Phylogeography analysis and molecular evolution patterns of the nematode parasite Heligmosomum mixtum based on mitochondrial DNA sequences

References

Asakawa M. 1987. Genus Heligmosomoides Hall, 1916 (Heligmosomoidae: Nematoda) from the Japanese wood mice, Apodemus spp. III. The life-cycle of Heligmosomoides kurilensis kobayashii (Nadtochii, 1966) in ICR mice and preliminary experimental infection to jirds. Journal of the College of Dairying, 12, 131-140Search in Google Scholar

Avise J.C. 2000. Phylogeography. The History and Formation of Species. Harvard University Press, Cambridge, MA Ballard J.W.O., Whitlock M.C. 2004. The incomplete natural history of mitochondria. Molecular Ecology, 13, 729-744. DOI: 10. 1046/j.1365-294X.2003.02063.x Barrett L.G., Thrall P.H., Search in Google Scholar

Burdon J.J., Linde C.C. 2008. Life history determines genetic structure and evolutionary potential of host-parasite interactions. Trends in Ecology and Evolution, 23, 678-685. DOI: 10.1016/j.tree.2008.06.017Search in Google Scholar

Bauchau V., Chaline J. 1987. Variabilite de la troisieme molaire inferieure de Clethrionomys glareolus (Arvicolidae, Rodentia) et sa signification evolutive. Mammalia, 51, 587-598Search in Google Scholar

Biek R., Drummond A.J., Poss M. 2006. A virus reveals population structure and recent demographic history of its carnivore host. Science, 311, 538-541. DOI: 10.1126/science.1121360Search in Google Scholar

Buckley T.R., Simon C., Chambers G.K. 2001. Phylogeography of the New Zealand cicada Maoricicada campbelli based on mitochondrial DNA sequences: ancient clades associated with Cenozoic environmental change. Evolution, 55, 1395-1407. DOI: 10.1111/j.0014-3820.2001.tb00661.x Search in Google Scholar

Burban C., Petit R.J., 2003. Phylogeography of maritime pine inferred with organelle markers having contrasted inheritance. Molecular Ecology, 12, 1487-1495. DOI: 10.1046/j.1365-294X.2003.01817.x Search in Google Scholar

Cordy J.M. 1991. Paleoecology of the late glacial and early postglacial of Belgium and neighbouring areas. In: The late glacial in Northwest Europe: human Adaptation and environmental Change at the End of the Pleistocene (eds Barton N, Robers AJ, Roe DA), pp.40-47. Search in Google Scholar

Council for British Archaeology, London Criscione C.D., Poulin R., Blouin M.S. 2005. Molecular ecology of parasites: elucidating ecological and microevolutionary processes. Molecular Ecology, 14, 2247-2257. DOI: 10.1111/ j.1365-294X.2005.02587.x Search in Google Scholar

Deffontaine V., Libois R., Kotlik P., Sommer R., Nieberding C., Paradis E., Searle J.B., Michaux J.R. 2005. Beyond the Mediterranean peninsulas: evidence of central European glacial refugia for a temperate forest mammal species, the bank vole (Clethrionomys glareolus). Molecular Ecology, 14, 1727-1739. DOI: 10.1111/j.1365-294X.2005.02506.x Search in Google Scholar

Deffonatine V., Ledevin R., Fontaine M.C., Quere J-P., Renaud S., Libois R., Michaux J.R. 2009. A relict bank vole lineage highlights the biogeographic history of the Pyrenean region in Europe. Molecular Ecology, 18, 2489-2502. DOI: 10.1111/ j.1365-294X.2009.04162.x Search in Google Scholar

Dybdahl M.F., Lively C.M. 1996. The geography of co-evolution: comparative population structures for a snail and its nematode parasite. Evolution, 50, 2264-2275Search in Google Scholar

Emerson B.C., Oromi P., Hewitt G.M. 2000. Tracking colonization and diversification of insect lineages on islands: mitochondrial DNA phylogeography of Tarphius canariensis Coleoptera: Colydidae) on the Canary Islands. Proceedings of the Royal Society of London. Series B, Biological Sciences, 267, 2199-2205Search in Google Scholar

Eswaran V., Harpending H., Roger A.R. 2005. Genomics refutes and exclusively African origin of humans. Journal of Human Evolution, 49, 1-18. DOI: 10.1016/j.jhevol Ewens W.J. 1972. The sampling theory of selective neutral alleles. Theoretical Population Biology, 3, 87-112. DOI: 10.1016/ 0040-5809(72)90035-4Search in Google Scholar

Excoffier L., Laval G., Schneider S. 2005. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evolutionary bioinformatics, 1, 47-50Search in Google Scholar

Fu Y.X., Li W.H. 1993. Statistical tests of neutrality of mutations. Genetics, 133, 693-709Search in Google Scholar

Galbreath K.E., Eric P., Hoberg E.P. 2012. Return to Beringia: parasites reveal cryptic biogeographic history of North American pikas. Proceedings of the Royal Society B, 279, 371-378. DOI: 10.1098/rspb.2011.0482Search in Google Scholar

Gouy de Bellocq J., Ferte H., Depaquit J., Justine J.L., Tillier A., Durette-Desset M.C. 2001. Phylogeny of the Trichostrongylina (Nematoda) inferred from 28S rDNA sequences. Molecular Phylogenetics and Evolution, 19, 430-442. DOI: 10.1006/mpev. 2001.0925Search in Google Scholar

Gouy de Bellocq J., Morand S., Feliu C. 2002. Patterns of parasite species richness of western Paleartic micro-mammals: island effects. Ecography, 25, 173-183Search in Google Scholar

Gouy de Bellocq J., Sara M., Casanova J.C., Feliu C., Morand S. 2003. A comparaison of the strcuture of helminth communities in the woodmouse, Apodemus sylvaticus, on islands of the Western mediterranean and continental Europe. Parasitology Research, 90, 64-70. DOI: 10.1007/s00436-002-0806-1Search in Google Scholar

Grikienienne J. 2005. Investigations into endoparasites of small mammals in the environs of Lake Drukdiai. Acta Zoologica Lituanica, 15, 109-114Search in Google Scholar

Guindon S., Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology, 52, 696-704. DOI: 10.1080/10635150390235520Search in Google Scholar

Hall T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symposium Series, 41, 95-98Search in Google Scholar

Harpending H.C. 1994. Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Human Biology 66, 591-600Search in Google Scholar

Haukisalmi V., Henttonen H., Tenora F. 1988. Population dynamics of common and rare helminths in cyclic vole populations. Journal of Animal Ecology, 57, 807-825Search in Google Scholar

Haukisalmi V., Henttonen H. 1993. Populations dynamics of taenia polyacantha metacestodes in the bank vole Clethrionomys glareolus. Annales Zoologici Fennici, 30, 81-84Search in Google Scholar

Haukisalmi V., Henttonen H., Vikman P. 1996. Variability of sex ratio, mating probability and egge production in an intestinal nematode in its fluctuating host population International Journal for Parasitology, 26, 755-764. DOI: 10.1016/0020-7519(96)00058-6Search in Google Scholar

Hudson R.R., Salatkin M., Maddison W.P. 1992. Estimation of levels of gene flow from DNA sequence data. Genetics, 132, 583-590Search in Google Scholar

Jones P.H., Britten H.B. 2010. The absence of concordant population genetic structure in the black-tailed prairie dog and the flea, Oropsylla hirsuta, with implications for the spread of Yersinia pestis. Molecular Ecology, 19, 2038-2049. DOI: 10.1111/j.1365-294X.2010.04634.x Search in Google Scholar

Jukes T.H., Cantor C.R. 1969. Evolution of protein molecules. In: Munroled, H.N. (Ed.), Mammalian Protein Metabolism. Academy Press, New York, pp. 31-132Search in Google Scholar

Kia E.B., Shahryary-Rad E., Mohebali M., Mahmoudi M., Mobedi I., Zahabiun F., Zarei Z., Miahipoor A., Mowlavi Gh., Akhavan A.A., Vatandoost’ H. 2010. Endoparasites of Rodents and Their Zoonotic Importance in Germi, Dashte-Mogan, Ardabil Province, Iran. Iranian Journal of Parasitology, 5, 15-20Search in Google Scholar

Koressaar T., Remm M. 2007. Enhancements and modifications of primer design program Primer3 . Bioinformatics, 23, 1289-1291. DOI: 10.1093/bioinformatics/btm091 Search in Google Scholar

Lessa E.P., Cook J.A., Patton J.L. 2003. Genetic footprints of demographic expansion in North America, but not Amazonia, during the Late Quaternary. Proceedings of the National Academy of Sciences of the United States of America, 100, 10331-10334. DOI: 10.1073/pnas.1730921100Search in Google Scholar

Librado P., Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451-1452. DOI: 10.1093/bioinformatics/btp187Search in Google Scholar

Lynch M., Crease T. 1990. The analysis of population survey data on DNA sequence variation. Molecular Biology and Evolution , 7, 377-394Search in Google Scholar

Mavarez J., Pointier J-P., David P., Delay B., Jarne P. 2002. Genetic differentiation, dispersal and mating system in the schistosome- transmitting freshwater snail Biomphalaria glabrata. Heredity, 89, 258-265. DOI: 10.1038/sj.hdy.6800127Search in Google Scholar

Mazeika V., Paulauskas A., Balciauskas L. 2003. New data on the helminth fauna of rodents of Lithuania. Acta Zoologica Lituanica, 13, 41-47. DOI: 10.1080/13921657.2003.10512542Search in Google Scholar

McCoy K., Boulinier T., Tirard C., Michalakis Y. 2003. Host-dependent genetic structure of parasite populations: differential dispersal of seabird tick host races. Evolution, 57, 288-296. DOI: 10.1111/j.0014-3820.2003.tb00263.x Search in Google Scholar

McCoy K., Boulinier T., Tirard C. 2005. Comparative host-parasite population structures: disantangling prospecting and dispersal in the black-legged kittiwake Rissae tridactyla. Molecular Ecology, 14, 2825-2838. DOI: 10.1111/j.1365-294X.2005.02631.x Search in Google Scholar

Mulvey M., Aho J.M., Lydeard C. 1991. Comparative population genetic structure of a parasite (Fascioloides magna) and its definitive host. Evolution, 45, 1628-1640. DOI: 10.2307/2409784Search in Google Scholar

Nadler S.A., Hafner M.S. 1990. Genetic differentiation among chewing louse populations (Mallaphaga: Trichodectidae) in a pocket gopher contact zone (Rodentia: Geomyidae). Evolution, 44, 942-951Search in Google Scholar

Nieberding C., Morand S., Libois R., Michaux J.R. 2004. A parasite reveals cryptic phylogeographic history of its host. Proceedings of the Royal Society of London. Series B, 271, 2559-2568. DOI: 10.1098/rspb.2004.2930Search in Google Scholar

Nieberding C., Libois R., Douady S., Morand S., Michaux J.R. 2005. Phylogeography of a nematode (Heligmosomoides polygyrus) in the western Palearctic region: persistence of northern cryptic populations during ice ages? Molecular Ecology, 14, 765-779. DOI: 10.1111/j.1365-294X.2005.02440.x Search in Google Scholar

Nieberding C.M., Olivieri I. 2007. Parasites: proxies for host genealogy and ecology? Trends in Ecology and Evolution, 22, 156-165. DOI: 10.1016/j.tree.2006.11.012Search in Google Scholar

Nieberding C., Durette-Desset M.C., Vanderpoorten A., Casanova J.C., Ribas A., Deffontaine V., Feliu C., Morand S., Libois R., Michaux J.R. 2008. Geography and host biogeography matter for understanding the phylogeography of a parasite. Molecular Phylogenetics and Evolution, 47, 538-554. DOI:10.1016/j.ympev.2008.01.028Search in Google Scholar

Nei M. 1973. Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences of the United States of America, 70, 3321-3323Search in Google Scholar

Nei M., Tajima F. 1983. Maximum likelihood estimation of the number of nucleotide substitutions from restriction sites data. Genetics 105, 207-217Search in Google Scholar

N’Zobadila G. 1994. Biologie d’Heligmosomoides polygyrus polygyrus (Dujardin, 1845) (Nematoda-Trichostrongylina). Comparaison avec les especes proches et sa sous speciation americaine. These de Doctorat. Museum National d’Histoire Naturelle, pp. 183Search in Google Scholar

Petit R.J., Duminil J., Fineshi S., Hampe A., Salvini D., Vendramin G.V. 2005. Comparative organization of chloroplast, mitochondrial and nuclear diversity in plant populations. Molecular Ecology, 14, 689-701. DOI: 10.1111/j.1365-294X.2004.02410.x Search in Google Scholar

Parker M.A., Spoerke J.M. 1998. Geographic structure of lineage associations in a plant-bacterial mutualism. Journal of Evolutionary Biology, 11, 549-562. DOI: 10.1046/j.1420-9101. 1998.11050549.x Search in Google Scholar

Posada D., Crandall K.A. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817-818. DOI: 10.1093/bioinformatics/ 14.9.817Search in Google Scholar

Price P.W. 1980. Evolutionary Biology of Parasites. Princeton University Press, Princeton, New Jersey, USA Ramos-Onsins S.E., Rozas J. 2002. Statistical properties of new neutrality tests against population growth. Molecular Biology and Evolution, 19, 2092-2100Search in Google Scholar

Rogers A.R., Harpending H. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution, 9, 552-569Search in Google Scholar

Saitou N., Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406-425Search in Google Scholar

Schulthesis A.S., Weigt L.A., Hendricks A.C. 2002. Gene flow, dispersal, and nested clade analysis among populations of the stonefly Peltoperla tarteri in the southern Appalachians. Molecular Ecology, 11, 317-327. DOI: 10.1046/j.1365-294X.2002.01445.x Search in Google Scholar

Slatkin M., Hudson R.R. 1991. Pairwise comparaisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics, 12, 555-562Search in Google Scholar

Spitzenberger F. 1999. Clethrionomys glareolus. In: The Atlas of European Mammals (eds Mitchell-Jones AJ, Amori G, Bogdanowicz. W et al.), Academic Press, London. pp. 212-213Search in Google Scholar

Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585-595 Search in Google Scholar

Tamura K., Nei M., Kumar S. 2004. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proceedings of the National Academy of Sciences of the United States of America, 101, 11030-11035Search in Google Scholar

Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. 2011. MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Molecular Biology and Evolution, 28, 2731-2739. DOI: 10.1093/molbev/msr121Search in Google Scholar

Trewick S.A., Wallis G.P. 2001. Bridging the ‘beech-gap’: New Zealand invertebrate phylogeography implictes Pleistocen glaciation and Pliocene isolation. Evolution, 55, 2170-2180Search in Google Scholar

Wickstrom L.M., Haukisalmi V., Varis S., Hantula J., Fedorov V.B., Henttonen H. 2003. Phylogeography of the circumpolar Paranoplocephala arctica species complex (Cestoda: Anoplocephalidae) parasitizing collared lemmings (Dicrostonyx spp.). Molecular Ecology, 12, 3259-3371. DOI: 10.1046/ j.1365-294X.2003.01985.x Search in Google Scholar

Whiteman N.K., Kimball R.T., Parker P.G. 2007. Co-phylogeography and comparative population genetics of the threatened Galapagos hawk and three ectoparasite species: ecology shapes population histories within parasite communities. Molecular Ecology, 16, 4759-4773. DOI: 10.1111/j.1365-294X.2007. 03512.x Search in Google Scholar

Wright S. 1951. The genetical structure of populations. Ann. Eugen., 15, 323-354Search in Google Scholar

Zhigileva O.N. 2011.Correlation between Biodiversity Indices of Small Mammals and Their Helminths in West Siberian Ecosystems. Contemporary Problems of Ecology, 4, 416-422 Search in Google Scholar