Startseite Naturwissenschaften Molecular arrangements in crystals of racemic and enantiopure forms of N-carbamoyl-2-phenylbutyramide and 2-phenylbutyramide: differences and similarities
Artikel
Lizenziert
Nicht lizenziert Erfordert eine Authentifizierung

Molecular arrangements in crystals of racemic and enantiopure forms of N-carbamoyl-2-phenylbutyramide and 2-phenylbutyramide: differences and similarities

  • Arcadius V. Krivoshein EMAIL logo , Sergey V. Lindeman , Samuel Bentum , Boris B. Averkiev , Victoria Sena und Tatiana V. Timofeeva EMAIL logo
Veröffentlicht/Copyright: 23. April 2018

Abstract

As solid drugs may be regarded as “pharmaceutical materials”, molecular pharmaceutics of such drugs is expected to benefit from application of materials science concepts. In this paper, we used a structural chemistry approach to explain the dramatic difference in solubility between two structurally related antiepileptic drugs, N-carbamoyl-2-phenylbutyramide (NC2PBA) and 2-phenylbutyramide (2PBA). Since both of these compounds are chiral, we chromatographically separated the enantiomers and examined them along with the racemic forms. A combination of experimental (single-crystal X-ray diffraction, IR spectroscopy) and computational (crystal lattice energy calculations, Hirshfeld surface analysis) techniques was employed to determine the structural differences between these two compounds in the crystalline state. We found that while NC2PBA and 2PBA have similar molecular packing arrangements, the former compound is distinguished by a more extensive network of hydrogen bonds. Thus, the higher density, higher melting point, and lower solubility of crystalline NC2PBA compared to crystalline 2PBA may be largely explained by the differences in hydrogen bonding. We also found that for each of these compounds there are no major differences in molecular packing (and, correspondingly, in crystal lattice energies) between racemic and enantiopure forms.

Acknowledgements

We thank Drs. Marina S. Fonari (Institute of Applied Physics, Chişinău, Moldova) and Victor N. Khrustalev (Peoples’ Friendship University, Moscow, Russia) for fruitful discussions of the crystallographic data reported in this paper. A. V. K. gratefully acknowledges the funding from the Welch Foundation Departmental Grant (award No. BC-0022; the PI of this grant is Dr. Daniel Z. Wang) and the University of Houston – Clear Lake Faculty Research Support Fund (to A. V. K.; award No. FRSF#1176). T. V. T., V. S., and B. B. A. were supported by a Partnership for Research and Education in Materials (PREM) grant from the National Science Foundation (to T. V. T., award No. 1523611). The Agilent UHPLC system used for the analytical separation of NC2PBA enantiomers was acquired using a Major Research Instrumentation grant from the National Science Foundation (award No. 0958901; the PI of that grant was Dr. Daniel Z. Wang).

References

[1] C. C. Sun, Materials science tetrahedron – a useful tool for pharmaceutical research and development. J. Pharm. Sci.2009, 98, 1671.10.1002/jps.21552Suche in Google Scholar

[2] C. A. Lipinski. Drug-like properties and the causes of poor solubility and poor permeability. J. Pharmacol. Toxicol. Methods2000, 44, 235.10.1016/S1056-8719(00)00107-6Suche in Google Scholar

[3] E. A. Swinyard, Acetylurea derivatives. in Antiepileptic Drugs (Eds. H.-H. Frey and D. Janz) Springer-Verlag, Berlin, p. 601, 1985.10.1007/978-3-642-69518-6_22Suche in Google Scholar

[4] J. A. Shimshoni, M. Bialer, B. Wlodarczyk, R. H. Finnell, B. Yagen, Potent anticonvulsant urea derivatives of constitutional isomers of valproic acid. J. Med. Chem.2007, 50, 6419.10.1021/jm7009233Suche in Google Scholar PubMed

[5] E. A. Swinyard, J. E. P. Toman, A comparison of the anticonvulsant actions of some phenylhydantoins and their corresponding phenylacetylureas. J. Pharmacol. Exp. Ther.1950, 100, 151.Suche in Google Scholar

[6] A. V. Krivoshein, Anticonvulsants based on the α-substituted amide group pharmacophore bind to and inhibit function of neuronal nicotinic acetylcholine receptors. ACS Chem. Neurosci.2016, 7, 316.10.1021/acschemneuro.5b00259Suche in Google Scholar PubMed

[7] V. N. Khrustalev, B. Sandhu, B. Bentum, A. Fonari, A. V. Krivoshein, T. V. Timofeeva, Absolute configuration and polymorphism of 2-phenylbutyramide and α-methyl-α-phenylsuccinimide. Cryst. Growth Des.2014, 14, 3360.10.1021/cg500284qSuche in Google Scholar PubMed PubMed Central

[8] A. Camerman, N. Camerman, Ethylphenacemide and phenacemide: conformational similarities to diphenylhydantoin and stereochemical basis of anticonvulsant activity. Proc. Natl Acad. Sci. USA1977, 74, 1264.10.1073/pnas.74.3.1264Suche in Google Scholar PubMed PubMed Central

[9] G. M. Sheldrick, Crystal structure refinement with SHELX. Acta Crystallogr.2015, A71, 3.10.1107/S2053229614024218Suche in Google Scholar

[10] H. D. Flack, On enantiomorph-polarity estimation. Acta Crystallogr.1983, A39, 876.10.1107/S0108767383001762Suche in Google Scholar

[11] R. W. W. Hooft, L. H. Straver, A. L. Spek, Determination of absolute structure using Bayesian statistics on Bijvoet differences. J. Appl. Crystallogr.2008, 41, 96.10.1107/S0021889807059870Suche in Google Scholar PubMed PubMed Central

[12] S. Parsons, H. D. Flack, T. Wagner, Use of intensity quotients and differences in absolute structure refinement. Acta Crystallogr.2013, B69, 249.10.1107/S2052519213010014Suche in Google Scholar PubMed PubMed Central

[13] A. L. Spek, Structure validation in chemical crystallography. Acta Crystallogr.2009, D65, 148.10.1107/S090744490804362XSuche in Google Scholar

[14] M. J. Turner, J. J. McKinnon, S. K. Wolff, D. J. Grimwood, P. R. Spackman, D. Jayatilaka, M. A. Spackman, CrystalExplorer17 (2017). University of Western Australia. http://hirshfeldsurface.net.Suche in Google Scholar

[15] M. A. Spackman, J. J. McKinnon, Fingerprinting intermolecular interactions in molecular crystals. CrystEngComm2002, 4, 378.10.1039/B203191BSuche in Google Scholar

[16] M. A. Spackman, D. Jayatilaka, Hirshfeld surface analysis. CrystEngComm2009, 11, 19.10.1039/B818330ASuche in Google Scholar

[17] A. Gavezzotti, Efficient computer modeling of organic materials. The atom-atom, Coulomb-London-Pauli (AA-CLP) model for intermolecular electrostatic-polarization, dispersion and repulsion energies. New J. Chem.2011, 35, 1360.10.1039/c0nj00982bSuche in Google Scholar

[18] A. Gavezzotti, Equilibrium structure and dynamics of organic crystals by Monte Carlo simulation: critical assessment of force fields and comparison with static packing analysis. New J. Chem.2013, 37, 2110.10.1039/c3nj00181dSuche in Google Scholar

[19] E. Frommel, P. Gold-Aubert, C. Fleury, Pharmacological study of dextrorotatory and levorotatory pheneturide. Arch. Int. Pharmacodyn.1959, 122, 15.Suche in Google Scholar

[20] O. Weller, J. Schulze, W. A. König, Separation of racemic pharmaceuticals by high-performance liquid chromatography on silica gel modified with carbohydrate residues. J. Chromatogr.1987, 403, 263.10.1016/S0021-9673(00)96360-XSuche in Google Scholar

[21] N. Wad, Separation of the enantiomers of pheneturide in serum by high-performance liquid chromatography. J. Liq. Chromatogr.1988, 11, 1107.10.1080/01483918808068367Suche in Google Scholar

[22] A. V. Krivoshein, S. V. Lindeman, T. V. Timofeeva, V. N. Khrustalev, Racemic and enantiopure forms of 3-ethyl-3- phenylpyrrolidin-2-one adopt very different crystal structures. Chirality2017, 29, 623.10.1002/chir.22735Suche in Google Scholar PubMed

[23] H. D. Flack, Absolute-structure determination: past, present and future. Chimia2014, 68, 26.10.2533/chimia.2014.26Suche in Google Scholar PubMed

[24] D. J. Watkin, R. I. Cooper, Why direct and post-refinement determinations of absolute structure may give different results. Acta Crystallogr.2016, B72, 661.10.1107/S2052520616012890Suche in Google Scholar PubMed

[25] H. D. Flack, G. Bernardinelli, The use of X-ray crystallography to determine absolute configuration. Chirality2008, 20, 681.10.1002/chir.20473Suche in Google Scholar PubMed

[26] M. C. Etter, J. C. MacDonald, J. Bernstein, Graph-set analysis of hydrogen-bond patterns in organic crystals. Acta Crystallogr.1990, B46, 256.10.1107/S0108768189012929Suche in Google Scholar

[27] J. Bernstein, R. E. Davis, L. Shimoni, N.-L. Chang, Patterns in hydrogen bonding: functionality and graph set analysis in crystals. Angew. Chem. Int. Ed.1995, 34, 1555.10.1002/anie.199515551Suche in Google Scholar

[28] D. Hashizume, N. Miki, T. Yamazaki, Y. Aoyagi, T. Arisato, H. Uchiyama, T. Endo, M. Yasui, F. Iwasaki, Mechanism of the first-order phase transition of an acylurea derivative: observation of intermediate stages of transformation with a detailed temperature-resolved single-crystal diffraction method. Acta Crystallogr.2003, B59, 404.10.1107/S0108768103005792Suche in Google Scholar PubMed

[29] G. S. Nichol, W. Clegg, 1-(2-Cyclohex-2-enylpropionyl)-3-methylurea, 2-ethyl-5-methylhexanamide and 2-ethylpentanamide: three products of barbiturate decomposition. Acta Crystallogr.2011, C67, o13.10.1107/S0108270110049322Suche in Google Scholar PubMed

[30] E. Boldyreva, Crystalline amino acids. in Models, Mysteries, and Magic of Molecules (Eds. J. C. A. Boeyens and J. F. Ogilvie) Springer, Dordrecht, p. 167, 2008.10.1007/978-1-4020-5941-4_7Suche in Google Scholar

[31] A. V. Krivoshein, C. Ordonez, V. N. Khrustalev, T. V. Timofeeva, Distinct molecular structures and hydrogen bond patterns of α,α-diethyl-substituted cyclic imide, lactam, and acetamide derivatives in the crystalline phase. J. Mol. Struct.2016, 1121, 196.10.1016/j.molstruc.2016.05.031Suche in Google Scholar

[32] T. Uno, K. Machida, K. Hanai, Y. Saito, Infrared spectra of acylureas and NN′-deuterated acylureas. Bull. Chem. Soc. Jpn.1969, 42, 619.10.1246/bcsj.42.619Suche in Google Scholar

[33] S. H. Yalkowsky, Solubility and partitioning V: dependence of solubility on melting point. J. Pharm. Sci.1981, 70, 971.10.1002/jps.2600700845Suche in Google Scholar PubMed

[34] J. T. Rubino, Solubilities and solid state properties of the sodium salts of drugs. J. Pharm. Sci.1989, 78, 485.10.1002/jps.2600780614Suche in Google Scholar PubMed

[35] K. T. Chu, S. H. Yalkowsky, Predicting aqueous solubility: the role of crystallininty. Curr. Drug Metab.2009, 10, 1184.10.2174/138920009790820110Suche in Google Scholar PubMed

[36] O. Wallach, Zur Kenntniss der Terpene und der ätherischen Oele. Liebigs Ann. Chem.1895, 286, 90.10.1002/jlac.18872380104Suche in Google Scholar

[37] J. Jacques, A. Collet, S. H. Wilen, Enantiomers, Racemates, and Resolutions. Krieger, Malabar, p. 447, 1991.Suche in Google Scholar

[38] C. P. Brock, W. B. Schweizer, J. D. Dunitz, On the validity of Wallach’s rule: on the density and stability of racemic crystals compared with their chiral counterparts. J. Am. Chem. Soc.1991, 113, 9811.10.1021/ja00026a015Suche in Google Scholar


Supplementary Material

The online version of this article offers supplementary material (https://doi.org/10.1515/zkri-2018-2051).



Article note:

Some of the results described in this article were presented in preliminary form as an invited talk (Timofeeva, T. V., Krivoshein, A. V., Sandhu, B. K., Huang, J., and Chen, Y., “Structural and pharmacological studies of anticonvulsant carboxamides and acetylureas”) at the American Crystallographic Association Annual Meeting, Albuquerque, New Mexico, May 24–28, 2014.


Received: 2018-01-14
Accepted: 2018-04-08
Published Online: 2018-04-23
Published in Print: 2018-10-25

©2018 Walter de Gruyter GmbH, Berlin/Boston

Heruntergeladen am 20.12.2025 von https://www.degruyterbrill.com/document/doi/10.1515/zkri-2018-2051/html
Button zum nach oben scrollen