3-Hydroxy-3-methylglutaryl-coenzyme A lyase deficiency: case report of a child with rare HMGCL gene variants
-
Milena Bjelica
, Aleksandra Stojadinović
, Marija Knežević Pogančev
, Katarina Koprivšek
, Jӧrn Oliver Sass
, Sarah C. Grünert
, Falko Wünsche
Abstract
Objectives
3-Hydroxy-3-methylglutaryl-coenzyme A lyase deficiency (HMGCLD) is a rare autosomal recessive organic aciduria. Most patients present within the first year of life with metabolic decompensation, which can cause neurological damage or death if untreated.
Case presentation
A 20-month-old previously healthy boy was admitted to the hospital after a nocturnal seizure. Upon admission, the child was unconscious and laboratory analysis revealed severe hypoglycemia and metabolic acidosis without ketonuria. Hypoglycemia was corrected with a bolus of 10 % glucose followed by continuous glucose-electrolyte infusion. Status epilepticus was treated with midazolam and phenobarbital. Magnetic resonance imaging (MRI) performed on the second hospital day, revealed bilateral and symmetric T2 hyperintense lesions in the cortex, supratentorial white matter, basal ganglia and central pons, along with slight white matter volume reduction. Urinary organic acids indicated HMGCLD. HMG-CoA lyase activity in immortalized lymphocytes was significantly decreased. Sanger sequencing of the HMGCL gene identified a heterozygous sequence variant, c.796T>C, p.(Cys266Arg). MLPA analysis showed a reduced gene dosage for exons 3 and 4 of HMGCL, consistent with a heterozygous deletion. Upon diagnosis, a low-protein diet was recommended, as well as oral l-carnitine therapy with a high-calorie supplement drink at night. Initially, the child had slightly impaired psychomotor development, which normalized by age 3.5. He was without metabolic crises or seizures since diagnosis.
Conclusions
In any child presenting with hypoketotic hypoglycemia and metabolic acidosis of unknown etiology, HMGCLD should be considered. Given the rarity of HMGCLD and its sporadic cases across Europe, management should involve a well-experienced multidisciplinary team.
Funding source: MVZ Dr. Eberhard & Partner Dortmund
Acknowledgments
Research of J.O.S. is funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – project numbers 514177501, 528562393-FIP26, and 538669957.
-
Research ethics: Ethics approval was obtained from institutional Ethics Committee (EC letter dated 2 October 2024; document ID 4742-4).
-
Informed consent: Informed consent was obtained from the legal guardian of the patient included in this study.
-
Author contributions: All authors have accepted responsibility for the entire content of this manuscript and approved its submission.
-
Use of Large Language Models, AI and Machine Learning Tools: None declared.
-
Conflict of interest: The authors state no conflict of interest.
-
Research funding: MVZ Dr. Eberhard & Partner Dortmund: testing of the parental samples.
-
Data availability: Not applicable.
References
1. Sass, JO. Inborn errors of ketogenesis and ketone body utilization. J Inherit Metab Dis 2012;35:23–8. https://doi.org/10.1007/s10545-011-9324-6.Suche in Google Scholar PubMed
2. Sass, JO, Fukao, T, Mitchell, G. Inborn errors of ketone body metabolism and transport: an update for the clinic and for clinical laboratories. J Inborn Errors Metab 2018;6:1–7. https://doi.org/10.1177/2326409818771101.Suche in Google Scholar
3. Grünert, SC, Sass, JO. 3-hydroxy-3-methylglutaryl-coenzyme A lyase deficiency: one disease - many faces. Orphanet J Rare Dis 2020;15:48. https://doi.org/10.1186/s13023-020-1319-7.Suche in Google Scholar PubMed PubMed Central
4. Grünert, SC, Schlatter, SM, Schmitt, RN, Gemperle-Britschgi, C, Mrázová, L, Balcı, MC, et al.. 3-Hydroxy-3-methylglutaryl-coenzyme A lyase deficiency: clinical presentation and outcome in a series of 37 patients. Mol Genet Metabol 2017;121:206–15. https://doi.org/10.1016/j.ymgme.2017.05.014.Suche in Google Scholar PubMed
5. Sass, JO, Grünert, SC. Disorders of ketone body metabolism and transport. In: Blau, N, Dionisi Vici, C, Ferreira, CR, Vianey-Saban, C, van Karnebeek, CDM, editors. Physician’s guide to the diagnosis, treatment, and follow-up of inherited metabolic diseases. Switzerland: Springer Nature; 2022:967–81 pp.Suche in Google Scholar
6. Zafeiriou, DI, Vargiami, E, Mayapetek, E, Augoustidou-Savvopoulou, P, Mitchell, GA. 3-Hydroxy-3-methylglutaryl coenzyme a lyase deficiency with reversible white matter changes after treatment. Pediatr Neurol 2007;37:47–50. https://doi.org/10.1016/j.pediatrneurol.2007.02.007.Suche in Google Scholar PubMed
7. Roland, D, Jissendi-Tchofo, P, Briand, G, Vamecq, J, Fontaine, M, Ultré, V, et al.. Coupled brain and urine spectroscopy - in vivo metabolomic characterization of HMG-CoA lyase deficiency in 5 patients. Mol Genet Metabol 2017;121:111–8. https://doi.org/10.1016/j.ymgme.2017.03.006.Suche in Google Scholar PubMed
8. Roberts, JR, Narasimhan, C, Miziorko, HM. Evaluation of cysteine 266 of human 3-hydroxy-3-methylglutaryl-CoA lyase as a catalytic residue. J Biol Chem 1995;270:17311–6. https://doi.org/10.1074/jbc.270.29.17311.Suche in Google Scholar PubMed
9. Fu, Z, Runquist, JA, Montgomery, C, Miziorko, HM, Kim, JJ. Functional insights into human HMG-CoA lyase from structures of Acyl-CoA-containing ternary complexes. J Biol Chem 2010;285:26341–9. https://doi.org/10.1074/jbc.m110.139931.Suche in Google Scholar PubMed PubMed Central
10. Montgomery, C, Miziorko, HM. Influence of multiple cysteines on human 3-hydroxy-3-methylglutaryl-CoA lyase activity and formation of inter-subunit adducts. Arch Biochem Biophys 2011;511:48–55. https://doi.org/10.1016/j.abb.2011.04.004.Suche in Google Scholar PubMed PubMed Central
11. In silico-analyses (Software Alamut): mutation Taster 2021 (deleterious): PolyPhen-2 (probably damaging), SIFT (predict not tolerated). Available from: https://www.mutationtaster.org Suche in Google Scholar
12. gnomAD (rs757884073). Available from: https://gnomad.broadinstitute.org/variant/1-24130970-A-G Suche in Google Scholar
13. Richards, S, Aziz, N, Bale, S, Bick, D, Das, S, Gastier-Foster, J, et al.. ACMG Laboratory Quality Assurance Committee. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med 2015;17:405–24. https://doi.org/10.1038/gim.2015.30.Suche in Google Scholar PubMed PubMed Central
14. Köksal, T, Gündüz, M, Özaydın, E, Azak, E. 3-HMG coenzyme A lyase deficiency: macrocephaly and left ventricular noncompaction with a novel mutation. Indian J Pediatr 2015;82:645–8. https://doi.org/10.1007/s12098-015-1722-6.Suche in Google Scholar PubMed
15. Aoyama, Y, Yamamoto, T, Sakaguchi, N, Ishige, M, Tanaka, T, Ichihara, T, et al.. Application of multiplex ligation-dependent probe amplification, and identification of a heterozygous Alu-associated deletion and a uniparental disomy of chromosome 1 in two patients with 3-hydroxy-3-methylglutaryl-CoA lyase deficiency. Int J Mol Med 2015;35:1554–60. https://doi.org/10.3892/ijmm.2015.2184.Suche in Google Scholar PubMed PubMed Central
16. Wang, SP, Robert, MF, Gibson, KM, Wanders, RJ, Mitchell, GA. 3-Hydroxy-3-methylglutaryl CoA lyase (HL): mouse and human HL gene (HMGCL) cloning and detection of large gene deletions in two unrelated HL-deficient patients. Genomics (San Diego, Calif) 1996;33:99–104. https://doi.org/10.1006/geno.1996.0164.Suche in Google Scholar PubMed
© 2025 Walter de Gruyter GmbH, Berlin/Boston
Artikel in diesem Heft
- Frontmatter
- Mini Review
- Transition of care from childhood/adolescence to adulthood in familial hypercholesterolemia
- Original Articles
- Performance of adult height prediction methods in 6 to 8-year-old girls with GnRH-dependent precocious puberty
- Height velocity in the detection of growth disorders reconsidered: a retrospective analysis of the DONALD study
- Differentiating transient and permanent congenital hypothyroidism: predictive clues from Istanbul, Türkiye
- Evaluation of thyrotrophic and lactotrophic reserves in patients with pituitary dwarfism with and without empty sella turcica
- Exploring the impact of androgen levels on depression and anxiety in adolescent females: a clinical perspective
- The diagnostic value of stimulated androgen ratios in 5-alpha reductase type 2 (SRD5A2) deficiency: a case series and review of the literature
- Prolonged symptom duration and the potential for gradual progression in pediatric adrenocortical tumors: observations from the MET studies
- Distinguishing organic from idiopathic central precocious puberty: clinical characteristics and predictive factors for organic etiology in a multicenter Italian cohort study
- Endocrinopathies associated with pediatric common variable immunodeficiency
- Genetic, neuroimaging, and clinical characteristics of a cohort of individuals with L-2-hydroxyglutaric aciduria from Türkiye
- Short Communications
- Stress hyperglycemia in pediatric patients as a risk factor for type 1 diabetes – a single center experience
- Observations of the effect of gonadotropin-releasing hormone analog treatment on psychosocial well-being in transgender youth and their caregivers – a pilot study
- Letter to the Editor
- GNB1 haploinsufficiency presents as monogenic obesity syndrome
- Case Reports
- Rare pediatric insulinoma case diagnosed by endoscopic ultrasonography: insights into endogenous hyperinsulinemic hypoglycemia
- Caudal epidural steroid injection as a novel therapy for treatment-induced neuropathy of diabetes in children: report of two cases
- A novel homozygous missense DNAJC3 variant in syndromic juvenile-onset diabetes
- 3-Hydroxy-3-methylglutaryl-coenzyme A lyase deficiency: case report of a child with rare HMGCL gene variants
Artikel in diesem Heft
- Frontmatter
- Mini Review
- Transition of care from childhood/adolescence to adulthood in familial hypercholesterolemia
- Original Articles
- Performance of adult height prediction methods in 6 to 8-year-old girls with GnRH-dependent precocious puberty
- Height velocity in the detection of growth disorders reconsidered: a retrospective analysis of the DONALD study
- Differentiating transient and permanent congenital hypothyroidism: predictive clues from Istanbul, Türkiye
- Evaluation of thyrotrophic and lactotrophic reserves in patients with pituitary dwarfism with and without empty sella turcica
- Exploring the impact of androgen levels on depression and anxiety in adolescent females: a clinical perspective
- The diagnostic value of stimulated androgen ratios in 5-alpha reductase type 2 (SRD5A2) deficiency: a case series and review of the literature
- Prolonged symptom duration and the potential for gradual progression in pediatric adrenocortical tumors: observations from the MET studies
- Distinguishing organic from idiopathic central precocious puberty: clinical characteristics and predictive factors for organic etiology in a multicenter Italian cohort study
- Endocrinopathies associated with pediatric common variable immunodeficiency
- Genetic, neuroimaging, and clinical characteristics of a cohort of individuals with L-2-hydroxyglutaric aciduria from Türkiye
- Short Communications
- Stress hyperglycemia in pediatric patients as a risk factor for type 1 diabetes – a single center experience
- Observations of the effect of gonadotropin-releasing hormone analog treatment on psychosocial well-being in transgender youth and their caregivers – a pilot study
- Letter to the Editor
- GNB1 haploinsufficiency presents as monogenic obesity syndrome
- Case Reports
- Rare pediatric insulinoma case diagnosed by endoscopic ultrasonography: insights into endogenous hyperinsulinemic hypoglycemia
- Caudal epidural steroid injection as a novel therapy for treatment-induced neuropathy of diabetes in children: report of two cases
- A novel homozygous missense DNAJC3 variant in syndromic juvenile-onset diabetes
- 3-Hydroxy-3-methylglutaryl-coenzyme A lyase deficiency: case report of a child with rare HMGCL gene variants