Home Medicine MHC Class I related chain A (MICA), Human Leukocyte Antigen (HLA)-DRB1, HLA-DQB1 genotypes in Turkish patients with ulcerative colitis
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MHC Class I related chain A (MICA), Human Leukocyte Antigen (HLA)-DRB1, HLA-DQB1 genotypes in Turkish patients with ulcerative colitis

  • Cigdem Kekik Cinar ORCID logo EMAIL logo , Kadir Demir , Sonay Temurhan , Filiz Akyuz , Binnur Pinarbasi and Fatma Savran Oguz
Published/Copyright: June 29, 2020

Abstract

Objectives

We aimed to determine Human Leukocyte Antigen (HLA)-DRB1, DQB1, and MHC Class I related chain A (MICA) genotypes in patients with ulcerative colitis.

Methods

HLA-DRB1, HLA-DQB1, MICA genotyping of patient (n:85) and controls (n:100) were performed by PCR-SSO Luminex (One Lambda genotyping kit).

Results

We found significantly higher DRB1*01 (p:0.022, OR:0.23, CI:0.06–0.8) and MICA*0002/20/55 (p:0.03, OR:0.53, CI:0.29–0.93) alleles in control group whereas DRB1*14 (p:0.04, OR:2.25, CI:1–5.08), DRB1*15 (p:<0.0001, OR:4.54, CI:2.09–9.88) and MICA*0004 (p:0.01, OR:2.84, CI:1.2–6.7) alleles were higher in patient group.

Conclusions

The present study will inform the MICA and HLA genotypes about the protective (DRB1*01, MICA*0002/20/55) or susceptible (DRB1*14, DRB1*15, MICA*0004) alleles of the disease and helps the literature on Turkish patients with ulcerative colitis.

Öz

Amaç

Ülseratif kolit, kronik enflamatuvar bir bağırsak hastalığıdır. HLA alelleri, enflamatuvar bağırsak hastalıklarının patogenezinde önemli bir rol oynar. HLA-DRB1*09, DRB1*1502, DRB1*0103 ve DRB1*13 alellerinin ülseratif kolit ile ilişkili olduğu bildirilirken HLA-DRB1*04 ve DRB1*08 alellerinin koruyucu olduğu bildirilmiştir. Bakteriyel antijenler kolon lümeninde MICA ekspresyonunu indükler ve MICA geni ülseratif kolit gelişimi için önemlidir. MICA*06 ve MICA*007 alelleri Ülseratif kolit ile ilişkilendirilmiştir. Ülseratif kolitli hastalarda HLA-DRB1, DQB1, MICA genotiplerini belirlemeyi amaçladık.

Gereç ve yöntemler

Hasta (n: 85) ve kontrol grubunun (n: 100) HLA-DRB1, HLA-DQB1, MICA genotiplemesi PCR-SSO Lumineks (One Lambda genotipleme kiti) yöntemiyle gerçekleştirildi.

Bulgular

DRB1*01 (p: 0.022, OR: 0.23, CI: 0.06–0.8) ve MICA*0002/20/55 (p: 0.03, OR: 0.53, CI: 0.29-0.93) allelleri kontrol grubunda anlamlı olarak daha yüksek iken, DRB1*14 (p: 0.04, OR: 2.25, CI: 1–5.08), DRB1*15 (p: <0.0001,OR: 4.54, CI: 2.09–9.88) ve MICA*0004 (p: 0.01, OR: 2.84, CI: 1.2–6.7) alelleri hasta grubunda daha yüksekti.

Sonuç

Bu çalışma, Ülseratif kolitli Türk hastalarda MICA ve HLA genotiplerini hastalığın koruyucu (DRB1*01, MICA*0002/20/55) veya duyarlı (DRB1*14, DRB1*15, MICA*0004) alelleri hakkında bilgilendirecek ve literatüre yardımcı olacaktır.

Anahtar kelimeler: HLA-DQB1; HLA-DRB1; MICA; Ülseratif Kolit

Introduction

Ulcerative colitis (UC) is an inflammation of intestine which holds the right proximal colonic mucosa from the rectum and is characterized by remissions and exacerbations. The disease is systemic with various extraintestinal involvements (skin, lung, eye, liver, renal, hematologic, and immunologic findings) [1], [2].The definitive diagnosis is confirmed by interventional tests such as colonoscopy and biopsy [3].Several factors (environmental and genetic) associated with the pathogenesis of the disease have been identified their effects on UC is not clear yet [4], [5], [6].

Human Leukocyte Antigen (HLA)-DRB1 and DQB1 antigens in Major histocompatibility complex (MHC) class II genes are involved in peptide presentation to T cell receptors. Inflammatory bowel diseases can lead to the formation of autoreactive T cells [7]. HLA alleles take part in a significant role in the pathogenesis of the inflammatory intestinal diseases. HLA-DRB1*09, DRB1*15:02, DRB1*01:03, DRB1*07:01 and DRB1*13 alleles were related to UC, and the HLA-DRB1*04, DRB1*08, and DQB1*03:01 alleles were reported as effective prophylactics [8], [9], [10], [11], [12], [13], [14], [15], [16].A rare allele HLA-DRB1 *01:03 was associated with patients resistant to medical therapy and/or requiring colectomy [9].

MHC Class I related chain A (MICA) is recognized by αβ CD8 T, γδ T lymphocytes, and natural killer (NK) cells via the NK cell receptor NKG2D [17], [18], [19]. MICA molecules regulate the protective responses of γδ1 T cells and are increased expression in the gastrointestinal epithelium during cellular stress conditions such as bacterial and viral infections [20], [21], [22]. MICA polymorphism affects the binding of NKG2D [23]. MIC expression increase in intestinal epithelial cells was observed in the active phase of celiac disease [24]. Bacterial antigens induce the expression of MICA in the colonic lumen, and MICA gene is important in the development of ulcerative colitis [22], [25]. MICA A6, MICA*007 (A4), MICA A5, and MICA A5.1 alleles were associated with ulcerative colitis [26], [27], [28], [29]. Kamoun et al. [30]showed that no MICA allele significantly increased in IBD groups compared to controls. In ulcerative colitis, A6 was found to be associated with involvement other than the intestine and MICA-A5 was related with the age of onset.

We aimed to determine the HLA-DRB1, -DQB1, and MICA genotypes in patients with UC.

Materials and methods

Patients and control group

Our study included 85 patients (F/M: 42/43, mean age: 40.1 years (19–62 years) and 100 healthy individuals (F/M: 35/65, mean age: 38.3 years (21–57 years)(Table 1). The number of samples was calculated using the site https://clincalc.com/stats/SampleSize.aspx. For a difference of 20% (for the difference to be significant) between the two groups (patient and control), a minimum of 75 individuals was required in each group with 0.05 alpha error and 80% power. The patient, and control groups were included in the study after the informed consent forms were obtained. The project was approved by the Ethical Committee in Istanbul Medical Faculty (2007/526).

Table 1:

Demographic and clinical characteristics of Ulcerative colitis (UC)* patients.

VariablesPatients (n:85)
Gender
Male43 (50.6%)
Female42 (49.4%)
Age44.1 ± 9.9
Range19–79
Family History4 (4%)
Extra involvement19 (22.4%)
Involvement of column
Pancolitis46 (54.1%)
Left-sided colitis20 (23.5%)
Distal colitis19 (22.4%)

*UC, Ulcerative Colitis.

The diagnosis of UC was made gastrointestinal endoscopic examination with the histopathologic confirmation. Categories of disease extent include (i) Distal (within 18 cm of the anal verge, distal to the rectosigmoid junction), (ii) left-sided colitis (extending from the sigmoid to the splenic flexure), and (iii) Pancolitis-extensive colitis (beyond the splenic flexure).Patients above 18 years of age, whose diagnosis was confirmed by biopsy, were included. Definitive diagnosis was not made and patients under 18 were not included in the study.

Method

The DNAs of the patients, and the controls were extracted from the whole peripheral blood with ethylenediaminetetraacetic acid (EDTA) using the dodecyltrimethylammonium bromide/cetyltrimethylammonium bromide (DTAB/CTAB) method [31]. DNA samples were measured by spectrophotometer. Samples with concentration 35–40 ng/mL and purity 260/280=1.8–2 were included in the study. HLA-DRB1, HLA-DQB1, and MICA genotyping were performed using the Luminex genotyping kits (One Lambda, Canoga Park, CA) [32]. Negative and positive control DNAs were used in the amplification and hybridization phase. Amplified DNAs were analyzed by gel electrophoresis.

Statistical analyses

Frequencies of allele and genotype between patient and control group were compared using the Fisher’s exact test and Pearson chi-square test. The Bonferroni method was used for correct the p values. A corrected p-value less than 0.05 were considered significant. HLA-DRB1 and DQB1 haplotypes were calculated using the Arlequin version 3.5.2.2.

Results

Eighty-five patients and 100 healthy individuals were included in this study and there are no significant differences between the ages and genders of groups.

HLA-DRB1 genotyping results according to the most frequent allele was DRB1*11 in the patient (21%), and control (30%) groups. The comparison of the patients and control group showed significantly higher DRB1*01 (p:0.022. OR:0.23. CI:0.06–0.8) in the control group and DRB1*14 (p:0.04. OR:2.25. CI:1–5.08). DRB1*15 (p:<0.0001.OR:4.54. CI:2.09–9.88) alleles were higher in the patient group. DRB1*01 (Pc: 0.26), and DRB1*14 (Pc: 0.52) lost their significance with the Bonferroni test (Table 2).

Table 2:

Frequency of HLA-DRB1 and DQB1 types in patients with UC in comparision with healthy controls.

Patients (n=85)Healthy controls (n=100)OddsRatio

(CI 95%)
p-ValuePc*
nFreq.%NFreq.%
HLA
DRB1*0131.761470.23 (0.06–0.8)p=0.0220.26
DRB1*0384.712110.5p>0.05
DRB1*042816.52814p>0.05
DRB1*071710126p>0.05
DRB1*0831.7621p>0.05
DRB1*0910.5900p>0.05
DRB1*1042.3552.5p>0.05
DRB1*113621.185929.5p>0.05
DRB1*120052.5p>0.05
DRB1*13105.882211p>0.05
DRB1*141810.591052.25 (1–5.08)p=0.040.52
DRB1*153017.6594.54.54 (2.09–9.88)p<0.0001<0.005
DRB1*16127.06136.5p>0.05
DQB1*021911.73417p>0.05
DQB1*036437.059739.5p>0.05
DQB1*0484.7100p>0.05
DQB1*054325.34014.5p>0.05
DQB1*063621.182914.5p>0.05

*Pc, Corrected p value.

HLA-DQB1 genotyping results according to the most frequent allele was DQB1*03 in the patient (38%), and control (47%) groups. There was no statistically significant result (Table 2).

MICA genotyping results according to the most frequent alleles were MICA*002 (A9) (22%) in the control, and MICA*002 (A9) (16%), MICA*009 (A6) (16%) in the patient groups. MICA*004 (A6) (p:0.0055. OR:2.9. CI:1.3–6.4) alleles were higher in the patient group. The significance was lost by the Bonferroni test (Table 3).

Table 3:

Frequency of MHC Class I related chain A (MICA)* types in patients with ulcerative colitis in comparison with healthy controls.

Patients (n=85)Healthy controls(n=100)OddsRatio

(CI 95%)
p-ValuePc**
nFreq.%nFreq.%
MICA (EX 5 microsatellite alleles)
MICA*002 (A9)2715.884422p>0.05
MICA*004 (A6)2313.541052.9 (1.3–6.4)p=0.0055p>0.05
MICA*006 (A6)52.9463p>0.05
MICA*007 (A4)42.3521p>0.05
MICA*008 (A5.1)2615.293819p>0.05
MICA*009 (A6)2715.884221p>0.05
MICA*010 (A5)10.5900p>0.05
MICA*011 (A6)31.7642p>0.05
MICA*012 (A4)42.3500p>0.05
MICA*015 (A9)10.5900p>0.05
MICA*016 (A5)2514.712713.5p>0.05
MICA*017 (A9)31.7621p>0.05
MICA*018 (A4)116.47189p>0.05
MICA*024 (A5.1)0021p>0.05
MICA*027 (A5)84.7131.5p>0.05
MICA*028 (A5.1)10.5900p>0.05
MICA*0290010.5p>0.05
MICA*05710.5910.5p>0.05

*MICA, MHC Class I related chain A; **Pc, Corrected p value.

Forty-six patients (54.1%) developed pancolitis, 20 (23.5%) patients developed left-sided colitis, and 19 (22.4%) patients developed distal colitis. MICA*006 (A6) allele was significantly higher in patients with distal colitis however, the inclusion of HLA-DRB1, and DQB1 alleles showed no statistical significance. The significance was lost by the Bonferroni test.

Extraintestinal manifestations developed in 19 patients. No statistically significant difference was detected between extra involvement, and HLA-DRB1, DQB1, MICA alleles.

The most frequent haplotypes were HLA-DRB1*11-DQB1*03 in patients (19%) and control (25%) group. There was no statistically significant.

Discussion

The multifactorial pathogenesis of UC has not yet been fully explained. We aimed to examine HLA-DRB1, HLA-DQB1, and MICA alleles to shed light on the pathogenesis of UC. Being the first study in Turkey, our research will contribute to the literature by providing the results of the Turkish population.

HLA-DRB1 and DQB1 antigens in MHC class II gene can lead to the formation of autoreactive T cells that cause inflammatory bowel diseases.

HLA-DRB1*04 allele was defined as protective for UC on Northern Europeans, Japanese and Iranian populations [9], [14]. Gao F et al. [11] reported that HLA-DRB1*08 allele in Uyghur patients and HLA-DRB1*03 allele in Han patients were negatively associated with ulcerative colitis [33]. DR13 was found to be protective in a previous study with 59 Turkish patients [8]. In the present study we found HLA-DRB1*01 allele low in patients with UC. In healthy controls the frequencies of DRB1*11, DRB1*04 and DRB1*13 of HLA-DRB1 types were found as 30, 14, and 11%, respectively.

Uyar FA et al. [8]showed that HLA-DRB1*1502 was associated allele in Turkish patients with UC. Myung SJ et al. [10] and Ahmad T et al. [9] observed the association of HLA-DR2 and HLADRB1*1502 with UC. Gao F et al. [11] reported that HLA-DRB1*13 allele in Uyghur patients was positively associated with UC. In the present study, we indicated that HLA-DRB1*14 and DRB1*15 alleles higher in patients with UC. Only DRB1*15 allele was identified in the limit of significance by the Bonferroni test. Consistent with the previous studies, DRB1*15 allele is a risk factor for the disease in our society.

HLA-DRB1*0103 allele has been associated with the disease, disease severity and extraintestinal manifestations in various studies [9], [12], [13], [15], [16]. We obtained no results associated with HLA-DRB1*0103 and illness severity and extra intestinal manifestations in our study.

In previous studies, DQB1*03:01 allele was defined as protective. However, no relationship was found between DQB1*03:01, and disease in the present study [9], [14].

The MIC molecules expressed in the gastrointestinal epithelium are known to significantly increase in cellular stress situations such as bacterial or viral infections [21], [22].

Lucas D et al. [34] reported that MICA*008 (A5.1), *002 (A9), *004 (A6), *001 (A4), *009 (A6), and *016 (A5) alleles were significantly higher in healthy controls. In this study, the frequencies of *002 (A9), *009 (A6), and *008 (A5.1) alleles were found to be 22, 21 and 19%, respectively, in healthy controls.

Some studies found MICA A4 in 340 Spanish patients with UC and MICA*129 Val/Met polymorphism alleles as a protector [29], [35]. However, we found no protective alleles in Turkish patients diagnosed with UC.

Sugimura K et al. [26] showed that MICA A6 allele in 83 Japanese patients was positively associated with UC. Previous studies showed that MICA*007 (A4) allele to be associated with UC in United Kingdom and Spanish patients [29], [35]. In the present study, although lost after Bonferroni test, MICA*004 (A6) allele was significantly higher in the patient group. As a result, we suggest that MICA*004 (A6) allele may provide susceptibility to UC in Turkish patients.

Kamoun et al. [30] showed that MICA-A6 was associated with involvement other than the intestine and MICA-A5 was associated with advanced age in UC patients. The study of Fdez-Morera JL et al. [27] in 121 Spanish patients with UC demonstrated that MICA-A5.1 allele was found to increase in patients with distal colitis and MICA-A5 allele was found to increase in patients with the extensive forms. However, no associated alleles were detected in this study.

The limitation of our study was the number of patients. We suggest that the significance lost with the Bonferroni Test will disappear with the increase of the number of patients.

In conclusion, the present study suggests that HLA-DRB1*01 may demonstrate a protective effect against the disease, and HLA-DRB1*15 is associated with UC. Considering the involvement of the disease, the MICA*006 is associated with distal colitis patients. We suggest that the HLA, and MICA genes associated with UC susceptibility can be used as biomarkers in the diagnosis of the disease. The results of this study are the first studies to help the literature on Turkish patients with UC.


Corresponding author: Cigdem Kekik Cinar, Istanbul University Istanbul Faculty of Medicine, Medical Biology, Istanbul, Turkey,

Funding source: Istanbul University Scientific Research Projects Unit

Award Identifier / Grant number: 583

Acknowledgments

This study was supported by Istanbul University Scientific Research Projects Unit (Project no: 583).

  1. Author contributions: All authors have accepted responsibility for the entire content of this manuscript and approved its submission.

  2. Research funding: Istanbul University Scientific Research Project Unit (Award number: 583).

  3. Informed consent: Informed consent was obtained from all individuals included in this study.

  4. Competing interests: The authors whose names are listed declared no conflicting interests.

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Received: 2019-08-08
Accepted: 2020-04-17
Published Online: 2020-06-29

© 2020 Walter de Gruyter GmbH, Berlin/Boston

Articles in the same Issue

  1. Frontmatter
  2. Review Article
  3. Newly developed diagnostic methods for SARS-CoV-2 detection
  4. Short Communication
  5. Effect of hemolysis on prealbumin assay
  6. Research Articles
  7. BioVar: an online biological variation analysis tool
  8. High dose ascorbic acid treatment in COVID-19 patients raised some problems in clinical chemistry testing
  9. Immunoassay biomarkers of first and second trimesters: a comparison between pregnant Syrian refugees and Turkish women
  10. Association of maternal serum trace elements with newborn screening-thyroid stimulating hormone
  11. PIK3CA and TP53 MUTATIONS and SALL4, PTEN and PIK3R1 GENE EXPRESSION LEVELS in BREAST CANCER
  12. Evaluation of E2F3 and survivin expression in peripheral blood as potential diagnostic markers of prostate cancer
  13. Age, gender and season dependent 25(OH)D levels in children and adults living in Istanbul
  14. Original Article
  15. Fractional excretion of magnesium as an early indicator of renal tubular damage in normotensive diabetic nephropathy
  16. Research Articles
  17. Diagnostic value of laboratory results in children with acute appendicitis
  18. Evaluation of thiol disulphide levels in patients with pulmonary embolism
  19. Relationship between renal tubulointerstitial fibrosis and serum prolidase enzyme activity
  20. Comparison of test results obtained from lithium heparin gel tubes and serum gel tubes
  21. MHC Class I related chain A (MICA), Human Leukocyte Antigen (HLA)-DRB1, HLA-DQB1 genotypes in Turkish patients with ulcerative colitis
  22. An overview of procalcitonin in Crimean-Congo hemorrhagic fever: clinical diagnosis, follow-up, prognosis and survival rates
  23. Comparison of different equations for estimation of low-density lipoprotein (LDL) – cholesterol
  24. Case-Report
  25. A rare case of fructose-1,6-bisphosphatase deficiency: a delayed diagnosis story
  26. Research Articles
  27. Atypical cells in sysmex UN automated urine particle analyzer: a case report and pitfalls for future studies
  28. Investigation of the relationship cellular and physiological degeneration in the mandible with AQP1 and AQP3 membrane proteins
  29. In vitro assessment of food-derived-glucose bioaccessibility and bioavailability in bicameral cell culture system
  30. Letter to the Editor
  31. The weighting factor of exponentially weighted moving average chart
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