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Preservation of organic matter in nontronite against iron redox cycling

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Published/Copyright: January 9, 2016
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Abstract

It is generally believed that clay minerals can protect organic matter from degradation in redox active environments, but both biotic and abiotic factors can influence the redox process and thus potentially change the clay-organic association. However, the specific mechanisms involved in this process remain poorly understood. In this study, model organic compound 12-Aminolauric acid (ALA) was selected to intercalate into the structural interlayer of nontronite (an iron-rich smectite, NAu-2) to form an ALA-intercalated NAu-2 composite (ALA-NAu-2). Shawanella putrefaciens CN32 and sodium dithionite were used to reduce structural Fe(III) to Fe(II) in NAu-2 and ALA-NAu-2. The bioreduced ALA-NAu-2 was subsequently re-oxidized by air. The rates and extents of bioreduction and air re-oxidation were determined with wet chemistry methods. ALA release from ALA-NAu-2 via the redox process was monitored. Mineralogical changes after iron redox cycle were investigated with X-ray diffraction, infrared spectroscopy, and scanning and transmission electron microscopy. At the beginning stage of bioreduction, S. putrefaciens CN32 reductively dissolved small and poorly crystalline particles and released intercalated ALA, resulting a positive correlation between ALA release and iron reduction extent (<12%). The subsequent bioreduction (reduction extent from 12∼30%) and complete air re-oxidation showed no effect on ALA release. These results suggest that released ALA was largely from small and poorly crystalline NAu-2 particles. In contrast to bioreduction, chemical reduction did not exhibit any selectivity in reducing ALA-NAu-2 particles, and a considerable amount of reductive dissolution was responsible for a large amount of ALA release (>80%). Because bacteria are the principal agent for mediating redox process in natural environments, our results demonstrated that the structural interlayer of smectite can serve as a potential shelter to protect organic matter from oxidation.

Acknowledgments

This work was supported by grants from the National Basic Research Program of China (No. 2012CB822004) and the Natural National Science Foundation of China (41030211, 41572328). We thank Peng Yuan at the Institute of Geochemistry, Chinese Academy of Science for help in ALA-nontronite synthesis. We are grateful to two anonymous reviewers whose comments improved the quality of the manuscript.

References cited

Abken, H.J., Tietze, M., Brodersen, J., Bäumer, S., Beifuss, U., and Deppenmeier, U. (1998) Isolation and characterization of methnophenazine and function of phenazines in membrane-bound elevtron transport of Methanosarcina mazi Gö1. Journal of Bacteriology, 180, 2027–2032.10.1128/JB.180.8.2027-2032.1998Search in Google Scholar

Alexandre, M., and Dubois, P. (2000) Polymer-layered silicate nanocomposites: preparation, properties and uses of a new class of materials. Materials Science and Engineering: R: Reports, 28, 1–63.10.1016/S0927-796X(00)00012-7Search in Google Scholar

Aller, R.C. (1994) Bioturbation and remineralization of sedimentary organic matter: effects of redox oscillation. Chemical Geology, 114, 331–345.10.1016/0009-2541(94)90062-0Search in Google Scholar

Amonette, J.E., and Templeton, J.C. (1998) Improvements to the quantitative assay of nonrefractory minerals for Fe (II) and total Fe using 1, 10-phenanthroline. Clays and Clay Minerals, 46, 51–62.10.1346/CCMN.1998.0460106Search in Google Scholar

Arnarson, T.S., and Keil, R.G. (2001) Organic–mineral interactions in marine sediments studied using density fractionation and X-ray photoelectron spectroscopy. Organic Geochemistry, 32, 1401–1415.10.1016/S0146-6380(01)00114-0Search in Google Scholar

Arnarson, T.S., and Keil, R.G. (2007) Changes in organic matter–mineral interactions for marine sediments with varying oxygen exposure times. Geochimica et Cosmochimica Acta, 71, 3545–3556.10.1016/j.gca.2007.04.027Search in Google Scholar

Baldock, J.A., and Skjemstad, J. (2000) Role of the soil matrix and minerals in protecting natural organic materials against biological attack. Organic Geochemistry, 31, 697–710.10.1016/S0146-6380(00)00049-8Search in Google Scholar

Bellucci, F., Camino, G., Frache, A., Ristori, V., Sorrentino, L., Iannace, S., Bian, X., Guardasole, M., and Vaccaro, S. (2006) Effect of organoclay impurities on mechanical properties of EVA-layered silicate nanocomposites. e-Polymers, 6, 185–194.10.1515/epoly.2006.6.1.185Search in Google Scholar

Bergamaschi, B.A., Tsamakis, E., Keil, R.G., Eglinton, T.I., Montluçon, D.B., and Hedges, J.I. (1997) The effect of grain size and surface area on organic matter, lignin and carbohydrate concentration, and molecular compositions in Peru Margin sediments. Geochimica et Cosmochimica Acta, 61, 1247–1260.10.1016/S0016-7037(96)00394-8Search in Google Scholar

Bishop, M.E., Dong, H., Kukkadapu, R.K., Liu, C., and Edelmann, R.E. (2011) Bioreduction of Fe-bearing clay minerals and their reactivity toward pertechnetate (Tc-99). Geochimica et Cosmochimica Acta, 75, 5229–5246.10.1016/j.gca.2011.06.034Search in Google Scholar

Bock, M.J., and Mayer, L.M. (2000) Mesodensity organo–clay associations in a nearshore sediment. Marine Geology, 163, 65–75.10.1016/S0025-3227(99)00105-XSearch in Google Scholar

Choi, O., Deng, K.K., Kim, N.J., Ross, L. Jr., Surampalli, R.Y., and Hu, Z. (2008) The inhibitory effects of silver nanoparticles, silver ions, and silver chloride colloids on microbial growth. Water Research, 42, 3066–3074.10.1016/j.watres.2008.02.021Search in Google Scholar

Conant, R.T., Ryan, M.G., Ågren, G.I., Birge, H.E., Davidson, E.A., Eliasson, P.E., Evans, S.E., Frey, S.D., Giardina, C.P., Hopkins, F.M., and others (2011) Temperature and soil organic matter decomposition rates–synthesis of current knowledge and a way forward. Global Change Biology, 17, 3392–3404.10.1111/j.1365-2486.2011.02496.xSearch in Google Scholar

Cui, L., Khramov, D.M., Bielawski, C.W., Hunter, D., Yoon, P., and Paul, D. (2008) Effect of organoclay purity and degradation on nanocomposite performance, Part 1: Surfactant degradation. Polymer, 49, 3751–3761.10.1016/j.polymer.2008.06.029Search in Google Scholar

Dong, H. (2012) Clay–microbe interactions and implications for environmental mitigation. Elements, 8, 113–118.10.2113/gselements.8.2.113Search in Google Scholar

Dong, H., Kukkadapu, R.K., Fredrickson, J.K., Zachara, J.M., Kennedy, D.W., and Kostandarithes, H.M. (2003) Microbial reduction of structural Fe(III) in illite and goethite. Environmental Science and Technology, 37, 1268–1276.10.1021/es020919dSearch in Google Scholar

Dong, H., Jaisi, D.P., Kim, J., and Zhang, G. (2009) Microbe-clay mineral interactions. American Mineralogist, 94, 1505–1519.10.2138/am.2009.3246Search in Google Scholar

Favre, F., Bogdal, C., Gavillet, S., and Stucki, J.W. (2006) Changes in the CEC of a soil smectite–kaolinite clay fraction as induced by structural iron reduction and iron coatings dissolution. Applied Clay Science, 34, 95–104.10.1016/j.clay.2006.04.010Search in Google Scholar

Fredrickson, J.K., Zachara, J.M., Kennedy, D.W., Dong, H., Onstott, T.C., Hinman, N.W., and Li, S.M. (1998) Biogenic iron mineralization accompanying the dissimilatory reduction of hydrous ferric oxide by a groundwater bacterium. Geochimica et Cosmochimica Acta, 62, 3239–3257.10.1016/S0016-7037(98)00243-9Search in Google Scholar

Hartnett, H.E., Keil, R.G., Hedges, J.I., and Devol, A.H. (1998) Influence of oxygen exposure time on organic carbon preservation in continental margin sediments. Nature, 391, 572–575.10.1038/35351Search in Google Scholar

Hedges, J.I., and Hare, P. (1987) Amino acid adsorption by clay minerals in distilled water. Geochimica et Cosmochimica Acta, 51, 255–259.10.1016/0016-7037(87)90237-7Search in Google Scholar

Houghton, J.T. (1996) Climate change 1995: The science of climate change: contribution of working group I to the second assessment report of the Intergovernmental Panel on Climate Change, vol. 2, p. 3–45. Cambridge University Press, U.K.Search in Google Scholar

Jaisi, D.P., Kukkadapu, R.K., Eberl, D.D., and Dong, H. (2005) Control of Fe(III) site occupancy on the rate and extent of microbial reduction of Fe(III) in nontronite. Geochimica et Cosmochimica Acta, 69, 5429–5440.10.1016/j.gca.2005.07.008Search in Google Scholar

Jaisi, D.P., Liu, C., Dong, H., Blake, R.E., and Fein, J.B. (2008) Fe2+ sorption onto nontronite (NAu-2). Geochimica et Cosmochimica Acta, 72, 5361–5371.10.1016/j.gca.2008.08.022Search in Google Scholar

Johnson, K.S., Gordon, R.M., and Coale, K.H. (1997) What controls dissolved iron concentrations in the world ocean? Marine Chemistry, 57, 137–161.10.1016/S0304-4203(97)00043-1Search in Google Scholar

Jones, D., and Edwards, A. (1998) Influence of sorption on the biological utilization of two simple carbon substrates. Soil Biology and Biochemistry, 30, 1895–1902.10.1016/S0038-0717(98)00060-1Search in Google Scholar

Kaiser, K., and Guggenberger, G. (2000) The role of DOM sorption to mineral surfaces in the preservation of organic matter in soils. Organic Geochemistry, 31, 711–725.10.1016/S0146-6380(00)00046-2Search in Google Scholar

Katti, K.S., Sikdar, D., Katti, D.R., Ghosh, P., and Verma, D. (2006) Molecular interactions in intercalated organically modified clay and clay–polycaprolactam nanocomposites: experiments and modeling. Polymer, 47, 403–414.10.1016/j.polymer.2005.11.055Search in Google Scholar

Katti, K.S., Katti, D.R., and Dash, R. (2008) Synthesis and characterization of a novel chitosan/montmorillonite/hydroxyapatite nanocomposite for bone tissue engineering. Biomedical Material, 3, 034122.10.1088/1748-6041/3/3/034122Search in Google Scholar PubMed

Keeling, J.L., Raven, M.D., and Gates, W.P. (2000) Geology and characterization of two hydrothermal nontronites from weathered metamorphic rocks at the Uley graphite mine, South Australia. Clays and Clay Minerals, 48, 537–548.10.1346/CCMN.2000.0480506Search in Google Scholar

Keil, R.G., and Mayer, L.M. (2014) Mineral matrices and organic matter. In H.D. Turekian and K.K. Holland, Ed., Treatise on Geochemistry, 2nd ed., p. 337–359. Elsevier Press, Oxford.10.1016/B978-0-08-095975-7.01024-XSearch in Google Scholar

Keil, R.G., Montluçon, D.B., Prahl, F.G., and Hedges, J.I. (1994a) Sorptive preservation of labile organic matter in marine sediments. Nature, 370, 549–552.10.1038/370549a0Search in Google Scholar

Keil, R.G., Tsamakis, E., Fuh, C.B., Giddings, J.C., and Hedges, J.I. (1994b) Mineralogical and textural controls on the organic composition of coastal marine sediments: Hydrodynamic separation using SPLITT-fractionation. Geochimica et Cosmochimica Acta, 58, 879–893.10.1016/0016-7037(94)90512-6Search in Google Scholar

Kennedy, M.J., Pevear, D.R., and Hill, R.J. (2002) Mineral surface control of organic carbon in black shale. Science, 295, 657–660.10.1126/science.1066611Search in Google Scholar PubMed

Kennedy, M., Droser, M., Mayer, L.M., Pevear, D., and Mrofka, D. (2006) Late Precambrian oxygenation; inception of the clay mineral factory. Science, 311, 1446–1449.10.1126/science.1118929Search in Google Scholar PubMed

Kleber, M., Eusterhues, K., Keiluweit, M., Mikutta, C., Mikutta, R., and Nico, P.S. (2014) Mineral–organic associations: Formation, properties, and relevance in soil environments. Advances in Agronomy, 30, 1–140.10.1016/bs.agron.2014.10.005Search in Google Scholar

Lalonde, K., Mucci, A., Ouellet, A., and Gélinas, Y. (2012) Preservation of organic matter in sediments promoted by iron. Nature, 483, 198–200.10.1038/nature10855Search in Google Scholar PubMed

Lee, K., Kostka, J.E., and Stucki, J.W. (2006) Comparisons of structural Fe reduction in smectites by bacteria and dithionite: An infrared spectroscopic study. Clays and Clay Minerals, 54, 195–208.10.1346/CCMN.2006.0540205Search in Google Scholar

Liu, M.T., Pu, M.F., Ma, H.W., Hu, Y.F., Liu, X.J., and Pang, X. (2011) The effect of organic modifier-12-aminolauric acid on morphology and thermal properties of polylactide nanocomposites. Polymer Composites, 32, 1002–1008.10.1002/pc.21119Search in Google Scholar

Liu, D., Dong, H., Wang, H., and Zhao, L. (2015) Low-temperature feldspar and illite formation through bioreduction of Fe(III)-bearing smectite by an alkaliphilic bacterium. Chemical Geology, 406, 25–33.10.1016/j.chemgeo.2015.04.019Search in Google Scholar

Lützow, M.V., Kögel-Knabner, I., Ekschmitt, K., Matzner, E., Guggenberger, G., Marschner, B., and Flessa, H. (2006) Stabilization of organic matter in temperate soils: mechanisms and their relevance under different soil conditions—a review. European Journal of Soil Science, 57, 426–445.10.1111/j.1365-2389.2006.00809.xSearch in Google Scholar

Mayer, L.M. (1994a) Relationships between mineral surfaces and organic carbon concentrations in soils and sediments. Chemical Geology, 114, 347–363.10.1016/0009-2541(94)90063-9Search in Google Scholar

Mayer, L.M. (1994b) Surface area control of organic carbon accumulation in continental shelf sediments. Geochimica et Cosmochimica Acta, 58, 1271–1284.10.1016/0016-7037(94)90381-6Search in Google Scholar

Mayer, L.M. (1999) Extent of coverage of mineral surfaces by organic matter in marine sediments. Geochimica et Cosmochimica Acta, 63, 207–215.10.1016/S0016-7037(99)00028-9Search in Google Scholar

Melton, E.D., Swanner, E.D., Behrens, S., Schmidt, C., and Kappler, A. (2014) The interplay of microbially mediated and abiotic reactions in the biogeochemical Fe cycle. Nature Reviews Micorbiology, 12, 797–808.10.1038/nrmicro3347Search in Google Scholar

Neumann, A., Petit, S., and Hofstetter, T.B. (2011) Evaluation of redox-active iron sites in smectites using middle and near infrared spectroscopy. Geochimica et Cosmochimica Acta, 75, 2336–2355.10.1016/j.gca.2011.02.009Search in Google Scholar

Neumann, A., Olson, T.L., and Scherer, M.M. (2013) Spectroscopic evidence for Fe (II)–Fe (III) electron transfer at clay mineral edge and basal sites. Environmental Science and Technology, 47, 6969–6977.10.1021/es304744vSearch in Google Scholar

Newman, D.K., and Kolter, R. (2000) A role for excreted quinones in extracellular electron transfer. Nature, 405, 94–97.10.1038/35011098Search in Google Scholar

Pentráková, L., Su, K., Pentrák, M., and Stucki, J. (2013) A review of microbial redox interactions with structural Fe in clay minerals. Clay Minerals, 48, 543–560.10.1180/claymin.2013.048.3.10Search in Google Scholar

Ransom, B., Kim, D., Kastner, M., and Wainwright, S. (1998) Organic matter preservation on continental slopes: importance of mineralogy and surface area. Geochimica et Cosmochimica Acta, 62, 1329–1345.10.1016/S0016-7037(98)00050-7Search in Google Scholar

Ribeiro, F.R., Fabris, J.D., Kostka, J.E., Komadel, P., and Stucki, J.W. (2009) Comparisons of structural iron reduction in smectites by bacteria and dithionite: II. A variable-temperature Mössbauer spectroscopic study of Garfield nontronite. Pure & Applied Chemistry, 81, 1499–1509.10.1351/PAC-CON-08-11-16Search in Google Scholar

Sikdar, D., Katti, D.R., and Katti, K.S. (2006a) A molecular model for ε-caprolactambased intercalated polymer clay nanocomposite: integrating modeling and experiments. Langmuir, 22, 7738–7747.10.1021/la060243qSearch in Google Scholar

Sikdar, D., Katti, D.R., Katti, K.S., and Bhowmik, R. (2006b) Insight into molecular interactions between constituents in polymer clay nanocomposites. Polymer, 47, 5196–5205.10.1016/j.polymer.2006.05.026Search in Google Scholar

Sikdar, D., Katti, K.S., and Katti, D.R. (2008) Molecular interactions alter clay and polymer structure in polymer clay nanocomposites. Journal of Nanoscience and Nanotechnology, 8, 1638–1657.10.1166/jnn.2008.18228Search in Google Scholar

Stucki, J.W. (2011) A review of the effects of iron redox cycles on smectite properties. Comptes Rendus Geoscience, 343, 199–209.10.1016/j.crte.2010.10.008Search in Google Scholar

Stucki, J.W., and Kostka, J.E. (2006) Microbial reduction of iron in smectite. Comptes Rendus Geoscience, 338, 468–475.10.1016/j.crte.2006.04.010Search in Google Scholar

Stucki, J.W., Bailey, G.W., and Gan, H. (1996) Oxidation-reduction mechanisms in iron-bearing phyllosilicates. Applied Clay Science, 10, 417–430.10.1016/0169-1317(96)00002-6Search in Google Scholar

Theng, B.K.G., and Newman, R. (1986) The occurrence of interlayer clay-organic complexes in two New Zealand soils. Soil Science, 142, 262–266.10.1097/00010694-198611000-00003Search in Google Scholar

Wattel-Koekkoek, E.J.W., Van Genuchten, P.P.L., Buurman, P., and Van Lagen, B. (2001) Amount and composition of clay-associated soil organic matter in a range of kaolinitic and smectitic soils. Geoderma, 99, 27–49.10.1016/S0016-7061(00)00062-8Search in Google Scholar

Weber, K.A.,Achenbach, L.A., and Coates, J.D. (2006) Microorganisms pumping iron: anaerobic microbial iron oxidation and reduction. Nature Reviews Microbiology, 4, 752–764.10.1038/nrmicro1490Search in Google Scholar PubMed

Yang, J., Kukkadapu, R.K., Dong, H. Shelobolina, E.S., Zhang, J., and Kim, J. (2012) Effects of redox cycling of iron in nontronite on reduction of technetium. Chemical Geology, 291, 206–216.10.1016/j.chemgeo.2011.10.013Search in Google Scholar

Yuan, P., Liu, H., Liu, D., Tan, D., Yan, W., and He, H. (2013) Role of the interlayer space of montmorillonite in hydrocarbon generation:An experimental study based on high temperature–pressure pyrolysis. Applied Clay Science, 75, 82–91.10.1016/j.clay.2013.03.007Search in Google Scholar

Zhang, G., Kim, J., Dong, H., and Sommer, A.J. (2007) Microbial effects in promoting the smectite to illite reaction: Role of organic matter intercalated in the interlayer. American Mineralogist, 92, 1401–1410.10.2138/am.2007.2331Search in Google Scholar

Zhang, J., Dong, H., Liu, D., and Agrawal, A. (2013) Microbial reduction of Fe(III) in smectite minerals by thermophilic methanogen Methanothermobacter thermautotrophicus. Geochimica et Cosmochimica Acta, 106, 203–215.10.1016/j.gca.2012.12.031Search in Google Scholar

Zhang, J., Dong, H., Zeng, Q., and Agrawal, A. (2014) The role of Fe(III) bioreduction by methanogens in the preservation of organic matter in smectite. Chemical Geology, 389, 16–28.10.1016/j.chemgeo.2014.09.010Search in Google Scholar

Zhao, L., Dong, H., Kukkadapu, R.K., Zeng, Q., Edelmann, R., Pentrák, M., and Agrawal, A. (2015) Biological redox cycling of iron in nontronite and its potential application in nitrate removal. Environmental Science and Technology, 49, 5493–5501.10.1021/acs.est.5b00131Search in Google Scholar PubMed

  1. Manuscript handled by Warren Huff.

Received: 2015-5-7
Accepted: 2015-7-31
Published Online: 2016-1-9
Published in Print: 2016-1-1

© 2016 by Walter de Gruyter Berlin/Boston

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