Background : Single nucleotide polymorphisms (SNPs) of mitochondrial DNA (mtDNA) are involved in physiological and pathological conditions. We developed a rapid, accurate, highly sensitive and high-throughput approach with low cost to identify mtDNA SNPs. Methods : Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) was used to detect 18 SNPs of mtDNA by uniplex and multiplex assays. The sensitivity and specificity of the MALDI-TOF MS were evaluated. The accuracy of the approach was validated by the comparison of using the robust sequencing analysis. Results : The detection limit achieved with the assays corresponded to the identification of five-genome equivalence of mtDNA per reaction after first round PCR amplification. The testing system enabled the discrimination of as little as 5% of mtDNA polymorphism in the predominating background of mtDNA not containing the SNP. No false positive and false negative results were obtained using the uniplex and multiplex MALDI-TOF MS assays for the analysis of the 18 SNPs compared with those obtained by sequencing analysis. Conclusions : Possible fields which could benefit from this powerful and sensitive tool include forensic medicine, tracing of matrilineage, transplantation immunology, transfusion medicine, the diagnosis of mtDNA mutation related disorders, and the research regarding aging, apoptosis and carcinogenesis based on physiologic and pathogenic alterations of mtDNA for the analysis of large-scale samples, multiple SNPs or rare mtDNA. Clin Chem Lab Med 2008;46:299–305.
Contents
- Genetics and Molecular Diagnostics
-
Requires Authentication UnlicensedA rapid and accurate approach to identify single nucleotide polymorphisms of mitochondrial DNA using MALDI-TOF mass spectrometryLicensedFebruary 6, 2008
-
Requires Authentication UnlicensedAn association study of sodium-lithium countertransport activity with glutathione S transferase (GST) T1 and GST M1 null polymorphisms in Greek dyslipidaemic patients and controlsLicensedFebruary 6, 2008
-
Requires Authentication UnlicensedSize distribution of circulating cell-free DNA in sera of breast cancer patients in the course of adjuvant chemotherapyLicensedFebruary 6, 2008
-
Requires Authentication UnlicensedSuitability of the PAXgene™ system to stabilize bone marrow RNA in imatinib-resistant patients with chronic myeloid leukemiaLicensedMarch 1, 2008
-
Requires Authentication UnlicensedGenetic polymorphisms of alcohol metabolising enzymes: their role in susceptibility to oesophageal cancerLicensedFebruary 6, 2008
-
Requires Authentication Unlicensed5′ ins/del and 3′ VNTR polymorphisms in the apolipoprotein B gene in relation to lipids and coronary artery diseaseLicensedFebruary 6, 2008
- General Clinical Chemistry and Laboratory Medicine
-
Requires Authentication UnlicensedIsolation and biochemical characterization of plasma monoclonal free light chains in amyloidosis and multiple myeloma: a pilot study of intact and truncated forms of light chains and their charge propertiesLicensedFebruary 6, 2008
-
Requires Authentication UnlicensedSimple method for determining human serum 2,2-diphenyl-1-picryl-hydrazyl (DPPH) radical scavenging activity – possible application in clinical studies on dietary antioxidantsLicensedFebruary 6, 2008
-
Requires Authentication UnlicensedThyroid-related autoantibodies in Tunisian patients with coeliac diseaseLicensedMarch 1, 2008
-
Requires Authentication UnlicensedA dried serum spot assay for vitamin B12LicensedMarch 1, 2008
-
Requires Authentication UnlicensedAcute-phase response proteins are related to cachexia and accelerated angiogenesis in gastroesophageal cancersLicensedMarch 1, 2008
-
Requires Authentication UnlicensedVitamin D binding protein, a new nutritional marker in cystic fibrosis patientsLicensedMarch 1, 2008
-
Requires Authentication UnlicensedEffects of total cholesterol and triglyceride on the percentage difference between the low-density lipoprotein cholesterol concentration measured directly and calculated using the Friedewald formulaLicensedFebruary 6, 2008
-
Requires Authentication UnlicensedGallstone analysis using Fourier transform infrared spectroscopy (FT-IR)LicensedFebruary 6, 2008
-
Requires Authentication UnlicensedCoenzyme Q10 and high-sensitivity C-reactive protein in ischemic and idiopathic dilated cardiomyopathyLicensedFebruary 6, 2008
-
Requires Authentication UnlicensedIncreased plasma asymmetric dimethylarginine (ADMA) levels in retinal venous occlusive diseaseLicensedFebruary 6, 2008
-
Requires Authentication UnlicensedEffects of extended-release felodipine on endothelial vasoactive substances in patients with essential hypertensionLicensedMarch 1, 2008
- Reference Values
-
Requires Authentication UnlicensedLithium heparinised blood-collection tubes give falsely low albumin results with an automated bromcresol green method in haemodialysis patientsLicensedFebruary 6, 2008
-
Requires Authentication UnlicensedInfrequency of low red blood cell (RBC) folate levels despite no folate fortification program: a study based on results from routine requests for RBC folateLicensedFebruary 6, 2008
- Validation and Outcome Studies
-
Requires Authentication UnlicensedA new serum cystatin C-based equation for assessing glomerular filtration rate in liver transplantationLicensedFebruary 6, 2008
-
Requires Authentication UnlicensedDevelopment of des-γ-carboxy prothrombin (DCP) measuring reagent using the LiBASys clinical analyzerLicensedFebruary 6, 2008
- Letters to the Editor
-
Requires Authentication UnlicensedHigh oxygen-affinity hemoglobin variant associated with high-level venous oxygen saturationLicensedMarch 1, 2008
-
Requires Authentication UnlicensedInterference in urinary free cortisol determination by components of the NuvaRing® contraceptive deviceLicensedMarch 1, 2008
-
Requires Authentication UnlicensedThe neutral protease chymase degrades apolipoprotein E from high-density lipoproteinsLicensedMarch 1, 2008
-
Requires Authentication UnlicensedUnclear results in the article by Wolff and Gerritzen in Clin Chem Lab Med 2007;45(7):917–922LicensedMarch 1, 2008
-
Requires Authentication UnlicensedPotassium report of hemolyzed serum samplesLicensedMarch 1, 2008
-
Requires Authentication UnlicensedReply to the letter by Carraro: appropriate actions in the detection of haemolytic specimensLicensedMarch 1, 2008