Estimating Number of Clusters Based on a General Similarity Matrix with Application to Microarray Data

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1. Article
2. Self-Organizing Maps with Statistical Phase Synchronization (SOMPS) for Analyzing Cell Cycle-Specific Gene Expression Data
3. Coalescent Time Distributions in Trees of Arbitrary Size
4. Quantifying the Association between Gene Expressions and DNA-Markers by Penalized Canonical Correlation Analysis
5. Nonparametric Functional Mapping of Quantitative Trait Loci Underlying Programmed Cell Death
6. Accommodating Uncertainty in a Tree Set for Function Estimation
7. Drifting Markov Models with Polynomial Drift and Applications to DNA Sequences
8. Comparing the Characteristics of Gene Expression Profiles Derived by Univariate and Multivariate Classification Methods
9. Calculating Confidence Intervals for Prediction Error in Microarray Classification Using Resampling
10. Structure Learning in Nested Effects Models
11. Correcting the Estimated Level of Differential Expression for Gene Selection Bias: Application to a Microarray Study
12. Adapting Prediction Error Estimates for Biased Complexity Selection in High-Dimensional Bootstrap Samples
13. Adaptive Choice of the Number of Bootstrap Samples in Large Scale Multiple Testing
14. Re-Cracking the Nucleosome Positioning Code
15. Semi-Parametric Differential Expression Analysis via Partial Mixture Estimation
16. A SNP Streak Model for the Identification of Genetic Regions Identical-by-descent
17. Detecting Two-Locus Gene-Gene Effects Using Monotonisation of the Penetrance Matrix
18. Modeling DNA Methylation in a Population of Cancer Cells
19. Phenotyping Genetic Diseases Using an Extension of µ-Scores for Multivariate Data
20. The Estimator of the Optimal Measure of Allelic Association: Mean, Variance and Probability Distribution When the Sample Size Tends to Infinity
21. Predicting Protein Concentrations with ELISA Microarray Assays, Monotonic Splines and Monte Carlo Simulation
22. A Comparison of Normalization Techniques for MicroRNA Microarray Data
23. Collapsing SNP Genotypes in Case-Control Genome-Wide Association Studies Increases the Type I Error Rate and Power
24. Estimating Number of Clusters Based on a General Similarity Matrix with Application to Microarray Data
25. Data Distribution of Short Oligonucleotide Expression Arrays and Its Application to the Construction of a Generalized Intellectual Framework
26. Approximately Sufficient Statistics and Bayesian Computation
27. A Composite-Conditional-Likelihood Approach for Gene Mapping Based on Linkage Disequilibrium in Windows of Marker Loci
28. Statistical Methods in Integrative Analysis for Gene Regulatory Modules
29. Reducing Spatial Flaws in Oligonucleotide Arrays by Using Neighborhood Information
30. Pattern Classification of Phylogeny Signals
31. A Unification of Multivariate Methods for Meta-Analysis of Genetic Association Studies
32. Importance Sampling for the Infinite Sites Model
33. Supervised Distance Matrices
34. Addressing the Shortcomings of Three Recent Bayesian Methods for Detecting Interspecific Recombination in DNA Sequence Alignments
35. A Sparse PLS for Variable Selection when Integrating Omics Data
36. Software Communication
37. TRAB: Testing Whether Mutation Frequencies Are Above an Unknown Background