Home The utility of reverse phenotyping: a case of lysinuric protein intolerance presented with childhood osteoporosis
Article
Licensed
Unlicensed Requires Authentication

The utility of reverse phenotyping: a case of lysinuric protein intolerance presented with childhood osteoporosis

  • Enise Avci Durmusalioglu ORCID logo EMAIL logo , Esra Isik , Durdugul Ayyildiz Emecen , Damla Goksen , Samim Ozen , Huseyin Onay , Melis Kose , Tahir Atik , Sukran Darcan , Ozgur Cogulu and Ferda Ozkinay
Published/Copyright: April 7, 2021

Abstract

Objectives

Childhood osteoporosis is often a consequence of a chronic disease or its treatment. Lysinuric protein intolerance (LPI), a rare secondary cause of the osteoporosis, is an autosomal recessive disorder with clinical features ranging from minimal protein intolerance to severe multisystemic involvement. We report a case diagnosed to have LPI using a Next Generation Sequencing (NGS) panel and evaluate the utility of reverse phenotyping.

Case presentation

A fifteen-year-old-boy with an initial diagnosis of osteogenesis imperfecta, was referred due to a number of atypical findings accompanying to osteoporosis such as splenomegaly and bicytopenia. A NGS panel (TruSight One Sequencing Panel) was performed and a novel homozygous mutation of c.257G>A (p.Gly86Glu) in the SLC7A7 gene (NM_001126106.2), responsible for LPI, was detected. The diagnosis was confirmed via reverse phenotyping.

Conclusions

Reverse phenotyping using a multigene panel shortens the diagnostic process.


Corresponding author: Enise Avci Durmusalioglu, MD, Pediatric Genetics Subdivision, Department of Pediatrics, Faculty of Medicine, Ege University, Bornova, Izmir, Turkey, Phone: +902323901442, Fax: +902323903971, E-mail: .

  1. Research funding: None declared.

  2. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  3. Competing interests: The funding organization(s) played no role in the study design; in the collection, analysis and interpretation of data; in the writing of the report; or in the decision to submit the report for publication.

  4. Ethical approval: A written informed consent was obtained from the parents for publication of the case.

References

1. Marrani, E, Giani, T, Simonini, G, Cimaz, R. Pediatric osteoporosis: diagnosis and treatment considerations. Drugs 2017;77:679–95. Epub 2017/03/09. https://doi.org/10.1007/s40265-017-0715-3.Search in Google Scholar PubMed

2. Torrents, D, Mykkänen, J, Pineda, M, Feliubadaló, L, Estévez, R, de Cid, R, et al.. Identification of SLC7A7, encoding y + LAT-1, as the lysinuric protein intolerance gene. Nat Genet 1999;21:293–6. https://doi.org/10.1038/6809.Search in Google Scholar PubMed

3. Sebastio, G, Sperandeo, MP, Andria, G. Lysinuric protein intolerance: reviewing concepts on a multisystem disease. Am J Med Genet C Semin Med Genet 2011;157:54–62. https://doi.org/10.1002/ajmg.c.30287.Search in Google Scholar PubMed

4. Lindahl, K, Astrom, E, Rubin, CJ, Grigelioniene, G, Malmgren, B, Ljunggren, O, et al.. Genetic epidemiology, prevalence, and genotype-phenotype correlations in the Swedish population with osteogenesis imperfecta. Eur J Hum Genet 2015;23:1112. https://doi.org/10.1038/ejhg.2015.129.Search in Google Scholar PubMed PubMed Central

5. Mauhin, W, Habarou, F, Gobin, S, Servais, A, Brassier, A, Grisel, C, et al.. Update on lysinuric protein intolerance, a multi-faceted disease retrospective cohort analysis from birth to adulthood. Orphanet J Rare Dis 2017;5:3. https://doi.org/10.1186/s13023-016-0550-8.Search in Google Scholar PubMed PubMed Central

6. Ogier de Baulny, H, Schiff, M, Dionisi-Vici, C. Lysinuric protein intolerance (LPI): a multi organ disease by far more complex than a classic urea cycle disorder. Mol Genet Metabol 2012;106:12–7. https://doi.org/10.1016/j.ymgme.2012.02.010.Search in Google Scholar PubMed

7. Carpenter, TO, Levy, HE, Holtrop, ME, Shih, VE, Anast, CE. Lysinuric protein intolerance presenting as childhood osteoporosis. Clinical and skeletal response to citrulline therapy. N Engl J Med 1985;312:290–4. https://doi.org/10.1056/nejm198501313120506.Search in Google Scholar

8. Posey, JE, Burrage, LC, Miller, MJ, Liu, P, Hardison, MT, Elsea, SH, et al.. Lysinuric protein intolerance presenting with multiple fractures. Mol Genet Metabol Rep 2014;1:176–83. https://doi.org/10.1016/j.ymgmr.2014.03.004.Search in Google Scholar PubMed PubMed Central

9. Guzel-Ozanturk, A, Ozgul, RK, Unal, O, Hismi, B, Aydın, Hİ, Sivri, S, et al.. Molecular and clinical evaluation of Turkish patients with lysinuric protein intolerance. Gene 2013;521:293–5. https://doi.org/10.1016/j.gene.2013.03.033.Search in Google Scholar PubMed

10. Svedstrom, E, Parto, K, Marttinen, M, Virtama, P, Simell, O. Skeletal manifestations of lysinuric protein intolerance. A follow-up study of 29 patients. Skeletal Radiol 1993;22:11–6. https://doi.org/10.1007/BF00191519.Search in Google Scholar PubMed

11. Parto, K, Penttinen, R, Paronen, I, Pelliniemi, L, Simell, O. Osteoporosis in lysinuric protein intolerance. J Inherit Metab Dis 1993;16:441–50. https://doi.org/10.1007/bf00710296.Search in Google Scholar

12. Habib, A, Md Yunus, Z, Azize, NA, Ch’ng, GS, Ong, WP, Chen, BC, et al.. Hyperexcretion of homocitrulline in a Malaysian patient with lysinuric protein intolerance. Eur J Pediatr 2013;172:1277–81. https://doi.org/10.1007/s00431-013-1947-1.Search in Google Scholar PubMed

Received: 2021-01-10
Accepted: 2021-02-18
Published Online: 2021-04-07
Published in Print: 2021-07-27

© 2021 Walter de Gruyter GmbH, Berlin/Boston

Articles in the same Issue

  1. Frontmatter
  2. Review Article
  3. Delivery factors and neonatal thyroid hormone levels: a systematic review
  4. Original Articles
  5. Birth prevalence of tetrahydrobiopterin deficiency in China: data from the national newborn screening program, 2013–2019
  6. Analysis of the CAG tract length in the Androgen Receptor gene in Mexican patients with nonsyndromic cryptorchidism
  7. Pituitary hypoplasia is the best MRI predictor of the severity and type of growth hormone deficiency in children with congenital growth hormone deficiency
  8. Urinary gonadotropin measurements by enhanced luminometric assays (LIA) for the evaluation of pubertal development
  9. Challenges in management of transient hyperinsulinism – a retrospective analysis of 36 severely affected children
  10. Who should return for an oral glucose tolerance test? A proposed clinical pathway based on retrospective analysis of 332 children
  11. Investigation of the prevalence of cardiovascular risk factors in obese patients diagnosed with metabolic syndrome in childhood and examination of left ventricular function by echocardiography
  12. Effect of l-carnitine supplementation on children and adolescents with nonalcoholic fatty liver disease (NAFLD): a randomized, triple-blind, placebo-controlled clinical trial
  13. Management of patients with X-linked hypophosphatemic rickets during Covid-19 pandemic lockdown
  14. Evaluation of the pathophysiological role of Fetuin A levels in adolescents with polycystic ovary syndrome
  15. Gonadotropins for testicular descent in cryptorchid congenital hypogonadotropic hypogonadism males beyond infancy
  16. Clinical characteristics and outcome of hospitalized children and adolescent patients with type 1 diabetes during the COVID-19 pandemic: data from a single center surveillance study in Egypt
  17. Letter to the Editor
  18. Revisiting the effect of GnRH analogue treatment on bone mineral density in young adolescents with gender dysphoria
  19. Case Reports
  20. Pulmonary and cutaneous mucormycosis in two children with diabetes mellitus type 1
  21. Pyruvate carboxylase deficiency type C as a differential diagnosis of diabetic ketoacidosis
  22. Barth syndrome with severe dilated cardiomyopathy and growth hormone resistance: a case report
  23. The utility of reverse phenotyping: a case of lysinuric protein intolerance presented with childhood osteoporosis
Downloaded on 8.9.2025 from https://www.degruyterbrill.com/document/doi/10.1515/jpem-2021-0018/html
Scroll to top button