) 1617 cm-1, νsym (COO) 1372 cm-1. mp=312°C.

X-ray crystallography

Single crystal X-ray diffraction measurement for 1 was carried out on a Bruker APEX II CCD diffractometer using graphite-monochromated Mo-Kα radiation (λ=0.71073 Å). Intensity data were measured at 100(2) K by the ω-2θ technique. Accurate cell parameters and an orientation matrix were determined by the least-squares fit of 25 reflections. The intensity data were corrected for Lorentz and polarization effects. An empirical absorption correction was applied with the SADABS program (Sheldrick, 1996). The structure was solved by direct methods (Sheldrick, 2008a), and the least-squares refinement of the structure was performed by the SHELXL-97 program (Sheldrick, 2008b). All atoms except all hydrogen atoms were refined anisotropically. The hydrogen atoms were placed in calculated positions, allowing them to ride on their parent C atoms with Uiso(H)=1.2Ueq(C or N). The crystallographic data, conditions used for the intensity collection, and some features of the structure refinement are listed in Table 3. Crystallographic data for the structural analysis have been deposited with the Cambridge Crystallographic Data Center, CCDC No. 1008195, for 1. Copies of this information may be obtained free of charge from the Director, CCDC, 12 Union Road, Cambridge, CB2 1EZ, UK (fax: +44-1223-336033; e-mail: or http://www.ccdc.cam.ac.uk).

Table 3

Crystallographic data for [Zn(L)(Hcpdc)2] (1).

Empirical formulaC34H58N4O8Zn
Formula weight716.21
Temperature (K)100(2)
Crystal color/habitSilver/block
Crystal systemMonoclinic
Space groupP21/c
Unit cell dimensions
a (Å)8.6002(10)
b (Å)10.4906(11)
c (Å)19.008(2)
β (°)92.949(7)
V3)1712.6(3)
Z2
Dcalc (Mg m-3)1.389
Absorption coefficient (mm-1)0.774
F(000)768
Crystal size (mm3)0.20×0.10×0.02
θ range (°)2.15–28.40
Limiting indices-11≤h≤11, -14≤k≤8, -25≤l≤22
Reflection collected/unique16114/4281 (Rint=0.0395)
Reflection used4998
Absorption correctionSADABS
Max./min. transmission0.9847 and 0.8606
Data/restraints/parameters4281/0/226
Goodness of fit on F21.041
Final R indices [I>2σ(I)]R1a=0.0383, wR2b=0.0822
R indices (all data)R1=0.0504, wR2=0.0891
Weighting schemew=1/[σ2(Fo2)+(0.0347P)2+0.9081P]with P=(Fo2+2Fc2)/3
Largest difference peak and hole (eÅ-3)0.379 and -0.504

aR1=Σ∣∣ Fo ∣-∣ Fc ∣∣/Σ∣ Fo ∣.

bwR2=[Σ[w(Fo2-Fc2)2]/Σ[w(Fo2)2]]1/2.


Corresponding author: Ki-Young Choi, Department of Chemistry Education, Kongju National University, Kongju 314-701, Republic of Korea, e-mail:

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Received: 2014-6-16
Accepted: 2014-9-10
Published Online: 2014-10-2
Published in Print: 2014-12-1

©2014 by De Gruyter

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