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Chapter fourteen. Replication of Data Analyses: Provenance in R
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Chapters in this book
- Frontmatter i
- Contents vii
- Foreword xi
- Preface xvii
- Acknowledgments xxi
-
Part one. Introduction replication across disciplines
- Chapter one. Toward a Taxonomy of Scientific Replication 3
- Chapter two. Borges on Replication and Concept Formation 23
- Chapter three. The Historical Emergence of Replication reifying: geography through repeated surveys 37
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Part two. replication in biology: overviews and case studies
- The Value of Natural History Collections 53
- Chapter four. Natural History Collections as Dynamic Research Archives 55
- Chapter five. Looking to the Past to Plan for the Future: Using natural history collections as historical baselines 64
- Repeatable Monitoring and Observations 81
- Chapter six. Monitoring: Repeated sampling for understanding nature 83
- Chapter seven. Monitoring the State of Nature in Israel 94
- Chapter eight. Creating Coherent Time Series through Repeated Measurements in a Marine Monitoring Program 112
- Replication and Experiments 123
- Chapter nine. Contingent Repeatability of Experiments in Time and Space 125
- Chapter ten. The Influence of Variation among Replicates on Repeatability 139
- Meta-analysis and the Need for Repeatability 155
- Chapter eleven. Replication and Repetition in Systematic Reviews and Meta–analyses in Medicine 157
- Chapter twelve. Clinical Heterogeneity in Multiple Trials of the Antimicrobial Treatment of Cholera 163
- The Role of Metadata in Creating Reproducible Research 177
- Chapter thirteen. Reliable Metadata and the Creation of Trustworthy, Reproducible, and Re-usable Data Sets 179
- Chapter fourteen. Replication of Data Analyses: Provenance in R 195
-
Part three. Integration and synthesis
- Chapter fifteen. Turning Oranges into Apples Using detectability correction and bias heuristics to compare imperfectly repeated observations 215
- Chapter sixteen. Dissecting and Reconstructing Time and Space for Replicable Biological Research 233
- Chapter seventeen. Best Practices for Creating Replicable Research 250
- Epilogue: A chorus’s dance with replication 265
- Bibliography 271
- Contributors 305
- Index 311
Chapters in this book
- Frontmatter i
- Contents vii
- Foreword xi
- Preface xvii
- Acknowledgments xxi
-
Part one. Introduction replication across disciplines
- Chapter one. Toward a Taxonomy of Scientific Replication 3
- Chapter two. Borges on Replication and Concept Formation 23
- Chapter three. The Historical Emergence of Replication reifying: geography through repeated surveys 37
-
Part two. replication in biology: overviews and case studies
- The Value of Natural History Collections 53
- Chapter four. Natural History Collections as Dynamic Research Archives 55
- Chapter five. Looking to the Past to Plan for the Future: Using natural history collections as historical baselines 64
- Repeatable Monitoring and Observations 81
- Chapter six. Monitoring: Repeated sampling for understanding nature 83
- Chapter seven. Monitoring the State of Nature in Israel 94
- Chapter eight. Creating Coherent Time Series through Repeated Measurements in a Marine Monitoring Program 112
- Replication and Experiments 123
- Chapter nine. Contingent Repeatability of Experiments in Time and Space 125
- Chapter ten. The Influence of Variation among Replicates on Repeatability 139
- Meta-analysis and the Need for Repeatability 155
- Chapter eleven. Replication and Repetition in Systematic Reviews and Meta–analyses in Medicine 157
- Chapter twelve. Clinical Heterogeneity in Multiple Trials of the Antimicrobial Treatment of Cholera 163
- The Role of Metadata in Creating Reproducible Research 177
- Chapter thirteen. Reliable Metadata and the Creation of Trustworthy, Reproducible, and Re-usable Data Sets 179
- Chapter fourteen. Replication of Data Analyses: Provenance in R 195
-
Part three. Integration and synthesis
- Chapter fifteen. Turning Oranges into Apples Using detectability correction and bias heuristics to compare imperfectly repeated observations 215
- Chapter sixteen. Dissecting and Reconstructing Time and Space for Replicable Biological Research 233
- Chapter seventeen. Best Practices for Creating Replicable Research 250
- Epilogue: A chorus’s dance with replication 265
- Bibliography 271
- Contributors 305
- Index 311