Brown rot gene expression and regulation in acetylated and furfurylated wood: a complex picture

References

Alfredsen, G., Fossdal, C.G., Nagy, N.E., Jellison, J., Goodell, B. (2016a) Furfurylated Wood: impact on Postia placenta gene expression and oxalate crystal formation. Holzforschung 70:947–962.10.1515/hf-2015-0203Search in Google Scholar

Alfredsen, G., Pilgård, A., Fossdal, C.G. (2016b) Characterisation of Postia placenta colonisation during 36 weeks in acetylated southern yellow pine sapwood at three acetylation levels including genomic DNA and gene expression quantification of the fungus. Holzforschung 70:1055–1065.10.1515/hf-2016-0009Search in Google Scholar

Arantes, V., Milagres, A.M.F., Filley, T.R., Goodell, B. (2011) Lignocellulosic polysaccharides and lignin degradation by wood decay fungi: the relevance of nonenzymatic Fenton-based reactions. J. Ind. Microbiol. Biotechnol. 38:541–555.10.1007/s10295-010-0798-2Search in Google Scholar PubMed

Arantes, V., Jellison, J., Goodell, B. (2012) Peculiarities of brown-rot fungi and biochemical fenton reaction with regard to their potential as a model for bioprocessing biomass. Appl. Microbiol. Biotechnol. 94:323–338.10.1007/s00253-012-3954-ySearch in Google Scholar PubMed

Baldrian, P., Valášková, V. (2008) Degradation of cellulose by basidiomycetous fungi. FEMS Microbiol. Rev. 32:501–521.10.1111/j.1574-6976.2008.00106.xSearch in Google Scholar PubMed

Beck, G., Thybring, E.E., Thygesen, L.G., Hill, C. (2017) Characterization of moisture in acetylated and propionylated radiata pine using low-field nuclear magnetic resonance (LFNMR) relaxometry. Holzforschung 1:1–9.10.1515/hf-2017-0072Search in Google Scholar

Beck, G., Hegnar, O.A., Fossdal, C.G., Alfredsen, G. (2018) Acetylation of Pinus radiata delays hydrolytic depolymerisation by the brown-rot fungus Rhondonia placenta. Int. Biodeterior. Biodegradation. 135:39–52.10.1016/j.ibiod.2018.09.003Search in Google Scholar

Beck, G., Hill, C., Cocher, P.M., & Alfredsen, G. (2019) Accessibility of hydroxyl groups in furfurylated wood at different weight percent gains and during Rhodonia placenta decay. Eur. J. Wood Prod. 77:953–955.10.1007/s00107-019-01445-4Search in Google Scholar

Curling, S.F., Clausen, C.A., Winandy, J.E. (2002) Relationships between mechanical properties, weight loss and chemical composition of wood during incipient brown-rot decay. Forest Prod. J. 52:34–39.Search in Google Scholar

Eaton, R.A., Hale, M.D.C. Decay, Pests and Protection. Chapman & Hall, Cambridge, 1993.Search in Google Scholar

Ehmcke, G., Pilgård, A., Koch, G., Richter, K. (2017) Topochemical analyses of furfuryl alcohol-modified radiata pine (Pinus radiata) by UMSP, light microscopy and SEM. Holzforschung 71: 821–831.10.1515/hf-2016-0219Search in Google Scholar

Enami, S., Sakamoto, Y., Colussi, A.J. (2014) Fenton chemistry at aqueous interfaces. Proc. Natl. Acad. Sci. USA 111:623–628.10.1073/pnas.1314885111Search in Google Scholar PubMed PubMed Central

Esteves, B., Nunes, L., Pereira, H. (2010) Properties of furfurylated wood (Pinus pinaster). Eur. J. Wood Wood Prod. 69:521–525.10.1007/s00107-010-0480-4Search in Google Scholar

Fenton, H.J.H. (1894) Oxidation of tartaric acid in the presence of iron. J. Chem. Soc., Trans. 65:899–911.10.1039/CT8946500899Search in Google Scholar

Floudas, D. (2012) The paleozoic origin of enzymatic lignin decomposition reconsructed from 31 fungal genomes. Science 80:1715–1719.10.1126/science.1221748Search in Google Scholar

Goldstein, I.S. (1960) Impregnating solutions and methods. GB Patent 846,680.Search in Google Scholar

Goodell, B. (2003) Brown-rot fungal degradation of wood: our evolving view. In: Wood Deterioration and Preservation. Eds. Goodell, B., Nicholas, D.D., Schultz, T.P. ACS Symposium Series, Am Chem Soc. Washington, DC. pp 97–118.10.1021/bk-2003-0845.ch006Search in Google Scholar

Goodell, B., Jellison, J., Liu, J., Daniel, G., Paszczynski, A., Fekete, F.A., Paszcynski, F., Fekete, F., Krishnamurthy, S., Jun, L., Xu, G. (1997) Low molecular weight chelators and phenolic compounds isolated from wood decay fungi and their role in the fungal biodegradation of wood. J. Biotechnol. 53:133–162.10.1016/S0168-1656(97)01681-7Search in Google Scholar

Goodell, B., Zhu, Y., Kim, S., Kafle, K., Eastwood, D., Daniel, G., Jellison, J., Yoshida, M., Groom, L., Pingali, S.V., Neill, H.O. (2017) Modification of the nanostructure of lignocellulose cell walls via a non-enzymatic lignocellulose deconstruction system in brown rot wood – decay fungi. Biotechnol. Biofuels 10:1–15.10.1186/s13068-017-0865-2Search in Google Scholar

Guillen, F., Gomez-Toribio, V., Martinez, M.J., Martinez, A.T. (2000) Production of hydroxyl radical by the synergistic action of fungal laccase and aryl alcohol oxidase. Arch. Biochem. Biophys. 383:142–147.10.1006/abbi.2000.2053Search in Google Scholar

Hammel, K.E., Alexander, N., Kapich, A.N., Jensen Jr, K.A., Ryan, Z.C. (2002) Reactive oxygen species as agents of wood decay by fungi. Enzyme Microb. Technol. 30:445–453.10.1016/S0141-0229(02)00011-XSearch in Google Scholar

Hill, C. Wood Modification: Chemical, Thermal and Other Processes. John Wiley and Sons, Ltd., England, 2006.10.1002/0470021748Search in Google Scholar

Hill, C.A.S., Forster, S.C., Farahani, M.R.M., Hale, M.D.C., Ormondroyd, G., Williams, G.R. (2005) An investigation of cell wall micropore blocking as a possible mechanism for the decay resistance of anhydride modified wood. Int. Biodeterior. Biodegradation 55:69–76.10.1016/j.ibiod.2004.07.003Search in Google Scholar

Hill, C.A.S., Curling, S.F.J., Kwon, H., Marty, V. (2009) Decay resistance of acetylated and hexanoylated hardwood and softwood species exposed to Coniophora puteana. Holzforschung 63:619–625.10.1515/HF.2009.124Search in Google Scholar

Hingston, J.A., Collins, C.D., Murphy, R.J., Lester, J.N. (2000) Leaching of chromated copper arsenate wood preservatives: a review. Environ. Pollut. 111:53–66.10.1016/S0269-7491(00)00030-0Search in Google Scholar

Ibach, R. (2005) Biological properties. In: Handbook of Wood Chemistry and Wood Composites. Ed. Rowell, R.M. CRC Press, Boca Raton, FL, pp. 99–120.Search in Google Scholar

Jensen, K.A., Ryan, Z.C., Vanden Wymelenberg, A., Cullen, D., Hammel, K.E. (2002) An NADH: quinone oxidoreductase active during biodegradation by the brown-rot basidiomycete Gloeophyllum trabeum. Appl. Environ. Microbiol. 68:2699–2703.10.1128/AEM.68.6.2699-2703.2002Search in Google Scholar PubMed PubMed Central

KIFS (1998) Kemikalieinspektionens Föreskrifter (KIFS 1998:8) Om Kemiska Produkter Och Biotekniska Organismer.Search in Google Scholar

Kirk, T.K., Ibach, R., Mozuch, M.D., Conner, A.H., Highley, L. (1991) Characteristics of cotton cellulose depolymerized by a brown-rot fungus, by acid, or by chemical oxidants. Holzforschung 45:239–244.10.1515/hfsg.1991.45.4.239Search in Google Scholar

Koenigs, J.W. (1974) Hydrogen peroxide and iron: a proposed system for decomposition of wood by brown-rot basidiomycetes. Wood Fiber Sci. 6:66–79.Search in Google Scholar

Lande, S., Westin, M., Schneider, M. (2004) Properties of furfurylated wood. Scand. J. Forest Res. 19:22–30.10.1080/0282758041001915Search in Google Scholar

Lande, S., Eikenes, M., Westin, M., Schneider, M. (2008) Furfurylation of wood: chemistry; properties and commerzialisation. Developemennt of commercial wood preservatives. ACS Symp. Ser. 982:337–355.10.1021/bk-2008-0982.ch020Search in Google Scholar

Larsson-Brelid, P. Acetylation of Solid Wood. Chalmers University of Technology, Sweden, 1998.Search in Google Scholar

Larsson Brelid, P., Simonson, R., Bergman, Ö., Nilsson, T. (2000) Resistance of acetylated wood to biological degradation. Holz. Roh. Werkst. 58:331–337.10.1007/s001070050439Search in Google Scholar

Levasseur, A., Drula, E., Lombard, V., Coutinho, P.M., Henrissat, B. (2013) Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes. Biotechnol. Biofuels 6:1–14.10.1186/1754-6834-6-41Search in Google Scholar PubMed PubMed Central

Martinez, D., Challacombe, J., Morgenstern, I., Hibbett, D., Schmoll, M., Kubicek, C.P., Ferreira, P., Ruiz-Duenas, F.J., Martinez, A.T., Kersten, P., Hammel, K.E., Vanden Wymelenberg, A., Gaskell, J., Lindquist, E., Sabat, G., Bondurant, S.S., Larrondo, L.F., Canessa, P., Vicuna, R., Yadav, J., Doddapaneni, H., Subramanian, V., Pisabarro, A.G., Lavín, J.L., Oguiza, J.A., Master, E., Henrissat, B., Coutinho, P.M., Harris, P., Magnuson, J.K., Baker, S.E., Bruno, K., Kenealy, W., Hoegger, P.J., Kües, U., Ramaiya, P., Lucas, S., Salamov, A., Shapiro, H., Tu, H., Chee, C.L., Misra, M., Xie, G., Teter, S., Yaver, D., James, T., Mokrejs, M., Pospisek, M., Grigoriev, I.V., Brettin, T., Rokhsar, D., Berka, R., Cullen, D. (2009) Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proc. Natl. Acad. Sci. U.S.A. 106:1954–1959.10.1073/pnas.0809575106Search in Google Scholar PubMed PubMed Central

Nordic Wood Preservation Council. Conditions for approval of industrially protected wood in the Nordic Countries Part 4: Modified wood. Nordic Wood Preservation Council, Stockholm, Sweden, 2017.Search in Google Scholar

Nordstierna, L., Lande, S., Westin, M., Karlsson, O., Furó., I. (2008) Towards novel wood-based materials: Chemical bonds between lignin-like model molecules and poly(furfuryl alcohol) studied by NMR. Holzforschung 62:709–713.10.1515/HF.2008.110Search in Google Scholar

Papadopoulos, A.N., Hill, C.A.S. (2002) The biological effectiveness of wood modified with linear chain carboxylic acid anhydrides against Coniophora puteana. Holz. Roh. Werkst. 60:329–332.10.1007/s00107-002-0327-8Search in Google Scholar

Passarini, L., Zelinka, S.L., Glass, S.V., Hunt, C.G. (2017) Effect of weight percent gain and experimental method on fiber saturation point of acetylated wood determined by differential scanning calorimetry. Wood Sci. Technol. 51:1291–1305.10.1007/s00226-017-0963-0Search in Google Scholar

Paszcynski, F., Crawford, R., Funk, D., Goodell, B. (1999) De novo synthesis of 4,5-dimethoxycatechol and 2,5-dimethoxyhydroquinone by the brown rot fungus Gloeophyllum trabeum. Appl. Environ. Microbiol. 65:674–679.10.1128/AEM.65.2.674-679.1999Search in Google Scholar PubMed PubMed Central

Presley, G.N., Zhang, J., Schilling, J.S. (2016) A genomics-informed study of oxalate and cellulase regulation by brown rot wood-degrading fungi. Fungal Genet. Biol. 112:64–70.10.1016/j.fgb.2016.08.004Search in Google Scholar PubMed

Qi, W., Jellison, J. (2004) Induction and catalytic properties of an intracellular NADH-dependent 1,4-benzoquinone reductase from the brown-rot basidiomycete Gloeophyllum trabeum. Int. Biodeterior. Biodegradation 54:53–60.10.1016/j.ibiod.2004.02.001Search in Google Scholar

Rapp, A.O., Brischke, C., Welzbacher, C.R. (2006) Interrelationship between the severity of heat treatments and sieve fractions after impact ball milling: a mechanical test for quality control of thermally modified wood. Holzforschung 60:64–70.10.1515/HF.2006.012Search in Google Scholar

Regulation (EC) No 1907/2006 of the European Parliament and of the Council of 18 December 2006 concerning the Registration, Evaluation, Authorisation and Restriction of Chemicals (REACH) 31: XVII.Search in Google Scholar

Ringman, R., Pilgård, A., Richter, K. (2014a) Effect of wood modification on gene expression during incipient Postia placenta decay. Int. Biodeterior. Biodegradation 86:86–91.10.1016/j.ibiod.2013.09.002Search in Google Scholar

Ringman, R., Pilgård, A., Brischke, C., Richter, K. (2014b) Mode of action of brown rot decay resistance in modified wood: a review. Holzforschung 68:239–246.10.1515/hf-2013-0057Search in Google Scholar

Ringman, R., Pilgård, A., Kölle, M., Brischke, C., Richter, K. (2015) Effects of thermal modification on Postia placenta wood degradation dynamics: measurements of ML, structural integrity and gene expression. Wood Sci. Technol. 50:385–397.10.1007/s00226-015-0791-zSearch in Google Scholar

Ringman, R., Pilgård, A., Brischke, C., Windeisen, E., Richter, K. (2017) Incipient brown rot decay in modified wood: patterns of ML, structural integrity, moisture and acetyl content in high resolution. Int. Wood Prod. J. 89:172–182.10.1080/20426445.2017.1344382Search in Google Scholar

Rowell, R.M. (2005) Wood Chemistry and Wood Composites. Taylor & Francis, Boca Raton.10.1201/9780203492437Search in Google Scholar

Rowell, R.M., Simonson, R., Hess, S., Plackett, D.V., Cronshaw, D., Dunningham, E. (1994) Acetyl distribution in acetylated whole wood and reactivity of isolated wood cell wall components to acetic anhydride. Wood Fiber Sci. 26:11–18.Search in Google Scholar

Schmöllerl, B., Alfredsen, B., Fossdal, C.G., Westin, M., Steitz, A. (2011) Molecular Investigation of Postia placenta Growing in Modified Wood. Document No. IRG/WP 11-10756. The International Research Group on Wood Protection. Stockholm, Sweden.Search in Google Scholar

Shimokawa, T., Nakamura, M., Hayahashi, N., Ishihara, M. (2004) Production of 2,5-dimethoxyhydroquinone by the brown-rot fungus Serpula lacrymans to drive extracellular Fenton reaction. Holzforschung 58:305–310.10.1515/HF.2004.047Search in Google Scholar

Tanaka, H., Yoshida, G., Baba, Y., Matsumura, K., Wasada, H., Murata, J., Agawa, M., Itakura, S., Enoki, A. (2007) Characterization of a hydroxyl-radical-producing glycoprotein and its presumptive genes from the white-rot basidiomycete Phanerochaete chrysosporium. J. Biotechnol. 128:500–511.10.1016/j.jbiotec.2006.12.010Search in Google Scholar PubMed

Thybring, E.E. (2017) Water relations in untreated and modified wood under brown-rot and white-rot decay. Int. Biodeterior. Biodegradation 118:134–142.10.1016/j.ibiod.2017.01.034Search in Google Scholar

Townsend, T., Dubey, B., Tolaymat, T., Solo-Gabriele, H. (2005) Preservative leaching from weathered CCA-treated wood. J. Environ. Manage. 75:105–113.10.1016/j.jenvman.2004.11.009Search in Google Scholar PubMed

van der Lugt, P., Vogtländer, J.G. (2014) Wood acetylation: a potential route towards climate change mitigation. WIT Trans. Built Environ. 142:241–252.10.2495/ARC140221Search in Google Scholar

Wei, D., Houtman, C.J., Kapich, A.N., Hunt, C.G., Cullen, D., Hammel, K.E. (2010) Laccase and its role in production of extracellular reactive oxygen species during wood decay by the brown rot basidiomycete Postia placenta. Appl. Environ. Microbiol. 76:2091–2097.10.1128/AEM.02929-09Search in Google Scholar PubMed PubMed Central

Winandy, J.E., Morrell, J.J. (1992) Relationship between incipient decay, strength, and chemical composition of douglas-fir heartwood. Wood Fiber Sci. 25:278–288.Search in Google Scholar

Zhang, J., Schilling, J.S. (2017) Role of carbon source in the shift from oxidative to hydrolytic wood decomposition by Postia placenta. Fungal Genet. Biol. 106:1–8.10.1016/j.fgb.2017.06.003Search in Google Scholar PubMed

Zhang, J., Presley, G.N., Hammel, K.E., Ryu, J.S., Menke, J.R., Figueroa, M., Hu, D., Orr, G., Schilling, J.S. (2016) Localizing gene regulation reveals a staggered wood decay mechanism for the brown rot fungus Postia placenta. Proc. Natl. Acad. Sci. U. S. A 113:10968–10973.10.1073/pnas.1608454113Search in Google Scholar PubMed PubMed Central

Zhu, Y., Zhuang, L., Goodell, B., Cao, J., Mahaney, J. (2016) Iron sequestration in brown-rot fungi by oxalate and the production of reactive oxygen species (ROS). Int. Biodeterior. Biodegradation 109:185–190.10.1016/j.ibiod.2016.01.023Search in Google Scholar