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Structure of large dsDNA viruses

  • Thomas Klose

    Thomas Klose studied biochemistry at the Martin-Luther-Universität Halle-Wittenberg. He received his PhD in biochemistry from the Martin-Luther-Universität Halle-Wittenberg, where he worked within the framework of the GRK1026 on the assembly of virus-like-particles in the group of Hauke Lilie. He is currently working in the Rossmann group at Purdue University on the structure of large viruses.

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    und Michael G. Rossmann

    Michael G. Rossmann was born in Frankfurt, Germany and studied physics and mathematics at the University of London. He received his PhD in chemical crystallography in 1956 from the University of Glasgow. He worked as a postdoc with William N. Lipscomb, Jr. at the University of Minnesota before returning to the UK and where he worked with Max Perutz on the structure of hemoglobin at the MRC Laboratory at the University of Cambridge. In 1964 he became a faculty member in the Department of Biological Sciences at Purdue University. He was promoted to full professor in 1967 and is the Hanley Distinguished Professor of Biological Sciences since 1978. Additionally, he has adjunct positions at Cornell University as well as Indiana University’s School of Medicine. He is an elected member of the National Academy of Sciences, a Foreign Fellow of the Indian National Science Academy and an Elected Foreign Member of the Royal Society of London. Among other honors he was awarded honorary doctorates by the University of Uppsala in Sweden, the University of Strasbourg in France, the Vrije Universiteit Brussel in Belgium, the University of Glasgow in Scotland, University of York in England and the University of Québec in Canada.

Veröffentlicht/Copyright: 8. Juli 2014

Abstract

Nucleocytoplasmic large dsDNA viruses (NCLDVs) encompass an ever-increasing group of large eukaryotic viruses, infecting a wide variety of organisms. The set of core genes shared by all these viruses includes a major capsid protein with a double jelly-roll fold forming an icosahedral capsid, which surrounds a double layer membrane that contains the viral genome. Furthermore, some of these viruses, such as the members of the Mimiviridae and Phycodnaviridae have a unique vertex that is used during infection to transport DNA into the host.


Corresponding author: Thomas Klose, Department of Biological Sciences, Purdue University, West Lafayette, IN 47907-2032, USA, e-mail:

About the authors

Thomas Klose

Thomas Klose studied biochemistry at the Martin-Luther-Universität Halle-Wittenberg. He received his PhD in biochemistry from the Martin-Luther-Universität Halle-Wittenberg, where he worked within the framework of the GRK1026 on the assembly of virus-like-particles in the group of Hauke Lilie. He is currently working in the Rossmann group at Purdue University on the structure of large viruses.

Michael G. Rossmann

Michael G. Rossmann was born in Frankfurt, Germany and studied physics and mathematics at the University of London. He received his PhD in chemical crystallography in 1956 from the University of Glasgow. He worked as a postdoc with William N. Lipscomb, Jr. at the University of Minnesota before returning to the UK and where he worked with Max Perutz on the structure of hemoglobin at the MRC Laboratory at the University of Cambridge. In 1964 he became a faculty member in the Department of Biological Sciences at Purdue University. He was promoted to full professor in 1967 and is the Hanley Distinguished Professor of Biological Sciences since 1978. Additionally, he has adjunct positions at Cornell University as well as Indiana University’s School of Medicine. He is an elected member of the National Academy of Sciences, a Foreign Fellow of the Indian National Science Academy and an Elected Foreign Member of the Royal Society of London. Among other honors he was awarded honorary doctorates by the University of Uppsala in Sweden, the University of Strasbourg in France, the Vrije Universiteit Brussel in Belgium, the University of Glasgow in Scotland, University of York in England and the University of Québec in Canada.

Acknowledgments

The authors are grateful for financial support from the National Institutes of Health (AI011219 to M.G.R.).

References

Abad-Zapatero, C., Abdel-Meguid, S.S., Johnson, J.E., Leslie, A.G., Rayment, I., Rossmann, M.G., Suck, D., and Tsukihara, T. (1980). Structure of southern bean mosaic virus at 2.8 Å resolution. Nature 286, 33–39.10.1038/286033a0Suche in Google Scholar PubMed

Aherfi, S., Pagnier, I., Fournous, G., Raoult, D., La Scola, B., and Colson, P. (2013). Complete genome sequence of Cannes 8 virus, a new member of the proposed family “Marseilleviridae.” Virus Genes 47, 550–555.10.1007/s11262-013-0965-4Suche in Google Scholar PubMed

Bahar, M.W., Graham, S.C., Stuart, D.I., and Grimes, J.M. (2011). Insights into the evolution of a complex virus from the crystal structure of vaccinia virus d13. Structure 19, 1011–1020.10.1016/j.str.2011.03.023Suche in Google Scholar PubMed PubMed Central

Baker, M.L., Jiang, W., Rixon, F.J., and Chiu, W. (2005). Common ancestry of herpesviruses and tailed DNA bacteriophages. J. Virol. 79, 14967–14970.10.1128/JVI.79.23.14967-14970.2005Suche in Google Scholar PubMed PubMed Central

Boyer, M., Yutin, N., Pagnier, I., Barrassi, L., Fournous, G., Espinosa, L., Robert, C., Azza, S., Sun, S., Rossmann, M.G., et al. (2009). Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms. Proc. Natl. Acad. Sci. USA 106, 21848–21853.10.1073/pnas.0911354106Suche in Google Scholar PubMed PubMed Central

Boyer, M., Azza, S., Barrassi, L., Klose, T., Campocasso, A., Pagnier, I., Fournous, G., Borg, A., Robert, C., Zhang, X., et al. (2011). Mimivirus shows dramatic genome reduction after intraamoebal culture. Proc. Natl. Acad. Sci. USA 108, 10296–10301.10.1073/pnas.1101118108Suche in Google Scholar PubMed PubMed Central

Caspar, D. and Klug, A. (1961). Physical principles in the construction of regular viruses. Cold Spring Harb. Symp. Quant. Biol. 27, 1–24.10.1101/SQB.1962.027.001.005Suche in Google Scholar PubMed

Cherrier, M.V., Kostyuchenko, V.A., Xiao, C., Bowman, V.D., Battisti, A.J., Yan, X., Chipman, P.R., Baker, T.S., van Etten, J.L., and Rossmann, M.G. (2009). An icosahedral algal virus has a complex unique vertex decorated by a spike. Proc. Natl. Acad. Sci. USA 106, 11085–11089.10.1073/pnas.0904716106Suche in Google Scholar PubMed PubMed Central

Claverie, J.-M. and Abergel, C. (2009). Mimivirus and its virophage. Annu. Rev. Genet. 43, 49–66.10.1146/annurev-genet-102108-134255Suche in Google Scholar PubMed

Claverie, J.-M. and Abergel, C. (2010). Mimivirus: the emerging paradox of quasi-autonomous viruses. Trends Genet. 26, 431–437.10.1016/j.tig.2010.07.003Suche in Google Scholar PubMed

Clouthier, S.C., Vanwalleghem, E., Copeland, S., Klassen, C., Hobbs, G., Nielsen, O., and Anderson, E.D. (2013). A new species of nucleo-cytoplasmic large DNA virus (NCLDV) associated with mortalities in Manitoba lake sturgeon Acipenser fulvescens. Dis. Aquat. Org. 102, 195–209.10.3354/dao02548Suche in Google Scholar PubMed

Colson, P., De Lamballerie, X., Yutin, N., Asgari, S., Bigot, Y., Bideshi, D.K., Cheng, X.-W., Federici, B.A., Van Etten, J.L., Koonin, E.V., et al. (2013a). “Megavirales,” a proposed new order for eukaryotic nucleocytoplasmic large DNA viruses. Arch. Virol. 158, 2517–2521.10.1007/s00705-013-1768-6Suche in Google Scholar PubMed PubMed Central

Colson, P., Pagnier, I., Yoosuf, N., Fournous, G., La Scola, B., and Raoult, D. (2013b). “Marseilleviridae,” a new family of giant viruses infecting amoebae. Arch. Virol. 158, 915–920.10.1007/s00705-012-1537-ySuche in Google Scholar PubMed

Crick, F.H. and Watson, J.D. (1956). Structure of small viruses. Nature 177, 473–475.10.1038/177473a0Suche in Google Scholar PubMed

Desnues, C. and Raoult, D. (2012). Virophages question the existence of satellites. Nat. Rev. Microbiol. 10, 234.10.1038/nrmicro2676-c3Suche in Google Scholar PubMed

Epifano, C., Krijnse-Locker, J., Salas, M.L., Salas, J., and Rodríguez, J.M. (2006). Generation of filamentous instead of icosahedral particles by repression of African swine fever virus structural protein pB438L. J. Virol. 80, 11456–11466.10.1128/JVI.01468-06Suche in Google Scholar PubMed PubMed Central

Filée, J., Pouget, N., and Chandler, M. (2008). Phylogenetic evidence for extensive lateral acquisition of cellular genes by nucleocytoplasmic large DNA viruses. BMC Evol. Biol. 8, 320.10.1186/1471-2148-8-320Suche in Google Scholar PubMed PubMed Central

Fischer, M.G., Allen, M.J., Wilson, W.H., and Suttle, C.A. (2010). Giant virus with a remarkable complement of genes infects marine zooplankton. Proc. Natl. Acad. Sci. USA 107, 19508–19513.10.1073/pnas.1007615107Suche in Google Scholar PubMed PubMed Central

Ghedin, E. and Claverie, J.-M. (2005). Mimivirus relatives in the Sargasso sea. Virol. J. 2, 62.10.1186/1743-422X-2-62Suche in Google Scholar PubMed PubMed Central

Harrison, S.C., Olson, A.J., Schutt, C.E., Winkler, F.K., and Bricogne, G. (1978). Tomato bushy stunt virus at 2.9 Å resolution. Nature 276, 368–373.10.1038/276368a0Suche in Google Scholar PubMed

Helgstrand, C., Wikoff, W.R., Duda, R.L., Hendrix, R.W., Johnson, J.E., and Liljas, L. (2003). The refined structure of a protein catenane: the HK97 bacteriophage capsid at 3.44 Å resolution. J Mol Biol 334, 885–899.10.1016/j.jmb.2003.09.035Suche in Google Scholar PubMed

Hogle, J.M., Chow, M., and Filman, D.J. (1985). Three-dimensional structure of poliovirus at 2.9 Å resolution. Science 229, 1358–1365.10.1126/science.2994218Suche in Google Scholar PubMed

Hyun, J.-K., Accurso, C., Hijnen, M., Schult, P., Pettikiriarachchi, A., Mitra, A.K., and Coulibaly, F. (2011). Membrane remodeling by the double-barrel scaffolding protein of poxvirus. PLoS Pathog. 7, e1002239.10.1371/journal.ppat.1002239Suche in Google Scholar PubMed PubMed Central

Iyer, L.M., Aravind, L., and Koonin, E.V. (2001). Common origin of four diverse families of large eukaryotic DNA viruses. J. Virol. 75, 11720–11734.10.1128/JVI.75.23.11720-11734.2001Suche in Google Scholar PubMed PubMed Central

Krupovic, M. and Cvirkaite-Krupovic, V. (2011). Virophages or satellite viruses? Nat. Rev. Microbiol. 9, 762–763.Suche in Google Scholar

Kuznetsov, Y.G. and McPherson, A. (2011). Nano-fibers produced by viral infection of amoeba visualized by atomic force microscopy. Biopolymers 95, 234–239.10.1002/bip.21563Suche in Google Scholar PubMed

Kuznetsov, Y.G., Gurnon, J.R., van Etten, J.L., and McPherson, A. (2005). Atomic force microscopy investigation of a chlorella virus, PBCV-1. J Struct Biol 149, 256–263.10.1016/j.jsb.2004.10.007Suche in Google Scholar PubMed

Kuznetsov, Y.G., Xiao, C., Sun, S., Raoult, D., Rossmann, M., and McPherson, A. (2010). Atomic force microscopy investigation of the giant mimivirus. Virology 404, 127–137.10.1016/j.virol.2010.05.007Suche in Google Scholar PubMed

Kuznetsov, Y.G., Klose, T., Rossmann, M., and McPherson, A. (2013). Morphogenesis of mimivirus and its viral factories: an atomic force microscopy study of infected cells. J. Virol. 87, 11200–11213.10.1128/JVI.01372-13Suche in Google Scholar PubMed PubMed Central

La Scola, B., Audic, S., Robert, C., Jungang, L., de Lamballerie, X., Drancourt, M., Birtles, R., Claverie, J.-M., and Raoult, D. (2003). A giant virus in amoebae. Science 299, 2033.10.1126/science.1081867Suche in Google Scholar PubMed

La Scola, B., Desnues, C., Pagnier, I., Robert, C., Barrassi, L., Fournous, G., Merchat, M., Suzan-Monti, M., Forterre, P., Koonin, E., et al. (2008). The virophage as a unique parasite of the giant mimivirus. Nature 455, 100–104.10.1038/nature07218Suche in Google Scholar PubMed

Leiman, P.G., Arisaka, F., van Raaij, M.J., Kostyuchenko, V.A., Aksyuk, A.A., Kanamaru, S., and Rossmann, M.G. (2010). Morphogenesis of the T4 tail and tail fibers. Virol. J. 7, 355.10.1186/1743-422X-7-355Suche in Google Scholar PubMed PubMed Central

Moreira, D. and Brochier-Armanet, C. (2008). Giant viruses, giant chimeras: the multiple evolutionary histories of Mimivirus genes. BMC Evol. Biol. 8, 12.10.1186/1471-2148-8-12Suche in Google Scholar PubMed PubMed Central

Mutsafi, Y., Zauberman, N., Sabanay, I., and Minsky, A. (2010). Vaccinia-like cytoplasmic replication of the giant Mimivirus. Proc. Natl. Acad. Sci. USA 107, 5978–5982.10.1073/pnas.0912737107Suche in Google Scholar PubMed PubMed Central

Mutsafi, Y., Shimoni, E., Shimon, A., and Minsky, A. (2013). Membrane Assembly during the Infection Cycle of the Giant Mimivirus. PLoS Pathog. 9, e1003367.10.1371/journal.ppat.1003367Suche in Google Scholar PubMed PubMed Central

Nandhagopal, N., Simpson, A.A., Gurnon, J.R., Yan, X., Baker, T.S., Graves, M.V., van Etten, J.L., and Rossmann, M.G. (2002). The structure and evolution of the major capsid protein of a large, lipid-containing DNA virus. Proc. Natl. Acad. Sci. USA 99, 14758–14763.10.1073/pnas.232580699Suche in Google Scholar PubMed PubMed Central

Onimatsu, H., Sugimoto, I., Fujie, M., Usami, S., and Yamada, T. (2004). Vp130, a chloroviral surface protein that interacts with the host Chlorella cell wall. Virology 319, 71–80.10.1016/j.virol.2003.10.030Suche in Google Scholar PubMed

Onimatsu, H., Suganuma, K., Uenoyama, S., and Yamada, T. (2006). C-terminal repetitive motifs in Vp130 present at the unique vertex of the Chlorovirus capsid are essential for binding to the host Chlorella cell wall. Virology 353, 433–442.10.1016/j.virol.2006.06.010Suche in Google Scholar PubMed

Pagnier, I., Reteno, D.-G.I., Saadi, H., Boughalmi, M., Gaia, M., Slimani, M., Ngounga, T., Bekliz, M., Colson, P., Raoult, D., et al. (2013). A decade of improvements in mimiviridae and marseilleviridae isolation from amoeba. Intervirology 56, 354–363.10.1159/000354556Suche in Google Scholar PubMed

Pettersen, E.F., Goddard, T.D., Huang, C.C., Couch, G.S., Greenblatt, D.M., Meng, E.C., and Ferrin, T.E. (2004). UCSF chimera – a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605–1612.10.1002/jcc.20084Suche in Google Scholar PubMed

Philippe, N., Legendre, M., Doutre, G., Couté, Y., Poirot, O., Lescot, M., Arslan, D., Seltzer, V., Bertaux, L., Bruley, C., et al. (2013). Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes. Science 341, 281–286.10.1126/science.1239181Suche in Google Scholar PubMed

Raoult, D. (2004). The 1.2-megabase genome sequence of mimivirus. Science 306, 1344–1350.10.1126/science.1101485Suche in Google Scholar PubMed

Raoult, D., La Scola, B., and Birtles, R. (2007). The discovery and characterization of Mimivirus, the largest known virus and putative pneumonia agent. Clin. Infect. Dis. 45, 95–102.10.1086/518608Suche in Google Scholar PubMed

Renesto, P., Abergel, C., Decloquement, P., Moinier, D., Azza, S., Ogata, H., Fourquet, P., Gorvel, J.-P., and Claverie, J.-M. (2006). Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products. J. Virol. 80, 11678–11685.10.1128/JVI.00940-06Suche in Google Scholar PubMed PubMed Central

Rossmann, M.G. and Johnson, J.E. (1989). Icosahedral RNA virus structure. Annu. Rev. Biochem. 58, 533–573.10.1146/annurev.bi.58.070189.002533Suche in Google Scholar PubMed

Rossmann, M.G., Arnold, E., Erickson, J.W., Frankenberger, E.A., Griffith, J.P., Hecht, H.J., Johnson, J.E., Kamer, G., Luo, M., and Mosser, A.G. (1985). Structure of a human common cold virus and functional relationship to other picornaviruses. Nature 317, 145–153.10.1038/317145a0Suche in Google Scholar PubMed

Su, C.J. and Baseman, J.B. (1990). Genome size of Mycoplasma genitalium. J. Bacteriol. 172, 4705–4707.10.1128/jb.172.8.4705-4707.1990Suche in Google Scholar PubMed PubMed Central

Suzan-Monti, M., La Scola, B., Barrassi, L., Espinosa, L., and Raoult, D. (2007). Ultrastructural characterization of the giant volcano-like virus factory of Acanthamoeba polyphaga Mimivirus. PLoS One 2, e328.10.1371/journal.pone.0000328Suche in Google Scholar PubMed PubMed Central

Thiel, G., Moroni, A., Dunigan, D.D., and van Etten, J.L. (2010). Initial events associated with virus PBCV-1 infection of Chlorella NC64A. Prog. Bot. 71, 169–183.10.1007/978-3-642-02167-1_7Suche in Google Scholar PubMed PubMed Central

Thomas, V., Bertelli, C., Collyn, F., Casson, N., Telenti, A., Goesmann, A., Croxatto, A., and Greub, G. (2011). Lausannevirus, a giant amoebal virus encoding histone doublets. Environ. Microbiol. 13, 1454–1466.10.1111/j.1462-2920.2011.02446.xSuche in Google Scholar PubMed

Wikoff, W.R., Liljas, L., Duda, R.L., Tsuruta, H., Hendrix, R.W., and Johnson, J.E. (2000). Topologically linked protein rings in the bacteriophage HK97 capsid. Science 289, 2129–2133.10.1126/science.289.5487.2129Suche in Google Scholar PubMed

Wrigley, N.G. (1969). An electron microscope study of the structure of Sericesthis iridescent virus. J. Gen. Virol. 5, 123–134.10.1099/0022-1317-5-1-123Suche in Google Scholar PubMed

Xiao, C., Chipman, P.R., Battisti, A.J., Bowman, V.D., Renesto, P., Raoult, D., and Rossmann, M.G. (2005). Cryo-electron microscopy of the giant Mimivirus. J. Mol. Biol. 353, 493–496.10.1016/j.jmb.2005.08.060Suche in Google Scholar PubMed

Xiao, C., Kuznetsov, Y.G., Sun, S., Hafenstein, S.L., Kostyuchenko, V.A., Chipman, P.R., Suzan-Monti, M., Raoult, D., McPherson, A., and Rossmann, M.G. (2009). Structural studies of the giant mimivirus. PLoS Biol. 7, e92.10.1371/journal.pbio.1000092Suche in Google Scholar PubMed PubMed Central

Yan, X., Olson, N.H., van Etten, J.L., Bergoin, M., Rossmann, M.G., and Baker, T.S. (2000). Structure and assembly of large lipid-containing dsDNA viruses. Nat. Struct. Biol. 7, 101–103.10.1038/72360Suche in Google Scholar PubMed PubMed Central

Yan, X., Chipman, P.R., Castberg, T., Bratbak, G., and Baker, T.S. (2005). The marine algal virus PpV01 has an icosahedral capsid with T=219 quasisymmetry. J. Virol. 79, 9236–9243.10.1128/JVI.79.14.9236-9243.2005Suche in Google Scholar PubMed PubMed Central

Yan, X., Yu, Z., Zhang, P., Battisti, A.J., Holdaway, H.A., Chipman, P.R., Bajaj, C., Bergoin, M., Rossmann, M.G., and Baker, T.S. (2009). The capsid proteins of a large, icosahedral dsDNA virus. J. Mol. Biol. 385, 1287–1299.10.1016/j.jmb.2008.11.002Suche in Google Scholar PubMed PubMed Central

Zauberman, N., Mutsafi, Y., Halevy, D.B., Shimoni, E., Klein, E., Xiao, C., Sun, S., and Minsky, A. (2008). Distinct DNA exit and packaging portals in the virus Acanthamoeba polyphaga mimivirus. PLoS Biol. 6, e114.10.1371/journal.pbio.0060114Suche in Google Scholar PubMed PubMed Central

Zhang, X., Xiang, Y., Dunigan, D.D., Klose, T., Chipman, P.R., van Etten, J.L., and Rossmann, M.G. (2011). Three-dimensional structure and function of the Paramecium bursaria chlorella virus capsid. Proc. Natl. Acad. Sci. USA 108, 14837–14842.10.1073/pnas.1107847108Suche in Google Scholar PubMed PubMed Central

Received: 2014-2-17
Accepted: 2014-4-23
Published Online: 2014-7-8
Published in Print: 2014-7-1

©2014 by Walter de Gruyter Berlin/Boston

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