Home Implication of plant growth-promoting rhizobacteria of Bacillus spp. as biocontrol agents against wilt disease caused by Fusarium oxysporum Schlecht. in Vicia faba L.
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Implication of plant growth-promoting rhizobacteria of Bacillus spp. as biocontrol agents against wilt disease caused by Fusarium oxysporum Schlecht. in Vicia faba L.

  • Mostafa Mohamed El-Sersawy , Saad El-Din Hassan EMAIL logo , Abbas A. El-Ghamry , Amr Mahmoud Abd El-Gwad and Amr Fouda EMAIL logo
Published/Copyright: December 31, 2021

Abstract

Out of seven Fusarium spp. isolated from infected faba bean roots, two Fusarium oxysporum were selected and showed faba bean-wilt disease severity with percentages of 68% and 47% under greenhouse conditions. The F. oxysporum showed the highest wilt disease was selected to complete the current study. Three rhizobacterial strains were isolated and identified as Bacillus velezensis Vb1, B. paramycoides Vb3, and B. paramycoides Vb6. These strains showed the highest in-vitro antagonistic activity by the dual-culture method against selected F. oxysporum with inhibition percentages of 59±0.2, 46±0.3, and 52±0.3% for Vb1, Vb3, and Vb6, respectively. These rhizobacterial strains exhibit varied activity for nitrogen-fixing and phosphate-solubilizing. Moreover, these strains showed positive results for ammonia, HCN, and siderophores production. The phytohormones production (indole-3-acetic acid, ABA, benzyl, kinten, ziaten, and GA3) and secretion of various lytic enzymes were recorded by these strains with varying degrees. Under greenhouse conditions, the rhizobacterial strains Vb1, Vb3, Vb6, and their consortium can protect faba bean from wilt caused by F. oxysporum with percentages of 70, 60, 65, and 82%, respectively. Under field conditions, the inoculation with the rhizobacterial consortium (Vb1+Vb3+Vb6) significantly increases the growth performance of the F. oxysporum-infected faba bean plant and recorded the highest wilt protection (83.3%).

Introduction

Increased human populations combined with restricted agricultural land availability have a significant impact on food security. By 2050, the world’s population is predicted to exceed 9 billion people, resulting in a 70% rise in food demand [1]. Agricultural production has increased since the green revolution and farmers have relied on chemical fertilizers to ensure economic stability [2]. However, its deleterious effects on environmental ecology and human cannot be denied. Chemical fertilizers can aid plant growth, but do not play a role in improving soil properties [3]. They are responsible for degrading the soil by lowering its water holding capacity, rising salinity, and creating nutritional disparities [4]. Due to bioaccumulation and biomagnification of various harmful substances, their excessive usage pollutes the ecosystem [5, 6]. Natural radionuclides such as mercury, cadmium, and lead as well as various chemicals insecticides are absorbed by plants through the soil and eventually enter the food chain [7, 8]. Stomach cancer, vector-borne infections, and methemoglobinemia have all been linked to the accumulation of these toxins in newborns and humans [9]. Given all the negative impacts of chemical inputs and the growing public concern about them, alternative soil fertilization options are urgently needed. The global challenge is how can current agricultural practices meet the argent food demand without dependence on higher inputs of inorganic chemical fertilizers [10]. Microorganisms are an example of a viable option that can boost plant development and output while also preserving soil fertility. This is accomplished by taking advantage of plant-microbe interactions in the rhizosphere [11].

Plant growth-promoting rhizobacteria (PGPR) are an essential component of organic farming, they live in the rhizosphere and play a crucial role in soil productivity, plant growth, and disease suppression [12]. Pseudomonas, Klebsiella, Azoarcus, Enterobacter, Azospirillum, Azotobacter, Rhizobium, Bacillus, and Serratia are the most common described PGPR genera [11, 13]. Their diversity varies depending on soil type and circumstances, plant type, and nutrient accessibility in the rhizosphere [14]. Although various soil microorganisms are plant growth-promoting, not all strains belonging to a specific genus and species have equivalent hereditary makeup and metabolic competencies [15]. PGPRs are commercially made available in the form of microbial formulations called bio-fertilizers which can be applied directly onto seeds or introduced into the plant rhizosphere wherein they colonize and provide nutritive benefits to the host plant [16]. They are a safe alternative to conventional chemical fertilizers and provide sustainable agricultural production worldwide. Biofertilizer treatment results in improved plant growth in terms of seed germination, shoot and root development, increased biomass, and reduced disease incidence [17].

Faba bean (Vicia faba L.) is an important and useful legume that provides food and feed to humans all over the world. It is rich in high-quality protein, energy, fiber, and micronutrients especially Fe, Zn, and pro-vitamin A; and possesses compounds capable of preventing disease and promoting health. This legume is affected by various biotic and abiotic stresses which severely limited its yield. Considering the world’s growing population and the necessity for food crops that are best suited to humanity’s health, legumes will be in great demand, including common beans, mainly because of their nutritional value. In recent years, the area planted with beans has increased due to its various advantages, including profitability, rotational crop with cereals, atmospheric nitrogen-fixation, and high protein food. The factors that induce the inhibition of fungal invasion of plant roots are complex and poorly understood. A variety of agroecological factors such as the growth stage of the host plant, soil properties, and agronomic practices can influence root colonization by the fungus. Fusarium oxysporum, causing Fusarium wilt in many crops [18, 19].

Fusarium wilt caused by Fusarium oxysporum Schlechtend.Fr. f. sp. Phaseoli (Fop) is one of the most important bean diseases, being present in all crop production areas worldwide [20]. Fusarium wilt symptoms include foliar chlorosis, premature defoliation of lower leaves, red-brown necrosis of vascular tissue, wilting, and plant death [21]. Fop infects bean plants through wounds, natural openings, or intact roots, preferentially at the junctions of the lateral roots and the taproot [20]. During the infection, hyphae grow intracellularly in the root cortex until they reach the xylem vessels [20, 22]. The development of disease symptoms and degree of colonization in xylem vessels varied greatly among genotypes. Therefore, checking how far upward the pathogen is in the vessels from the roots might be useful to confirm the resistance of inoculated bean plants. This study focuses on the application of soil bacteria as a biocontrol agent against wilt disease caused by Fusarium oxysporum Schlecht. in Vicia faba L. To end with this goal, pathogenic soilborne fungus of Fusarium oxysporum was isolated from the naturally infected bean plants. Rhizospheric soil bacteria were isolated from the soil of healthy bean plants, bacteria that showed better plant growth-promoting capacity along with their antagonistic characteristics were then chosen to be applied as biocontrol agents against wilt disease caused by Fusarium oxysporum under greenhouse and field experiments.

Material and methods

Isolation of Fusarium pathogen from infected faba bean

The Fusarium oxysporum was isolated from roots of naturally infected faba bean plants showing symptoms of wilt disease. The infected plants were collected from the North Sinai governorate, Egypt. The infected roots were subjected to surface sterilization by 2% sodium hypochlorite for 2 min, rinsed twice with sterilized distilled water, and kept for drying under aseptic conditions. The sterilized roots were cut into small pieces (0.5 cm) and immersed on Petri dishes containing potato dextrose agar (PDA) media (containing g L−1: potato, 200; dextrose, 20; agar, 15; 1.0 L distilled H2O) and incubated for seven days at 25±2°C. The inoculated plates were examined for pure colonies and a single spore was sub-cultured onto new PDA plates.

Identification of Fusarium spp.

The Fusarium spp. cultured were identified based on cultural followed by morphological characteristics and confirmed by macro- and micro-conidial structure [23, 24, 25].

Pathogenicity test for F. oxysporum.

The pathogenicity test of two stains of F. oxysporum was achieved at EL-Qantra Sharq Experimental Station of Desert Research Center (D.R.C.), North Sinai Governorate, Egypt (31°00’21.6” N and 32°33’48.1” E) as greenhouse experiment. The pathogenic capabilities were tested using Maryot-2 faba bean cultivar collected from Agricultural Research Center, Giza, Egypt. The Fusarium inocula were prepared by inoculation of each fungal strain into potato dextrose broth media and incubated at 25±2°C for 15 days. The sandy-loam soil used in this experiment was autoclaved, added to sterilized pots (2 kg/ pot), and mixed thoroughly with fungal inoculation (2%). The physicochemical analysis of used soil is illustrated in Table 1. The seeds of collected faba bean were surface sterilized using 2% sodium hypochlorite for 4 min., washed in distilled water. Each pot was sown with three sterilized faba bean seeds. Pots without F. oxysporum inoculation and sown with sterilized faba bean seeds were running with the experiment as a control. The experiment was achieved in triplicates. The greenhouse condition was standardized throughout the experiment at a temperature between 18 to 24°C. The plants were irrigated as necessary and observed for diseases development.

Table 1

Physical and chemical characters of soil and organic fertilizer used in the current study.

Soil analysis Organic fertilizer analysis

Characters Results Characters Results
Physical characters Density (kg/m3) 670
Coarse sand (%) 56.58 Relative humidity 46.70
Fine Sand (%) 31.04 EC mmhos/cm at 25°C 13.56
Silt (%) 7.93 PH (1- 10 H2O) 8.40
Clay (%) 4.45 Organic matter 50.00
Soil texture Loamy sand Organic carbon 29.00
Chemical characters N (%) 1.68
pH 7.86 P (%) 0.59
EC (Ds/m) 0.29 K (%) 4.78
O.M. (%) 0.59 Fe (ppm) 3310
O.C. (%) 0.34 Zn (ppm) 94.80
T.N. (%) 0.3 Cu (ppm) 48.15
C/N ratio 11.3 Mn (ppm) 264
Soluble Cations (meq L−1)
Ca++ 4.9
Mg++ 2.2
Na+ 8.3
K+ 0.9
Soluble anions (meq L−1)
HCO3 3.1
Cl 6.7
SO4− − 5.7
  1. EC is electrical conductivity; O.M. denotes the organic matter percent; O.C. denotes the organic carbon; T.N denotes the total nitrogen; C/N denotes the carbon to nitrogen percent.

Disease severity assessment.

The wilting percentage caused by each F. oxysporum was assessed after 60 days from planting, based on leaf yellowing and/or root discoloration. The symptoms of typical wilt due to Fusarium infection are numerically assessed according to their severity in ranging between 0 to 5 as follows: (0) mean no wilt symptoms appeared; (1) mean approximately from 1 to 20% of vascular plant systems are light brown and the plant leaves appear as yellow; (2) mean approximately from 20 to 40% of vascular plant systems are light brown and the plant leaves appear as yellow; (3) mean approximately from 40 to 60% of vascular plant systems are dark brown and the plant leaves appear as yellow; (4) mean approximately from 60 to 80% of vascular plant systems are dark brown and the plant leaves appear as yellow; (5) mean approximately from 80 to 100% of the leaves are yellowish and the vascular systems are dark brown or completely dead plants.

The disease severity was calculated according to the following equation [26]:

(1) Diseaseseverity=Σ[(N0)+(N1)+(N2)+(N3)+(N4)+(N5)]5T

Where: (N) means the number of plants corresponding to the symptom grade, (0), (1), (2), (3), (4), and (5); (5T) mean the total number of plants (T) multiplied by maximum symptom grade (5).

Isolation of bacterial rhizospheres.

To isolate different bacterial species from rhizosphere soil of healthy faba bean plant, approximately 10 g of collected rhizosphere soil was mixed with 100 mL sterilized distilled water and stirred for 10 min. After that, the serial dilution was made up to 10−7 and inoculate 0.1 mL of final dilution into nutrient agar media. The inoculated plates were incubated at 35 ± 2°C for 24 h. The different morphological bacterial colony was re-streaked onto new nutrient agar plates to confirm the purity. The purified isolates are inoculated onto nutrient agar slant and kept in a refrigerator at 4°C for further study.

Selection of the most potent bacterial isolates

The most potent bacterial isolates were selected based on their highest efficacy to inhibit the growth of Fusarium oxysporum by using the in-vitro dual culture assay method [27]. Each rhizospheric bacterial isolate was inoculated at three equidistant points on the PDA plate and incubated at 35 ± 2°C for 24 h. At the end of the incubation period, a disk (5 mm) of a 7-days-old culture of F. oxysporum was put in the center of bacterial inoculated PDA plates. The control was designated as a PDA plate containing a disk of F. oxysporum without bacterial inoculation and running with the experiment under the same conditions. The plates were incubated at 28 ± 2°C for five days. The fungal growth inhibition percentage was calculated using the following equation:

(2) Growthinhibition(%)=R1R2R1×100

Where R1 is the radial growth of F. oxysporum in absence of bacterial isolate (control), while R2 is the radial growth of F. oxysporum in presence of bacterial isolate. The experiment was achieved in triplicate for each bacterial isolate.

Identification of the most potent bacterial isolates.

The most potent bacterial isolates designated as Vb1, Vb3, and Vb6 were identified based on sequencing and amplification of the 16S rRNA gene. The genomic DNA was extracted according to the modified method [28]. Briefly, a separate bacterial colony was picked up by a sterile toothpick and suspended in 50 µL of sterilized deionized water. The cell suspension was put in a water bath for 10 min at 97°C, after that, the suspension was centrifuged for 10 min at 15000 rpm to recover the upper layer that contains the DNA. The intensity of DNA in the collected layer was calculated by measuring its absorbance at 260 nm by UV-spectrophotometer. A bacterial universal primers 27f (5’-AGAGTTTGATCCTGGCTCAG-3’) and 1492r (5’-GGTTACCTTGTTACGACTT-3’) were used to PCR amplification of the 16S rDNA fragment. The PCR tube containing PCR buffer (1 x), MgCl2 (0.5 mM), Tag DNA polymerase (2.5 U, QIAGEN Inc.), Deoxynucleoside triphosphate (dNTP, 0.25 mM), universal primer (0.5 µM), and bacterial DNA (5 ng). The PCR cycling conditions were 94 °C for three minutes, followed by 30 cycles at 94°C for 30 seconds, 55°C for 30 seconds, 72°C for 60 seconds, and final extension at 72°C for ten minutes. The forward and reverse sequencing for PCR products was achieved using Applied Biosystem’s 3730xl DNA Analyzer technology at Sigma company, Cairo, Egypt.

The obtained sequences were analyzed using BLAST as compared with those deposited in the GeneBank database. Multiple sequence alignment was performed using ClustalX 1.8 software package and a phylogenetic tree was constructed by the neighbor-joining method using MEGA (Version 6.1) software. The confidence level of each branch (1000 repeats) was tested by bootstrap analysis. The sequences obtained in the current study were deposited at GeneBank under accession numbers LC571587, LC571588, LC 571589 for strains Vb1, Vb3, and Vb6 respectably.

Characterization of the most potent rhizospheric bacterial strains as plant growth-promoting

Nitrogen fixation

A- Qualitative screening

The primary screening to investigate the efficacy of the most potent rhizospheric bacterial strains to nitrogen-fixing was achieved through streaking on nitrogen-free malate medium (containing g L−1: yeast extract, 0.1; KH2PO4, 0.4; NaCl, 0.1; MgSO4·7H2O, 0.2; FeCl3, 0.1; Na2.MoO4.2H2O, 0.2; biotin, traces; 1.0 L distilled H2O) supplemented with bromothymol blue as an indicator [29]. The inoculated plates were incubated at 35 ± 2°C for 48 h. The producing blue color around bacterial growth is designated as a positive nitrogen fixer. The results were recorded as positive or negative based on blue color formation.

B- Quantitative bioassay using (acetylene reduction assay)

Nitrogenase activity was determined separately by the method of acetylene reduction technique given by [30]. A number of tubes (3) containing medium were inoculated with single colonies from each different isolates and incubated for 72h at 30°C. After that, the tubes were closed with sub seal, ten percent of pure acetylene (C2H2) was injected into the tubes which were incubated for 4 h, and then 0.1 of gas samples were withdrawn for the determination of C2H4 formed using Hewlett-Packard 5890 gas chromatography Series 2 plus, fit with two flames; Ionization and electron capture detectors, electron pressure control system (EPC) and Hp-Plot AL2O3 capillary column (cross-linked AL2O3) (50 m x 0.53 mm* 15.0 mm film thickness) and attached with HP computer unit and printer. The applied temperatures were 170°C, 120°C, and 200°C for injector, column, and detector, respectively. The carrier gas (nitrogen) at flow rate 10 ml/min, hydrogen and air for flame ionization detector were at a rate of 30 and 300 ml/min, respectively. Standard pure ethylene was diluted with air and acetylene and mixed in special containers to obtain concentrations ranging from 100 to 1000 ppm; this was used as a reference for calculating the ethylene concentration in the sample. Results were calculated as ethylene produced/ml liquid culture/day.

Phosphate solubilization

A- Qualitative screening

The efficacy of rhizospheric bacterial strains to solubilizing phosphate was primary screening according to Jasim et al. [31] using Pikovskaya agar media (containing g L−1: glucose, 10; Ca3(PO4)2, 5; (NH4)2SO4, 0.5; NaCl, 0.2; MgSO4·7H2O, 0.1; KCl, 0.2; FeSO4·7H2O, 0.002; yeast extract, 0,5; MnSO4·2H2O, 0.002; agar, 15; 1.0 L distilled H2O). Briefly, the bacterial strain was inoculated as spot on the center of Pikovskaya agar plate and incubated at 35 ± 2°C for 48 h. The results were recorded as the diameter of the clear zone formed around each bacterial growth. The experiment was achieved in triplicates.

B- Quantitative screening

The quantitative phosphate solubilization was analyzed by measuring pH values and P concentration at interval times (2 – 10 days). Briefly, Pikovskaya’s broth medium supplemented with 0.5% Ca3(PO4)2 was inoculated with rhizospheric bacterial strain and incubated at 35 ± 2°C for 10 days on a rotary shaker at 180 rpm. Five ml samples were taken daily and centrifuged at 10,000 rpm for 10 min. The phosphomolybdate method was used for the determination of available soluble phosphate in the culture supernatant using a spectrophotometer (Jenway 6305 UV) measuring at O.D. 700 nm. The concentration of P was calculated from the slope of the standard curve of P. Also, the pH of the broth medium was measured daily with a digital pH meter [32].

Ammonia production

The ability of rhizospheric bacterial strains to produce ammonia was assessed in peptone water broth. Each bacterial strain was inoculated into tubes containing 10 mL peptone water and incubated at 35 ± 2˚C for 48 h. At the end of the incubation period, approximately, 0.5 mL of Nessler’s reagent was added to culture broth media. The development of yellow color was recorded as +, ++, +++ based on the color intensity [33].

Extracellular Enzymatic Activities

The productions of extracellular enzymes (amylase, cellulase, protease, and catalase) of the rhizospheric bacterial strains were investigated by inoculating the isolates in a mineral salt (MS) agar media (containing g L−1: NaNO3, 5; KH2PO4, 1; K2HPO4, 2; MgSO4.7H2O, 0.5; KCl, 0.1; CaCl2, 0.01; FeSO4.7H2O, 0.02; agar, 15; distilled H2O, 1L) supplemented with specific additives, depending on the enzyme being tested. The MS agar media without bacterial inoculation was running with the experiment as a negative control. After incubation at 35 ± 2˚C for 24 h, specific reagents were added and the size of the clear zone (mm) surrounding the bacterial colony was measured, indicating extracellular enzymatic activities. All assays were performed in triplicates. For amylolytic and cellulolytic activities, the bacterial strains were inoculated onto MS agar medium supplemented with 1% soluble starch and 1% carboxy-methylcellulose (CMC) respectively. After the incubation period, the plates were flooded with 1% iodine. For protease activity, the MS agar medium containing 1% gelatin was used to determine the proteolytic activity of the bacteria. After incubation period, gelatin degradation was checked using acidic mercuric chloride as an indicator [34, 35].

For catalase activity, the pure bacterial colony from young culture (18–24h.) was put into a glass slide and mixed with a few drops of 3% H2O2. The appearance of oxygen bubbles indicates the presence of catalase activity [36].

Siderophore production

Secretion of siderophore was qualitatively analyzed using king’s B agar medium containing chrome azurol S as an indicator dye, Fe3+ solution, and hexadecyltrimethylammonium bromide (HDTMA). The fresh bacterial culture was spotted onto a king’s B agar plate and incubated at 28°C for 72 h. The appearance of an orange halo around the bacterial growth indicates a positive siderophore production [37].

HCN production

The purified rhizospheric bacterial isolate was tested for HCN production through inoculation on king’s B agar medium amended with glycine [38]. After that, a Whatman No. 1 filter paper was soaked in a solution of (2% sodium carbonate mixed with 0.05% picric acid solution) and put on the lid of inoculated king’s B petri dish. The plates were sealed with parafilm and incubated at 28 ± 2°C for 48 h. The change in the color of the filter paper from deep yellow to reddish-brown color indicates a positive result for HCN production.

IAA production

A- Qualitative screening.

The most potent rhizospheric bacterial isolates were screened for qualitative IAA production. Briefly, the bacterial isolates are inoculated into nutrient broth media amended with different concentrations of tryptophan (0, 1, 2, and 5 mg mL−1) and incubated at 35± 2°C for 15 days. At the end of the incubation period, the inoculated culture was centrifuged at 3000 rpm for 30 min. After that, two mL of the obtained supernatant was mixed with 2 drops of orthophosphoric acid and 4 mL of Salkowski’s reagent (300 mL concentrated Sulfuric acid: 500 mL distilled water: 15 mL 0.5 M FeCl3). The development of pink color indicates successful IAA production. The intensity of the formed color was measured at 530 nm using a spectrophotometer (T60 UV-Visible spectrophotometer) [39]. The amount of IAA was estimated via a standard IAA graph to detect the best tryptophan concentration for IAA production.

B- Quantitative assay

For quantitative IAA assay, the rhizospheric bacterial isolates were inoculated in nutrient broth media supplemented with 5 mg mL−1 of tryptophan (the best concentration of tryptophan for IAA production based on qualitative screening) and incubated at 35 ± 2°C for 14 days. Approximately two mL of inoculated culture was withdrawn after the 2nd day up to the 14th day with 2 days interval and centrifuged at 3000 rpm for 30 minutes. One mL of the supernatant was mixed with 1 drop of orthophosphoric acid and 2 mL of Salkowski’s reagent. The intensity of development of pink color was measured at 530 nm using a spectrophotometer [39]. The amount of IAA produced was estimated by the standard IAA graph to detect the best days for IAA production.

Detection of other phytohormones

The three most potent rhizospheric bacterial isolates were screened for their ability to produce other phytohormones including gibberellic acids (GA3), abscisic acid (ABA), benzyl, kinten, and ziaten. The bacterial isolates were grown in Ashby’s medium (containing g L−1: mannitol, 10; sucrose, 5; K2HPO4, 0.5; NaCl, 0.2; MgSO4·7H2O, 0.2; CaCO3, 0.5; CaSO4, 0.1; FeCl3, 0.001; MnSO4·2H2O, 0.001; Na2. MoO4.2H2O, 0.002; 1.0 L distilled H2O) and incubated at 30±2°C for 7 days. Then the ability of the growing cultures to produce phytohormones is well determined quantitatively by high-performance liquid chromatography (HPLC) as previously reported [40].

Biocontrol of Fusarium wilt in Vicia faba plant using rhizosphere bacterial isolates

Greenhouse experiment.

A. Experimental Design.

The pot experiment using a completely randomized design and three replicates for each treatment was achieved to investigate the efficacy of rhizospheric bacterial isolates (Vb1, Vb3, and Vb6) to reduce the incidences of Fusarium wilt in faba bean plants under greenhouse conditions. The soil used in the greenhouse experiment was collected from EL-Qantra Sharq Experimental Station of Desert Research Center (D.R.C.), North Sinai Governorate, Egypt (Table 1). The Maryot-2 faba bean cultivar and their surface sterilization were achieved as mentioned in the pathogenicity test.

B. Bacterial inoculations

The three bacterial species were inoculated into nutrient broth media separately or in a consortium and incubated for 24 h at 35 ± 2°C. The sterilized faba bean seeds were subjected to pre-germination to check their health and divided into five groups, each group containing four similar germination seeds were selected. Four groups were soaked in 100 ml of bacterial culture (6 ×109 cell/ml) that were grown individually or in a consortium, whereas the fifth group of pre-germinated seeds was soaked in the un-inoculated bacterial culture as a control. All soaked pre-germinated seeds are incubated for 6 h at 35 ± 2°C and sown in pots filled with 2 kg of sterilized soil. Each pot receives 3 pre-germinated seeds. The most pathogenic F. oxysporum was inoculated onto 100 ml of PD broth media and incubated at 25±2°C for 15 days. At the end of the incubation period, the inoculated PD broth media was centrifuged, and the obtained pellets were resuspended in 100 ml distilled water (adjusted at 5 ×105 conidia/ml) which was used as an inoculum for soil after one week of planting. The plants were irrigated as necessary and daily observed to check the infection. Disease severity percentages were estimated after 60 days post-sowing [41]. The percentages of reduction in the incidence of Fusarium wilt were calculated as follow:

(3) Reductionpercentages(%)=ABA×100

Where A is disease incidence of positive control, B is disease incidence of treatment.

Field experiment.

A. Experimental Design.

The field trials were conducted at the EL-Qantra Sharq Experimental Station of Desert Research Center (D.R.C.), North Sinai Governorate, Egypt. The physical and chemical analysis of soil was represented in Table 1. The field experimental design was achieved using a split-plot design, in which the distance between rows was 50 cm, while the distance between different plants on the same raw was 30 cm and the distance between different treatments was 1.0 m. The experiment was carried out using 6 replicates for each treatment with an area of 3 m for every plot. The drip irrigation was used as an irrigation system during the experiment. The organic fertilization was added for the first time before planting and mixed well with the soil. The chemical and physical composition of organic fertilizer is shown in Table 1. On the other hand, inorganic fertilization was added (full doses) as recommended by the Ministry of Agriculture and Land Reclamation, Cairo, Egypt. The inorganic fertilizer consists of ammonium sulfate (20.5% N) as nitrogen fertilizer, calcium superphosphate (15.5% P2O5) as phosphorus fertilizer, and potassium sulfate (48% K2O) as potassium fertilizer. The inorganic fertilization was added at three periods as follows: immediately after planting, after 30 days, and after 40 days of planting.

B- Inoculation, planting, and samples analysis

Before the experiment, the faba bean seeds were subjected to surface sterilization and pre-germination to select the seeds with the same radical length. The three bacterial isolates (Vb1, Vb3, and Vb6) were inoculated into nutrient broth media and incubated at 35±2°C for 24 h. At the end of the incubation period, the selected seeds were incubated with bacterial suspension (109 CFU mL−1) for 6 h which was picked up and planted into the soil. After one week of planting, approximately 20 ml of Fusarium oxysporum suspension (5 ×105 conidia/ml) was added beside the seedling roots. The different treatments were conducted as follows: (1) seeds without any treatment (healthy control), (2) seeds planting into soil infected with F. oxysporum (infected control), (3) seeds treated with Vb1 and planting in soil infested with F. oxysporum, (4) seeds treated with Vb3 and planting in soil infested with F. oxysporum, (5) seeds treated with Vb6 and planting in soil infested with F. oxysporum, (6) seeds treated with the bacterial consortium (Vb1 + Vb3) and planting in soil infested with F. oxysporum, (7) seeds treated with the bacterial consortium (Vb1 + Vb6) and planting in soil infested with F. oxysporum, (8) seeds treated with the bacterial consortium (Vb3 + Vb6) and planting in soil infested with F. oxysporum, (9) seeds treated with the bacterial consortium (Vb1 + Vb3 +Vb6) and planting in soil infested with F. oxysporum.

After 60 days of sowing, the plant height (cm), number of pods per plant, fresh weight, and dry weight of plant (g) were also recorded. Moreover, the disease root rot/wilt severity and reduction percentages were recorded as mentioned above after 60 days of planting [41].

Statical analysis

The layout of the experiment was a split-plot design. The experiment included three replicates for each treatment. Data were subjected to statistical analysis by a statistical package SPSS v17. The mean difference comparison between the treatments was analyzed by analysis of variance (ANOVA) and subsequently by Turkey’s HSD (honestly significant difference) test at p < 0.05.

Result and Discussions

Isolation and identification of pathogenic Fusarium spp.

Faba bean (Vicia faba L.) is considered one of the most important legume crops, grown overall in the world to be used as human food and animal feed [42]. The significant losses in faba bean yield can be related to fungal infections which cause root rot, damping-off, and wilt diseases [43]. The most common fungal species that destroy faba bean growth and hence cause significant yield losses are Fusarium species [44]. Therefore, seven Fusarium spp. were isolated from the naturally infected root of faba bean collected from Sinai governorate, Egypt. The obtained Fusarium spp. were identified based on morphological and cultural characteristics as Fusarium proliferatum, Fusarium subglutinans, Rhizoctonia solani, Fusarium solani (two isolates), and Fusarium oxysporum (two isolates).

Fusarium oxysporum is considered the main phytopathogen that causes Fusarium wilt and can be remain to exist in the soil for several years without a main host; therefore, it is difficult to control the disease caused by Fusarium [45]. In the current study, the pathogenic severity for two F. oxysporum strains to cause wilt disease in faba bean was estimated under greenhouse experiment. Data analysis showed that the percentages of disease severity due to infection with two strains of F. oxysporum were 68% and 47% as compared with control. Therefore, we select the strain that causes the highest Fusarium wilt for further tests.

Isolation and selection of the most potent rhizospheric bacterial isolates

The interactions between rhizospheric bacterial species and the root system of plants have a positive impact on plant health, yield, and soil quality. These positive impacts can be attributed to the high efficacy of rhizospheric bacterial strains and secondary metabolites to increase the phosphate solubilization, nitrogen fixation, increase the availability of nutrients, ameliorate the biotic and abiotic stresses, biological control of phytopathogens, enhance the plant immunity through induced systematic resistance (ISR) [46]. In the current study, out of 23 bacterial species isolated from rhizosphere soil of healthy faba bean plant, seven bacterial isolates exhibited the efficacy to inhibit the growth of F. oxysporum using in-vitro dual culture assay with varying degrees ranging between 39.06 ± 0.3 and 59.1±0.2. Among seven rhizospheric bacterial isolates, three isolates designated as Vb1, Vb3, and Vb6 showed the highest efficacy to inhibit F. oxysporum growth with reduction percentages of 59.1±0.2, 46.4±0.3, and 52.5±0.3, respectively (Fig. 1). The in-vitro dual culture is a common assay method for preliminary investigation, in which the antagonistic activity was detected through measuring the inhibition percentage of radial mycelial growth towards the inoculated bacterial strains [47]. Consistent with our study, out of 35 rhizospheric bacterial isolates, five isolates exhibit F. oxysporum mycelial growth inhibition with varying percentages, and the bacterial isolate BA5 was the promising rhizospheric bacterial isolate to inhibit the mycelial growth with a percent of 58.3% [48]. Also, out of 100 microbial isolates obtained from rhizosphere soil samples, the bacterial isolate NJN-6 which was identified as Bacillus amyloliquefaciens showed the highest inhibition percentage towards F. oxysporum [49].

Figure 1 Antagonistic activity of the most potent bacterial isolates Vb1, Vb3, and Vb6 against highest pathogenic F. oxysporum strain by in-vitro dual culture assay. Bars with the different letters are significantly different (p≤ 0.05). Error bars indicate means ± SE (n = 3).
Figure 1

Antagonistic activity of the most potent bacterial isolates Vb1, Vb3, and Vb6 against highest pathogenic F. oxysporum strain by in-vitro dual culture assay. Bars with the different letters are significantly different (p≤ 0.05). Error bars indicate means ± SE (n = 3).

Identification of the most potent bacterial isolates

The three bacterial isolates designated as Vb1, Vb3, and Vb6 that exhibit high antagonistic activity with F. oxysporum were undergone identification based on amplification and sequencing of the 16S rRNA gene. The sequence analysis showed that the isolates Vb1 have a similarity percentage of 99.7 with Bacillus velezensis, whereas the isolates Vb3, and Vb6 have similarity percentages of 99.9 and 99.8% with two isolates of Bacillus paramycoides, respectively (Fig. 2). Similarly, the five rhizospheric bacterial isolates that showed high efficacy against Fusarium wilt, root rot, and crown diseases in tomatoes were identified using 16S rRNA as Acinetobacter calcoaceticus (AcDB3), B. amyloliquefaciens (BaMA26), B. siamensis (BsiDA2), B. subtilis (BsTA16), and B. thuringiensis (BtMB9) [50]. Accordingly, the Bacillus spp. are predominant rhizospheric bacterial species used to biocontrol of phytopathogenic fungi [47, 49, 50]. This phenomenon can be attributed to their different secondary metabolites and rapid growth which enables them to high integrate into biocontrol studies [51]. Recently, the cell immobilization of B. velezensis NH-1 was used to biocontrol of Fusarium wilt caused by F. oxysporum in cucumber [52]. Although the B. velezensis is a common bacterial species used in biocontrol, this is the first report for using it and B. paramycoides for biocontrol of Fusarium wilt caused by F. oxysporum in faba bean.

Figure 2 Phylogenetic analysis of 16sr RNA sequences of the bacterial isolates with the sequences retrieved from NCBI. The analysis was conducted with MEGA 7 using the neighbor-joining method with bootstrap value (1000 replicates).
Figure 2

Phylogenetic analysis of 16sr RNA sequences of the bacterial isolates with the sequences retrieved from NCBI. The analysis was conducted with MEGA 7 using the neighbor-joining method with bootstrap value (1000 replicates).

Characterization of the rhizospheric bacterial strains as plant growth-promoting

The antagonistic activity of rhizospheric bacterial species towards phytopathogenic fungi can be attributed to their plant growth-promoting traits. Among these traits, the efficacy of rhizospheric bacteria to producing hydrolytic enzymes, nutrient competitions, nitrogen fixations, siderophores production, phosphate solubilization, phytohormones production, and ammonia production [53]. The preliminary screening of three selected rhizospheric bacteria showed their efficacy to fixed nitrogen by producing blue color around the bacterial colony grown on nitrogen-free malate medium. The quantification nitrogen-fixing assay was achieved through the acetylene reduction method. Data on solid media (qualitative assay) are compatible with those recorded from liquid media (quantitative assay) after being analyzed by gas chromatography. Data analysis showed that the highest nitrogen-fixing was recorded for bacterial isolate Vb1 with the ethylene production value of 391.4±1.5 n mole C2H4/ml/24h, followed by Vb3 and Vb6 with values of 351.8±1.2 and 258.7±1.01 n mole C2H4/ml/24h (Table 2). Similarly, the nitrogen-fixing efficacy of rhizospheric bacterial species associated with Calligonum polygonoides and Lasiurus sindicus was assessed qualitatively via color change and quantitatively via acetylene reduction assay [29].

Table 2

Characterization of selected rhizosphere bacterial strains Vb1, Vb3, and Vb6 as plant growth-promoting.

Test Rhizosphere bacterial isolate
Vb1 Vb3 Vb6
Nitrogen fixation (n mole C2H4/ml/24 h.) 391.44±1.46a 351.84±1.17a 258.72±1.01b
Phosphorus solubilization (clear zone (mm)) 1.3±0.02d 9.4±0.05a 9.9±0.12a
Ammonia + ++ +
Amylase (mm) 14±0.0a 0.00 5.33±0.88b
Cellulase (mm) 36±0.0a 28.33±3.84b 30±1.53b
Protease (mm) 13±2.08a 17.67±2.40a 17.67±0.88a
Catalase + +
Siderophore + + +
HCN + ++ ++
  1. Values within the same row with different letters are significantly different (p ≤ 0.05), values are means ± SD (n = 3), −, +, ++= negative, low, strong.

Another mechanisms utilized by rhizospheric microbes to enhance plant growth and then compete with phytopathogens are phosphate solubilization and ammonia production [54]. Among macronutrients required by a high amount for enhancement of plant growth is phosphorus ion, which exists in most cases as an insoluble form. Rhizospheric bacteria have the ability to convert phosphorus from insoluble to soluble form through different mechanisms such as the production of enzymes and/or organic acids [55]. In the current study, the appearance of a clear zone around the bacterial growth on Pikovskaya agar media indicates their success in phosphate solubilizing. The diameter of clear zones was 1.3±0.02, 9.4±0.05, and 9.9±0.12 mm for Vb1, Vb3, and Vb6, respectively (Table 2) which correlated with the amount of liberated phosphate. The quantitative assay is depending on the amount of liberated organic acid detected by the phosphomolybdate method. The results showed that the highest phosphate solubilizing was achieved by bacterial isolate Vb6 followed by Vb3 and Vb1. Also, the difference between the amount of liberated phosphate recorded by bacterial isolates Vb6 and Vb3 are non-significant which recorded 91.5±1.2 µg ml−1 and 91.1±1.3 µg ml−1 respectively at 2nd days and reached 152.2±1.3 µg ml−1 and 151.8±1.3 µg ml−1 at tenth days (Fig. 3). The lowest amount of phosphate solubilization is recorded by bacterial strain Vb1 which was 41.82±0.75 µg ml−1 after 2nd days and decreased to 37.73±0.62 µg ml−1 after tenth days as compared with control which recorded 25.64±0.59 µg ml−1 and 27.31±0.49 µg ml−1 after second and tenth days, respectively (Fig. 3). According to the obtained data, the quantitative assay is compatible with those reported by the qualitative assay (formed clear zone). The production of low molecular weight organic acid is considered the main mechanism for phosphate solubilization by different bacterial species [56].

Figure 3 The amount of P-liberated by rhizospheric bacterial strains Vb1, Vb3, and Vb6 in liquid media.
Figure 3

The amount of P-liberated by rhizospheric bacterial strains Vb1, Vb3, and Vb6 in liquid media.

The obtained data highlighted that all rhizospheric bacterial isolates have the ability to produce ammonia with varying degrees according to color intensity after adding Nessler’s reagent (Table 2). The highest intensity for brownish color was reported for isolate Vb3 followed by Vb1 and Vb6. Ammonia production enhanced plant growth by the synthesis of biomolecules containing nitrogen. Also, ammonia can increase the root and shoot length, enhance the fresh weight of the plants, and increase the efficacy of the plant against phytopathogens attacks [57].

The extracellular hydrolytic enzymes secreted by rhizospheric microbes are important for the decomposition of different polymers such as chitin, cellulase, starch, and lignin which ultimately to mineralization to beneficial minerals such as P, N, and S [58]. The secretion of these hydrolytic enzymes by different rhizosphere microbes has a critical role in the suppression of phytopathogenic fungi through the degradation of their cell wall [59, 60]. For example, hydrolytic amylase, lipase, cellulase, pectinase, and protease enzyme are released by rhizospheric bacterial species such as Bacillus, Pseudomonas, and Enterobacter are showed inhibitory action against phytopathogenic fungi [61]. In the current study, the rhizosphere bacterial strains B. velezensis Vb1, B. paramycoides Vb3, and B. paramycoides Vb6 possess the efficacy to secret amylase, cellulase, protease, and catalase except the bacterial strains Vb3 and Vb1 lack the efficacy to secrete amylase and catalase (Table 2). Data analysis showed that the highest clear zone formed around bacterial strain was recorded for cellulase enzymes with values of 36±0.0, 28.3±3.8, and 30±1.53 mm. Catalase enzymes promote plant growth by the indirect mechanism through scavenging the free radicals released because of biotic and abiotic stresses [36].

Siderophores have a critical role in the biocontrol of soilborne fungi as reported previously [62]. The inhibitory effect of siderophores against phytopathogenic fungi due to converting Fe3+ (inorganic form) to Fe2+ (organic form), and hence making it available for plant and unavailable for phytopathogens [63]. The selected bacterial strains Vb1, Vb3, and Vb6 are recorded as siderophores producers through the appearance of an orange halo around the bacterial growth. Similarly, Bacillus siamensis, B. subtilis, and B. amyloliquefaciens are characterized by their efficacy in producing siderophores which help in the biocontrol of Fusarium wilt caused by F. oxysporum [50]. Also, the efficacy of Pseudomonas aeruginosa JAS-25 to colonizing the roots, secretion of antibiotics, and antagonistic activity against pathogenic fungi can be related to their potentiality to siderophores production [64]. Hydrogen cyanide (HCN) is defined as a volatile secondary metabolite secreted by various rhizosphere bacterial species. It is characterized by its efficacy in suppression of soilborne pathogenic fungi through blocking the electron transport system and hence disrupting the supply of the cell by energy which ultimately to cell death [65]. Data showed that all selected rhizosphere bacterial strains have the ability to produce HCN with different degrees due to the color change of filter paper from deep yellow to reddish-brown (Table 2). Recently, various rhizosphere bacterial species are recorded as positive for HCN production such as Aeromonas, Pseudomonas, Bacillus, Alcaligenes, and Rhizobium [66].

The ability of rhizosphere bacterial strains to produce auxin and cytokinin is a promising tool to study the profound effect of these strains on plant growth [67]. Indole-3-acetic acid (IAA) is considered the main auxins synthesized by plants and has a profound role in leaf formation, root initiation, embryo development, phototropism, fruit development, geotropism, abscission. It has a positive impact on the root length, increases root branches, root laterals, and root hair that facilitate the nutrient uptake from the surrounding environment [68]. The efficacy of three rhizospheric bacterial strains Vb1, Vb3, and Vb6 to produce IAA were screened qualitatively at broth media in the absence and presence of L-tryptophan (0, 1, 2, and 5 mg ml−1) as a precursor for IAA after 15 days. Data represented in Fig. (4A) showed that the maximum IAA production in absence of L-tryptophan was achieved for bacterial isolate Vb6 with a value of 5.2±1.03 µg ml−1 and this concentration was increased up to 67.9±3.3 µg ml−1 at 5 mg ml−1 L-tryptophan. Moreover, the IAA production by bacterial strains Vb1 and Vb3 was increased from 2.1±0.2 and 2.8±0.4 µg ml−1 in absence of L-tryptophan to 81.3±1.9 and 58.2±4.3 µg ml−1 in presence of 5 mg ml−1 tryptophan respectively (Fig. 4A). Compatible with our study, the IAA production by B. siamensis was increased in liquid media supplemented with L-tryptophan as compared with those without L-tryptophan, and the highest IAA production was achieved at 250 µg ml−1 [69].

Figure 4 Phytohormones production by three rhizospheric bacterial species Vb1, Vb3, and Vb6. A) denote the qualitative production of IAA at different concentrations of tryptophan (0, 1, 2, and 5 mg ml−1); B) denote the quantitative production of IAA at different interval times in presence of 5 mg ml−1 tryptophan, C) denote the production of ABA, Benzyl, Kinten, and Ziaten phytohormones detected by HPLC analysis, D) denote the production of GA3 detected by HPLC. Bars with the different letters are significantly different (p≤ 0.05). Error bars indicate means ± SE (n = 3).
Figure 4

Phytohormones production by three rhizospheric bacterial species Vb1, Vb3, and Vb6. A) denote the qualitative production of IAA at different concentrations of tryptophan (0, 1, 2, and 5 mg ml−1); B) denote the quantitative production of IAA at different interval times in presence of 5 mg ml−1 tryptophan, C) denote the production of ABA, Benzyl, Kinten, and Ziaten phytohormones detected by HPLC analysis, D) denote the production of GA3 detected by HPLC. Bars with the different letters are significantly different (p≤ 0.05). Error bars indicate means ± SE (n = 3).

According to qualitative assay, the concentration of 5 mg ml−1 L-tryptophan is the best for higher IAA production and hence it was selected to investigate the quantitative IAA assay. Analysis of variance showed that the maximum IAA concentration was recorded at 10, 14, and 14 days for rhizospheric bacterial strains Vb1, Vb3, and Vb6 with values of 61.4±3.7, 25.9±1.4, and 59.6±0.5 µg ml−1, respectively.

Furthermore, the rhizospheric bacterial strains were quantitative screening for their efficacy to produce various phytohormones using HPLC analysis. Data analysis showed that the successful rhizospheric bacterial species Vb1, Vb3, and Vb6 to produce ABA, Benzyl, Kinten, Ziaten, and GA3 with values of (0.04±0.01, 0.03±0.01, and 0.02±0.01 mg/100 ml), (1.53±0.1, 0.23±0.05, and 0.22±0.03 mg/100 ml), (0.34±0.01, 0.96±0.01, and 0.27±0.01 mg/100 ml), (0.54±0.01, 0.67±0.01, and 0.38±0.01 mg/100 ml), and (14.45±1.6, 13.88±0.9, and 7.80±0.8 mg/100 ml), respectively (Fig. 4 B and C). The ABA has an important role in improving plant adaptation under various stresses and regulating plant growth [70]. Also, Gibberellic acid is another phytohormone that has a critical role in ameliorating different stress, directly affects plant growth, plant yield, nitrogen metabolism, and mineral nutrition [71]. The efficacy of rhizosphere bacteria strains to secrete different phytohormones are mentioned in different published studies [70, 72, 73]. Based on the above plant growth-promoting traits of three rhizosphere bacterial strains can be use of these strains as bioinoculant to increase plant growth and hence increase the tolerance of a plant to phytopathogens infection.

Biocontrol of Fusarium wilt in Vicia faba L. plant using rhizosphere bacterial isolates.

Greenhouse experiment.

The efficacy of plant growth-promoting rhizobacteria Vb1, Vb3, and Vb6 to reduce the wilt disease severity caused by F. oxysporum was investigated under greenhouse conditions. Data analysis showed that the treatment of Vicia faba (faba bean) seeds with rhizosphere strains have the efficacy to protect the plant from Fusarium wilt with percentages of 70.0, 60.13, and 65.2% for Vb1, Vb3, and Vb6 respectively (Table 3). Interestingly, the treatment of seeds with bacterial consortium decreases the Fusarium wilt disease severity with a percentage of 82% (Table 3). Similarly, the rhizospheric bacteria strain Bacillus thuringiensis strain BtMB9 and Acinetobacter calcoaceticus strain AcDB3 have the efficacy to decrease the Fusarium wilt disease severity in tomato, whereas the bacterial combination can highly decrease disease severity than separate one [50]. The obtained results indicated that the rhizosphere soil of the same plant is the proper source to isolate bacterial species used in antagonists [74]. Although some investigators reported that the antagonistic bacterial species used in the control of phytopathogens can come from rhizosphere soil of different plants [75]. Previous studies reported the high efficacy of Bacillus spp. to be used in biocontrol of Fusarium wilt disease caused by F. oxysporum under greenhouse conditions [50, 76]. Furthermore, Bacillus siamensis has the efficacy to decrease the disease severity of tobacco brown spots caused by Alternaria alternata under greenhouse conditions [77]. Also, rhizosphere Bacillus amyloliquefaciens was used to significantly decrease the Fusarium wilt disease severity caused by F. oxysporum under greenhouse experiment [78]. To the best of our knowledge, this is the first report that uses the three rhizosphere bacterial strains B. velezensis and B. paramycoides to control Fusarium wilt caused by F. oxysporum under greenhouse conditions.

Table 3

Effect of rhizospheric bacterial strains Vb1, Vb3, and Vb6 on disease severity and protection of faba bean plants infected with Fusarium oxysporum under greenhouse conditions.

Treatments Fusarium wilt severity Protection (%)
Un infected faba bean plant (control) 0.00e 100a
B. velezensis Vb1 + F. oxysporum 30.0±2.0c 70.00c
B. paramycoides Vb3 + F. oxysporum 39.9±1.8a 60.13e
B. paramycoides Vb6 + F. oxysporum 34.8±3.1b 65.20d
Mix (Vb1 + Vb3 + Vb6) + F. oxysporum 18.0±2.0d 82b
  1. Values within the same column with different letters are significantly different (p ≤ 0.05), values are means ± SD (n = 3).

Field experiment

Data represented in Table 4 showed the potency of B. velezensis Vb1, B. paramycoides Vb3, and B. paramycoides Vb6 to improve F. oxysporum-infected faba bean plants either separately or in a consortium. Inoculation of faba bean seeds with rhizospheric bacterial strains and planting into F. oxysporum-infected soil causes a significant increase in plant heights, the number of pods/plant, and fresh and dry weight as compared with those planting into infected soil without bacterial inoculation. For instance, inoculation with separate bacterial species enhance plant height with percentages of 21.3% – 24.3%, whereas the bacterial consortium highly improves faba bean plant height with percentages of 28.3% – 48.3% and the highest significant value was recorded for V-mix treatment (Vb1+Vb3+Vb6) as compared with the infected plant (plant sowing in infected soil in absence of bacterial strains). Moreover, the number of pods/plants were highly reduced in the infected plant (12.3±1.5) as compared with a healthy plant (21.0±1.0). The presence of plant growth-promoting rhizobacterial strains causes a significant increase in the number of pods as compared with healthy plants and the highest number was recorded for the bacterial consortium.

Table 4

The morphological characteristics and wilt disease severity of faba bean plant due to treatment with three rhizospheric bacterial strains Vb1, Vb3, and Vb6 (individually or in a consortium) against F. oxysporum.

Treatment Plant height (cm) Pods/plant Fresh weight (g) Dry weight (g) Wilt severity (%) Protection (%)
Healthy plant 83.3±2.1f 21.0±1.0d 51.7±1.2e 18.0±2.6d 0.0±0.0g 100a
Infected plant 64.7±1.5g 12.3±1.5e 38.7+2.1f 13.3+1.5e 71.7±2.1a 28.3g
Vb1+ F. oxysporum 88.7±0.6de 23.0±1.0c 57.3+2.1d 22.0+3.0c 32.3±0.6d 67.7d
Vb3 + F. oxysporum 89.0±1.0d 23.7±2.1c 57.7+2.1d 22.7+2.1c 41.7+1.2b 58.3f
Vb6 + F. oxysporum 86.0±1.0ef 22.0±2.6cd 56.3+3.1d 21.0+3.0c 37.0+1.7c 63.0e
(Vb1+Vb3) + F. oxysporum 93.0±2.6c 24.7±1.5c 60.3+2.5c 23.3+3.2b 29.0+1.0d 71c
(Vb1+Vb6) + F. oxysporum 96.7±1.2b 26.3±1.5b 65.7+1.5b 24.3+2.5b 26.3+0.6e 73.7c
(Vb3+Vb6) + F. oxysporum 97.3±1.5b 28.7±1.6b 66.7+3.1b 26.3+2.1b 31.3+1.2d 68.7d
(V-mix) + F. oxysporum 113.0±2.0a 33.3±2.1a 75.7+1.5a 33.7+1.5a 16.7+1.2f 83.3b
  1. Healthy plant meaning planting of faba bean in soil without rhizobacterial strains and F. oxysporum; Infected plant meaning planting of faba bean in F. oxysporum-infected soil in absence of rhizobacterial strains; Vb1 is B. velezensis; Vb3 is B. paramycoides, and Vb6 is B. paramycoides. Values within the same row with different letters are significantly different (p ≤ 0.05), values are means ± SD (n = 3).

On the other hand, the fresh weight and dry weight of healthy and infected faba bean plants after 60 days of sowing were (51.7±1.2 g and 18.0±2.6 g) and (38.7+2.1 g and 13.3+1.5 g), respectively. The presence of F. oxysporum in absence of bacterial rhizospheric strains has a negative impact on all morphological characteristics of faba bean. Inoculation of plants with different bacterial strains Vb1, Vb3, and Vb6 has been significantly improving fresh and dry weight in presence of fungus. For instance, the presence of B. velezensis Vb1 improves the fresh weight and dry weight with values of 18.6% and 8.7% respectively, whereas the bacterial consortium (V-mix) increases the fresh weight and dry weight with percentages of 37% and 20.4% respectively in presence of F. oxysporum strain (Table 4). The obtained data are in harmony with those reported that the rhizobacterial strains Rhizobium sp., Bacillus pumilus, and Pseudomonas alcaligenes have the efficacy to improve the number of pods, dry weight, fresh weight, and plant height of lentil in presence of Fusarium oxysporum causing wilt disease [79]. Similarly, rhizobacterial strain Bacillus sp. SJ-5 was used to biocontrol disease caused by Fusarium oxysporum & Rhizoctonia solani in soybean plants [80].

The current study showed that the three rhizospheric Bacillus spp. have the potency to improve the growth performance of the F. oxysporum-infected faba bean plant. This phenomenon can be attributed to antagonistic activity between rhizospheric bacteria and pathogens, producing lytic enzymes, secretion of bioactive inhibitory compounds, or competition between bacteria and pathogenic fungi on essential nutrients [81, 82]. Bacillus spp. are considered the most common rhizospheric bacterial strains used to decrease the wilting disease caused by F. oxysporum in various plants [83, 84]. The various published studies reported that the Bacillus spp. have various suppressive mechanisms including producing volatile substances, induction of systematic resistance, stimulating plant growth, and aggressive plant roots colonization [13, 79].

The planting of faba bean in infected soil with F. oxysporum caused 71.7 ± 2.1 wilt severity after 60 days of planting (Table 4). The inoculation of faba bean seeds with plant growth-promoting rhizospheres causes a significant decrease in wilt disease. For example, the presence of bacteria consortium V-mix (Vb1+Vb3+Vb6) has the efficacy to protect faba bean plant from wilt with percentages of 83.3%, followed by bacterial treatment Vb1+Vb6 that reduce the wilt with a percentage of 73.7%. Not only rhizobacterial consortium can reduce the wilt disease, but also separate species have the ability. For instance, the presence of B. velezensis Vb1 can reduce the wilt disease with a percentage of 67.7% as compared with infected plants followed by B. paramycoides Vb6 and B. paramycoides Vb3 (Table 4). Un-compatible with our study, Akköprü and Demir reported that the treatment with single rhizobacterial species was more effective than Glomus intraradices as mycorrhizal fungi or consortium between mycorrhizae and rhizosphere bacteria to biocontrol of F. oxysporum f. sp. lycopersici in tomato plant [85]. The obtained results are in harmony with those recorded by Khalil and co-authors, who reported that the rhizospheric bacterial strains B. siamensis BsiDA2 and B. subtilis BsTA16 have significantly reduced wilt disease in tomatoes caused by Fusarium oxysporum spp. lycopersici [50]. The rhizospheric Bacillus spp. are used by various researchers to biocontrol wilt disease caused by F. oxysporum in various plants under greenhouse and field conditions [74, 81]. In the current study, the activity of Bacillus spp. to reduce the wilt disease can be attributed to producing siderophores, HCN, hydrolytic enzymes, and ammonia which help in suppressive phytopathogens.

Conclusion

In the current study, seven Fusarium spp. were isolated from the infected roots of the Vicia faba L. plant collected from Sinai governorate, Egypt. Two F. oxysporum strains that caused the highest disease severity of Fusarium wilt were selected. Then, three rhizobacterial species of Bacillus which showed the highest plant growth-promoting properties and antagonistic activities were isolated from the rhizospheric soil of the healthy faba bean plant. Biocontrol of Fusarium wilt in bean plants using the selected rhizobacterial species of Bacillus under the greenhouse and field experiments revealed the efficacy of plant growth-promoting rhizobacteria to reduce the wilt disease severity caused by F. oxysporum. Species of rhizobacteria being associated with the healthy plant roots, which promote plant growth and induce the plant defense against microbial pathogens should be subjected to further investigation.

  1. Author Contribution: Saad El-Din Hassan and Amr Fouda: Conceptualization, Data curing, Formal analysis, Investigation, methodology, Project administration, Resources, Software, Validation, Visualization, Writing-original draft, Writing -review and editing; Mostafa Mohamed El-Sersawy: Data curing, Formal analysis, methodology, Resources, Software, Validation, Visualization, Writing-original draft; Amr Mahmoud Abd El-Gwad and Abbas Ahmed El-Ghamry: Conceptualization, Data curing, Investigation, Resources, Validation, Visualization, Writing-original draft.

  2. Conflict of Interest: Authors state no conflict of interest.

  3. Data Availability Statement: The datasets generated during and/or analysed during the current study are available from the corresponding author on reasonable request.

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Received: 2021-11-30
Accepted: 2021-12-20
Published Online: 2021-12-31

© 2021 Mostafa Mohamed El-Sersawy et al., published by De Gruyter

This work is licensed under the Creative Commons Attribution 4.0 International License.

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