Codon optimization of Aspergillus niger feruloyl esterase and its expression in Pichia pastoris

References

Benoit I., Asther M., Sulzenbacher G., Record E., Marmuse L., Parsiegla G., Gimbert I., Asther M. & Bignon C. 2006. Respective importance of protein folding and glycosylation in the thermal stability of recombinant feruloyl esterase A. FEBS Lett. 580: 5815–5821.10.1016/j.febslet.2006.09.039Search in Google Scholar PubMed

Benoit I., Coutard B., Oubelaid R., Asther M. & Bignon C. 2007. Expression in Escherichia coli, refolding and crystallization of Aspergillus niger feruloyl esterase A using a serial factorial approach. Protein Expr. Purif. 55: 166–174.10.1016/j.pep.2007.04.001Search in Google Scholar PubMed

Benson D.A., Clark K., Karsch-Mizrachi I., Lipman D.J., Ostell J. & Sayers E.W. 2015. GenBank. Nucleic Acids Res. 43 (Database issue): D30-D35.10.1093/nar/gku1216Search in Google Scholar PubMed PubMed Central

Chandrasekharaiah M., Thulasi A., Vijayarani K., Kumar D.P., Santosh S.S., Palanivel C., Jose V.L. & Sampath K.T. 2012. Expression and biochemical characterization of two novel feruloyl esterases derived from fecal samples of Rusa unicolor and Equus burchelli. Gene 500: 134–139.10.1016/j.gene.2012.03.027Search in Google Scholar PubMed

Chang S.W., Lee G.C. & Shaw J.F. 2006. Codon optimization of Candadi rugosa lip 1 for improving expression in Pichia patoris and biochemical characterization of the purified recombinant LIP1 lipase. J. Agric. Food Chem. 54: 815–822.10.1021/jf052183kSearch in Google Scholar PubMed

Chen X.L., Cao Y.H., Ding Y.H., Lu W.Q. & Li D.F. 2007. Cloning, functional expression and characterization of Aspergillus sulphureusβ-mannanase in Pichia pastoris. J. Biotechnol. 128: 452–461.10.1016/j.jbiotec.2006.11.003Search in Google Scholar PubMed

Chen X.L., Qiao J.Y., Yu H.F. & Cao Y.H. 2009. Overexpression of an optimized Aspergillus sulphureusβ-mannanase gene in Pichia pastoris. Biologia 64: 235–238.10.2478/s11756-009-0043-5Search in Google Scholar

Debeire P., Khoune P., Jeltsch J.M. & Phalip V. 2012. Product patterns of a feruloyl esterase from Aspergillus nidulans on large feruloyl-arabino-xylo-oligosaccharides from wheat bran. Bioresour. Technol. 119: 425–428.10.1016/j.biortech.2012.01.185Search in Google Scholar PubMed

de Vries R.P., Michelsen B., Poulsen C.H., Kroon P.A., van den Heuvel R.H., Faulds C.B., Williamson G., van den Hombergh J.P. & Visser J. 1997. The faeA genes from Aspergillus niger and Aspergillus tubingensis encode ferulic acid esterases involved in degradation of complex cell wall polysaccharides. Appl. Environ. Microbiol. 63: 4638–4644.10.1128/aem.63.12.4638-4644.1997Search in Google Scholar PubMed PubMed Central

Doi R.H. & Kosug A. 2004. Cellulosomes: plant-cell-walldegrading enzyme complexes. Nat. Rev. Microbiol. 2: 541–551.10.1038/nrmicro925Search in Google Scholar PubMed

Duan H.K., Wang H.S., Ma B.C., Jiang P.Z., Tu P.P., Ni Z.Z., Li X.D., Li M., Ma X.F., Wang B., Wu R. & Li M.G. 2015. Codon optimization and expression of isrish in Pichia pastoris GS115. Int. J. Biol. Macromol. 79: 21–26.10.1016/j.ijbiomac.2015.04.030Search in Google Scholar

Fang B., Liang B.F. & He G.Y. 2007. Synonymous codon usage bias and overexpression of a synthetic gene encoding interferon α2b in yeast. Virolog. Sin. 22: 226–232.10.1007/s12250-007-0026-zSearch in Google Scholar

Fazary A.E. & Ju Y.H. 2007. Feruloyl esterases as biotechnological tools: current and future perspectives. Acta Biochim. Biophys. Sin. 39: 811–828.10.1111/j.1745-7270.2007.00348.xSearch in Google Scholar

Fazary A.E., Hamad H.A., Lee J.C., Koskei T., Lee C.K. & Ju Y.H. 2010. Expression of feruloyl esterase from Aspergillus awamori in Escherichia coli: characterization and crystal studies of the recombinant enzyme. Int. J. Biol. Macromol. 46: 440–444.10.1016/j.ijbiomac.2010.01.020Search in Google Scholar

Gong Y.Y., Yin X., Zhang H.M., Wu M.C., Tang C.D., Wang J.Q. & Pang Q.F. 2013. Cloning, expression of a feruloyl esterase from Aspergillus usamii E001 and its applicability in generating ferulic acid from wheat bran. J. Ind. Microbiol. Biotechnol. 40: 1433–1441.10.1007/s10295-013-1339-6Search in Google Scholar

He M., Wu D., Wu J. & Chen J. 2014. Enhanced expression of endoinulinase from Aspergillus niger by codon optimization in Pichia pastoris and its application in inulooligosaccharide production. J. Ind. Microbiol. Biotechnol. 41: 105–114.10.1007/s10295-013-1341-zSearch in Google Scholar

Juge N., Williamson G., Puigserver A., Cummings N.J., Connerton I.F. & Faulds C.B. 2001. High-level production of recombinant Aspergillus niger cinnamoyl esterase (FAEA) in the methylotrophic yeast Pichia pastoris. FEMS Yeast Res. 1: 127–132.10.1111/j.1567-1364.2001.tb00023.xSearch in Google Scholar

Mathew S. & Abraham T.E. 2004. Ferulic acid: an antioxidant found naturally in plant cell walls and feruloyl esterases involved in its release and their applications. Crit. Rev. Biotechnol. 24: 59–83.10.1080/07388550490491467Search in Google Scholar

Mathew S. & Abraham T.E. 2005. Studies on the production of feruloyl esterase from cereal brans and sugar cane bagasse by microbial fermentation. Enzyme Microb. Technol. 36: 565–570.10.1016/j.enzmictec.2004.12.003Search in Google Scholar

Schroeter H., Williams R.J., Matin R., Iversen L. & Rice-Evans C.A. 2000. Phenolic antioxidants attenuate neuronal cell death following uptake of oxidized low-density lipoprotein. Free Radical Biol. Med. 29: 1222–1233.10.1016/S0891-5849(00)00415-9Search in Google Scholar

Teng D., Fan Y., Yang Y.L., Tian Z.G., Luo J. & Wang J.H. 2007. Codon optimization of Bacillus licheniformis β-1,3-1,4-glucanase gene and its expression in Pichia pastoris. Appl. Microbiol. Biotechnol. 74: 1074–1083.10.1007/s00253-006-0765-zSearch in Google Scholar

Wang Y.R., Zhang H.L., He Y.Z., Luo H.Y. & Yao B. 2007. Characterization, gene cloning, and expression of a novel xylanase XYNB from Streptomyces olivaceoviridis A1. Aquaculture 267: 328–334.10.1016/j.aquaculture.2007.03.005Search in Google Scholar

Wende G. & Fry S.C. 1997. O-feruloylated, O-acetylated oligosaccharides as sidechains of grass xylan. Phytochemistry 44: 1011–1018.10.1016/S0031-9422(96)00648-6Search in Google Scholar

Wong D.W.S., Chan V.J., Batt S.B., Sarath G. & Liao H. 2011. Engineering Saccharomyces cerevisiae to produce feruloyl esterase for the release of ferulic acid from switchgrass. J. Ind. Microbiol. Biotechnol. 38: 1961–1967.10.1007/s10295-011-0985-9Search in Google Scholar

Xiao B., Chi X., Zhang L., Qu H., Liu Y., Wang X. & Zhou J. 2014. Enhanced expression of GCRV VP6 in CIK cells by relative sequence optimization. Appl. Microbiol. Biotechnol. 173: 2129–2139.10.1007/s12010-014-1012-1Search in Google Scholar

Zeng Y., Yin X., Wu M.C., Yu T., Feng F., Zhu T.D. & Pang Q.F. 2014. Expression of a novel feruloyl esterase from Aspergillus oryzae in Pichia pastoris with esterification activity. J. Mol. Catal. B – Enzym. 110: 140–146.10.1016/j.molcatb.2014.10.002Search in Google Scholar

Zhang S.B., Wang L., Liu Y., Zhai H.C., Cai J.P. & Hu Y.S. 2015. Expression of feruloyl esterase A fromAspergillus terreus and its application in biomass degradation. Protein Expr. Purif. 115: 153–157.10.1016/j.pep.2015.08.015Search in Google Scholar

Zhang S.B., Zhai H.C., Wang L. & Yu G.H. 2013. Expression, purification and characterization of a feruloyl esterase A from Aspergillus flavus. Protein Expr. Purif. 92: 36–40.10.1016/j.pep.2013.08.009Search in Google Scholar

Zhang W.H., Bevins M.A., Plantz B.A., Smith L.A. & Meagher M.M. 2000. Modeling Pichia pastoris growth on methanol and optimizing the production of a recombinant protein, the heavy chain fragment C of botulinum neurotoxin, serotype A. Biotechnol. Bioeng. 70: 1–8.10.1002/1097-0290(20001005)70:1<1::AID-BIT1>3.0.CO;2-YSearch in Google Scholar

Zhao X., Huo K.K. & Li Y.Y. 2000. Synonymous codon usage in Pichia pastoris. Chinese J. Biotechnol. 16: 308–311.Search in Google Scholar

Zhou M., Huang Z.Q., Zhou B., Luo Y.L., Jia G., Liu G.M., Zhao H. & Chen X.L. 2015. Construction and expression of two-copy engineered yeast of feruloyl esterase. Electron. J. Biotechnol. 18: 338–342.10.1016/j.ejbt.2015.06.004Search in Google Scholar

Zhou Y.Y., Liu X.L., Chen J., Hu Y.H. & Hou Y.H. 2014. Cloning of feruloyl esterase gene from Aspergillus niger h408 and high-efficient expression in Pichia pastoris. Acta Microbiol. Sin. 54: 876–881.Search in Google Scholar