Home Physical Sciences Crystal structure of ethyl 5-amino-3-(methylthio)-1-(1-phenyl-5-(thiophen-2-yl)-1H-pyrazole-3-carbonyl)-1H-pyrazole-4-carboxylate, C21H19N5O3S2
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Crystal structure of ethyl 5-amino-3-(methylthio)-1-(1-phenyl-5-(thiophen-2-yl)-1H-pyrazole-3-carbonyl)-1H-pyrazole-4-carboxylate, C21H19N5O3S2

  • Gamal A. El-Hiti EMAIL logo , Bakr F. Abdel-Wahab , Mohammed Baashen and Hazem A. Ghabbour
Published/Copyright: June 1, 2016

Abstract

C21H19N5O3S2, monoclinic, P21/c (No. 14), a = 24.7576(12) Å, b = 5.0596(2) Å, c = 16.9165(8) Å, β = 101.630(2)°, V = 2075.52(16) Å3, Z = 4, Rgt(F) = 0.0427, wRref(F2) = 0.1040, T = 100 K.

CCDC no.:: 1443918

The crystal structure is shown in the figure. Tables 1 and 2 contain details of the measurement method and a list of the atoms including atomic coordinates and displacement parameters.

Table 1

Data collection and handling.

Crystal:Colourless needle Size 0.86 × 0.23 × 0.05 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:2.9 cm−1
Diffractometer, scan mode:Bruker APEX-II, φ and ω
2θmax, completeness:52.2°, >99%
N(hkl)measured, N(hkl)unique, Rint:29436, 3623, 0.086
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2766
N(param)refined:290
Programs:SHELX [4], Bruker programs [5]
Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
S1−0.79753(3)−0.17076(13)0.42519(4)0.0236(2)
S2−0.61383(3)−1.07683(12)0.52294(4)0.01806(18)
O1−0.75167(7)−0.9039(3)0.77827(10)0.0236(4)
O2−0.58957(7)−1.5987(3)0.75605(10)0.0195(4)
O3−0.55928(7)−1.4877(3)0.64286(9)0.0182(4)
N1−0.84091(8)−0.3677(4)0.63459(11)0.0129(5)
N2−0.81784(8)−0.5509(4)0.68870(11)0.0153(5)
N3−0.69809(8)−0.9648(4)0.68660(11)0.0134(5)
N4−0.68408(8)−0.9041(4)0.61265(11)0.0146(5)
N5−0.67289(10)−1.2746(5)0.79543(13)0.0199(5)
C1−0.83170(11)0.1002(5)0.38090(15)0.0219(6)
H1A−0.82880.16280.33020.026*
C2−0.86322(11)0.2132(5)0.42727(14)0.0175(6)
H2A−0.88460.36280.41220.021*
C3−0.86036(10)0.0789(5)0.50214(14)0.0147(6)
H3A−0.87960.13150.54130.018*
C4−0.82607(10)−0.1364(5)0.50994(14)0.0133(6)
C5−0.81039(10)−0.3250(5)0.57580(14)0.0128(5)
C6−0.76617(10)−0.4932(5)0.59329(14)0.0131(5)
H6A−0.7380−0.51310.56480.016*
C7−0.77235(10)−0.6293(5)0.66346(14)0.0138(6)
C8−0.74090(10)−0.8372(5)0.71411(14)0.0156(6)
C9−0.66742(10)−1.1732(5)0.72440(14)0.0143(6)
C10−0.63237(10)−1.2498(5)0.67460(14)0.0146(5)
C11−0.64483(10)−1.0742(5)0.60677(14)0.0149(6)
C12−0.59292(10)−1.4611(5)0.69548(14)0.0157(6)
C13−0.51516(11)−1.6832(5)0.66408(15)0.0212(6)
H13A−0.5305−1.85980.66330.025*
H13B−0.4937−1.64850.71760.025*
C14−0.47994(12)−1.6592(6)0.60266(18)0.0355(8)
H14A−0.4506−1.78620.61390.053*
H14B−0.4647−1.48430.60460.053*
H14C−0.5018−1.69170.54990.053*
C15−0.64827(11)−0.7991(5)0.46764(15)0.0216(6)
H15A−0.6329−0.76770.42070.032*
H15B−0.6433−0.64500.50140.032*
H15C−0.6869−0.83680.45140.032*
C16−0.89186(10)−0.2494(5)0.64389(14)0.0136(6)
C17−0.89276(11)−0.0911(5)0.70933(15)0.0210(6)
H17A−0.8608−0.06400.74810.025*
C18−0.94180(11)0.0283(5)0.71700(16)0.0268(7)
H18A−0.94270.13640.76120.032*
C19−0.98946(11)−0.0117(5)0.65957(16)0.0233(6)
H19A−1.02220.06950.66490.028*
C20−0.98796(11)−0.1728(5)0.59430(16)0.0247(7)
H20A−1.0198−0.20060.55550.030*
C21−0.93902(11)−0.2936(5)0.58631(16)0.0224(6)
H21A−0.9380−0.40330.54250.027*
H2N5−0.6961(12)−1.207(5)0.8206(16)0.026(8)*
H1N5−0.6525(13)−1.403(6)0.8072(18)0.035(10)*

Source of material

Reaction of 1-phenyl-5-(thiophen-2-yl)-1H-pyrazole-3-carbohydrazide and ethyl 2-cyano-3,3-bis(methylthio)acrylate in anhydrous ethanol under reflux for 4 h gave the crude product which was recrystallized from dimethylformamide to give colorless crystals (Mp: 194–195°C) of the title compound.

Experimental details

Carbon-bound H atoms were placed in calculated positions and were included in the refinement in the riding model approximation, with Uiso(H) set to 1.2Ueq(C). The H atoms of the methyl group were allowed to rotate with a fixed angle around the C—C bond to best fit the experimental electron density (HFIX 137 in the SHELX program suite [4]), with Uiso(H) set to 1.5Ueq(O).

Discussion

Bis-pyrazoles have received great attention since they show various interesting applications [1], [2], [3]. Cell refinement and data reduction were carried out by Bruker SAINT [5]. The asymmetric unit contains only one independent molecule. The phenyl ring (C16—C21) is seriously deviated from the whole molecule plane and makes a dihedral angle of 47.46 (2)° with pyrazol ring (N1—N2—C5—C7). The packing structure shows at least two possible non-classical hydrogen bonds between C1—H1A⋯O1i and C1—H1A⋯N2i with symmetry code: (i) x, −y−1/2, z−1/2.

Acknowledgements:

The authors extend their appreciation to the College of Applied Medical Sciences Research Centre and the Deanship of Scientific Research at King Saud University for their funding of this research.

References

1. Abdel-Wahab, B. F.; El-Ahl, A.-A. S.: Synthesis and characterization of some new heterocycles incorporating the 1-phenyl-5-(2-thienyl)pyrazole moiety. Phosphorus, Sulfur Silicon Relat. Elem. 185 (2010) 249–260.10.1080/10426500902758956Search in Google Scholar

2. Abdel-Aziz, S. A.-G.; Ali, T. E.; El-Mahdy, K. M.; Abdel-Karim, S. M.: Synthesis and antimicrobial activities of some novel bis-pyrazole derivatives containing a hydrophosphoryl unit. Eur. J. Chem. 2 (2011) 25–35.10.5155/eurjchem.2.1.25-35.208Search in Google Scholar

3. Yavari, S.; Nasiri-Gheidari, S.; Taherpour, A.; Yavari, I.: Synthesis of alkyl bis(dimethylamino)methylenecarbamodithioates from 1,1,3,3-tetramethylguanidine, CS2 and oxiranes. Chinese Chem. Lett. 23 (2012) 699–702.10.1016/j.cclet.2012.04.016Search in Google Scholar

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Received: 2016-2-5
Accepted: 2016-5-18
Published Online: 2016-6-1
Published in Print: 2016-12-1

©2016 Gamal A. El-Hiti et al., published by De Gruyter.

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

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  71. Crystal structure of 2-(2-bromophenyl)-5-methyl-1,3-dioxane-5-carboxylic acid, C12H13BrO4
  72. Crystal structure of 2-(2-bromophenyl)-5-ethyl-1,3-dioxane-5-carboxylic acid, C13H15BrO4
  73. Crystal structure of 4-(4-((3-bromophenyl)amino)-6-(tert-butyl)-3-(2-hydroxypropan-2-yl)cinnolin-8-yl)-2-methylbut-3-yn-2-ol, C26H30BrN3O2
  74. Crystal structure poly-(μ2-1-(4-(1H-imidazol-1-yl)benzyl)-1H-1,2,4-triazolyl-κ2NN1:N2N)-(μ3-2,2′-(1,2-phenylene)diacetato-κ5-O1,O2:O2:O3,O4)cadmium(II), C22H19CdN5O4
  75. Crystal structure of bis(1-ethyl-6-fluoro-4-oxido-7-(piperazin-1-ium-1-yl)-1,8-naphthyridin-1-ium-3-carboxylate-κ2O,O′)copper(II) benzene-1, 4-dicarboxylate dihydrate, C38H42F2CuN8O12
  76. Redetermination of the crystal structure of potassium lithium molybdate monohydrate, KLiMoO4·H2O
  77. Crystal structure of [tris(2-benzimidazolylmethyl)amine-κ3N](isonicotinate-κO) cobalt(II) [tris(2-benzimidazolylmethyl)amine-κ3N](isonicotinic acid-κO) cobalt(II) triperchlorate, C60H51N16O16Cl3Co2
  78. The crystal structure of tris(μ2-1,3-bis(4,4,4-trifluoro-3-oxido-1-(oxo)but-2-en-1-yl)phenyl-κ4O,O′:O′′,O′′′)-bis(1,2-dimethoxyethane-κ2O,O′)dicerium(III), C50H38F18O16Ce2
  79. Crystal structure of 8-isopropyl-8-aza-bicyclo[3.2.1]octan-3-ol, C10H19NO
  80. Crystal structure of 2,4-dibenzoyl-N,N-dimethylbenzenamine, C22H19NO2
  81. The crystal structure of 2-(4-methoxyphenyl)-6,8-diphenyl-4-(phenylamino)quinazoline — acetonitrile (1/1), C35H28N4O
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