Home Physical Sciences Crystal structure of 1-benzyl-6-hydroxy-1,4,5,6-tetrahydropyridine-3-carbonitrile, C13H14N2O
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Crystal structure of 1-benzyl-6-hydroxy-1,4,5,6-tetrahydropyridine-3-carbonitrile, C13H14N2O

  • Qi-Di Zhong , Hao Zhu , Shao-Fei Bai and Hong Yan EMAIL logo
Published/Copyright: August 22, 2016

Abstract

C13H14N2O, monoclinic, P21/c (no. 14), a = 9.933(2) Å, b = 22.120(6) Å, c = 10.487(3) Å, β = 90.160(7)°, V = 2304.2(10) Å3, Z = 8, Rgt(F) = 0.0452, wRref(F2) = 0.0808, T = 293 K.

CCDC no.:: 1497344

The asymmetric unit of the title crystal structure is shown in the figure. Tables 1 and 2 contain details of the measurement method and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colourless prism Size 0.22 × 0.16 × 0.14 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.8 cm−1
Diffractometer, scan mode:Bruker APEX-II, φ and ω
2θmax, completeness:55.2°, >99%
N(hkl)measured, N(hkl)unique, Rint:10566, 5314, 0.045
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 4278
N(param)refined:292
Programs:SHELX [7], Platon [8], Bruker programs [9]
Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
O10.02948(10)0.10207(4)0.11240(15)0.0423(4)
H10.02510.13230.06740.063*
N10.25880(12)0.08562(5)0.06535(16)0.0335(4)
N20.47598(15)0.27269(6)−0.0328(2)0.0600(6)
C10.16171(15)0.09687(6)0.1644(2)0.0341(4)
H1A0.16170.06130.22010.041*
C20.20403(16)0.15062(6)0.2461(2)0.0363(4)
H2A0.28390.14000.29460.044*
H2B0.13280.16000.30610.044*
C30.23351(16)0.20657(6)0.1644(2)0.0359(4)
H3A0.15040.22220.12840.043*
H3B0.27380.23800.21670.043*
C40.32733(14)0.18915(6)0.06064(19)0.0325(4)
C60.41190(16)0.23385(6)0.0064(2)0.0435(5)
C70.26475(15)0.02442(6)0.0132(2)0.0369(5)
H7A0.31860.0248−0.06380.044*
H7B0.17450.0116−0.01000.044*
C80.32431(14)−0.02088(6)0.10621(18)0.0289(4)
C90.27866(16)−0.08053(6)0.1045(2)0.0367(5)
H90.2098−0.09200.04930.044*
C100.33686(18)−0.12276(6)0.1861(2)0.0424(5)
H100.3066−0.16250.18410.051*
C110.43769(17)−0.10720(7)0.2693(2)0.0409(5)
H110.4766−0.13620.32200.049*
C120.48094(16)−0.04761(7)0.2739(2)0.0424(5)
H120.5477−0.03620.33140.051*
C130.42422(15)−0.00517(6)0.1925(2)0.0383(5)
H130.45390.03470.19590.046*
O20.54885(10)0.11088(4)0.36762(14)0.0396(3)
H20.54310.14570.39420.059*
N30.78378(13)0.10053(5)0.40665(17)0.0344(4)
N40.96678(15)0.29821(6)0.44811(19)0.0493(5)
C140.67625(15)0.10210(6)0.31167(19)0.0324(4)
H140.67430.06220.27130.039*
C150.70930(15)0.14720(6)0.20766(19)0.0318(4)
H15A0.63470.14930.14790.038*
H15B0.78810.13350.16150.038*
C160.73652(15)0.21051(6)0.26224(19)0.0334(4)
H16A0.77480.23620.19680.040*
H16B0.65280.22860.29060.040*
C170.83274(14)0.20523(6)0.37244(19)0.0318(4)
C180.85038(14)0.15228(6)0.43636(19)0.0322(4)
H180.91120.15150.50390.039*
C190.90812(15)0.25621(7)0.4151(2)0.0378(5)
C200.79362(17)0.04784(6)0.4903(2)0.0388(5)
H20A0.70920.04300.53550.047*
H20B0.86350.05500.55330.047*
C210.82497(14)−0.01034(6)0.41974(19)0.0300(4)
C220.77542(15)−0.06441(6)0.4689(2)0.0349(4)
H220.7239−0.06410.54280.042*
C230.80265(18)−0.11878(6)0.4079(2)0.0415(5)
H230.7692−0.15470.44100.050*
C240.87789(17)−0.11962(7)0.2999(2)0.0395(5)
H240.8955−0.15610.25930.047*
C250.92858(16)−0.06626(7)0.2501(2)0.0408(5)
H250.9804−0.06670.17640.049*
C260.90077(15)−0.01157(6)0.3123(2)0.0347(5)
H260.93470.02440.27940.042*
C50.33446(14)0.13107(6)0.0181(2)0.0341(4)
H50.39470.1222−0.04700.041*

Source of material

The title compound was synthesized by 1-benzyl-3-cyano-1,4-dihydropyridine under irradiation of UV-light in methanol solution. After approximately 24 h, followed by thin-layer chromatography, the residue was purified by flash chromatography using ethyl acetate-petroleum ether (1:10 v/v). After concentration in vacuo, colorless solids were collected and dried, and recrystallized from THF. After 3 days colorless crystals suitable for X-ray diffraction were obtained.

Experimental details

All H atoms were placed in idealized positions (C—H = 0.93–0.98 Å, O—H = 0.82 Å) and refined as riding atoms. The Uiso values were constrained to be 1.5Ueq of the carrier atom for oxygen H atoms and 1.2Ueq for the remaining H atoms. Pseudo-merohedral twinning in the crystal was identified [TwinRotMat [8]; twin law −1 0 0, 0 −1 0, 0 0 1] giving a final twin ratio of 0.500(1)/0.500(1).

Discussion

Tetrahydropyridines are a class of interesting compounds because they play important roles in synthetic, therapeutic, and bioorganic chemistry [1], [2], [3], [4], [5], [6]. In order to search for new tetrahydropyridines, the title compound was synthesized and its crystal structure determined.

The asymmetric unit of the title compound consists of two independent and conformationally similar molecules. All bond lengths and angles are in the expected ranges. The tetrahydro-pyridine ring adopts a half-chair conformation. In the crystal, O—H⋯N hydrogen bonds generate chains along the a-axis direction.

Award Identifier / Grant number: KZ201510005007

Funding statement: This work was financially supported by the Key Projects in the Beijing Municipal Natural Science Foundation (No. KZ201510005007).

Acknowledgements:

This work was financially supported by the Key Projects in the Beijing Municipal Natural Science Foundation (No. KZ201510005007).

References

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Received: 2016-4-15
Accepted: 2016-8-2
Published Online: 2016-8-22
Published in Print: 2016-12-1

©2016 Qi-Di Zhong et al., published by De Gruyter.

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

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  70. Crystal structure of catena-poly-[(1-cyclopropyl-6-fluoro-4-oxo-7-(piperazin-1-ium-1-yl)-1,4-dihydroquinoline-3-carboxylate-κ2O,O′)-(μ2-4,4′-sulfonyldibenzoato-κ4O,O′:O′′,O′′′)zinc(II)] hemihydrate, C31H27ZnFN3O9.5S
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  72. Crystal structure of 2-(2-bromophenyl)-5-ethyl-1,3-dioxane-5-carboxylic acid, C13H15BrO4
  73. Crystal structure of 4-(4-((3-bromophenyl)amino)-6-(tert-butyl)-3-(2-hydroxypropan-2-yl)cinnolin-8-yl)-2-methylbut-3-yn-2-ol, C26H30BrN3O2
  74. Crystal structure poly-(μ2-1-(4-(1H-imidazol-1-yl)benzyl)-1H-1,2,4-triazolyl-κ2NN1:N2N)-(μ3-2,2′-(1,2-phenylene)diacetato-κ5-O1,O2:O2:O3,O4)cadmium(II), C22H19CdN5O4
  75. Crystal structure of bis(1-ethyl-6-fluoro-4-oxido-7-(piperazin-1-ium-1-yl)-1,8-naphthyridin-1-ium-3-carboxylate-κ2O,O′)copper(II) benzene-1, 4-dicarboxylate dihydrate, C38H42F2CuN8O12
  76. Redetermination of the crystal structure of potassium lithium molybdate monohydrate, KLiMoO4·H2O
  77. Crystal structure of [tris(2-benzimidazolylmethyl)amine-κ3N](isonicotinate-κO) cobalt(II) [tris(2-benzimidazolylmethyl)amine-κ3N](isonicotinic acid-κO) cobalt(II) triperchlorate, C60H51N16O16Cl3Co2
  78. The crystal structure of tris(μ2-1,3-bis(4,4,4-trifluoro-3-oxido-1-(oxo)but-2-en-1-yl)phenyl-κ4O,O′:O′′,O′′′)-bis(1,2-dimethoxyethane-κ2O,O′)dicerium(III), C50H38F18O16Ce2
  79. Crystal structure of 8-isopropyl-8-aza-bicyclo[3.2.1]octan-3-ol, C10H19NO
  80. Crystal structure of 2,4-dibenzoyl-N,N-dimethylbenzenamine, C22H19NO2
  81. The crystal structure of 2-(4-methoxyphenyl)-6,8-diphenyl-4-(phenylamino)quinazoline — acetonitrile (1/1), C35H28N4O
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