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Database Analysis and Gene Discovery in Pharmacogenetics

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Published/Copyright: June 1, 2005
Clinical Chemistry and Laboratory Medicine (CCLM)
From the journal Volume 38 Issue 9

Abstract

The global genome research effort has resulted in the creation of extensive DNA and protein sequence databases that are a valuable resource for the identification of new genes and polymorphic variants of enzymes of pharmacogenetic interest. Previously undescribed members of gene families with novel functions and substrate specificities can be identified by database searching and sequence alignment strategies. Since the expressed sequence tag (EST) database contains sequences from many individuals, it can be searched for evidence of polymorphisms that can significantly influence enzyme function. The different approaches to these forms of analysis are reviewed and illustrated with examples from the glutathione transferase gene family.

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Published Online: 2005-06-01
Published in Print: 2000-09-18

Copyright © 2000 by Walter de Gruyter GmbH & Co. KG

Articles in the same Issue

  1. The Basis of the Medicine of Tomorrow "Validating and Using Pharmacogenomics" Joint IFCC-Roche Diagnostics Conference, Kyoto, Japan, 1619 April 2000
  2. Diagnostics and the Future of Medicine
  3. Operomics: Molecular Analysis of Tissues from DNA to RNA to Protein
  4. Idiosyncratic Reactions to Drugs: Can Medicine Response Profiles Provide a Dynamic Drug Surveillance System?
  5. Hunting for Disease Genes in Multi-Functional Diseases
  6. Familial Studies on the Genetics of Cardiovascular Diseases: the Stanislas Cohort
  7. Quantitative PCR
  8. Gene Amplification as Means for Determining Therapeutic Strategies in Human Cancers
  9. Apolipoprotein E Polymorphisms and Concentration in Chronic Diseases and Drug Responses
  10. Angiotensin I-Converting Enzyme Gene Polymorphism and Drug Response
  11. Drug-Metabolizing Enzymes, Polymorphisms and Interindividual Response to Environmental Toxicants
  12. Database Analysis and Gene Discovery in Pharmacogenetics
  13. How to Manage Individualized Drug Therapy: Application of Pharmacogenetic Knowledge of Drug Metabolism and Transport
  14. P-Glycoprotein and Bioavailability-Implication of Polymorphism
  15. Cancer Therapy and Polymorphisms of Cytochromes P450
  16. Polymorphisms in UDP Glucuronosyltransferase Genes: Functional Consequences and Clinical Relevance
  17. The Human Multidrug Resistance-Associated Protein (MRP) Gene Family: From Biological Function to Drug Molecular Design
  18. Ethnic Differences in Drug Metabolism
  19. Hypervariable Region 1 of Hepatitis C Virus Genome and Response to Interferon Therapy
  20. A Functional Genomic Study of the Effects of Antipsychotic Agent Chlorpromazine in PC12 Cells
  21. Influence of Glutathione S-Transferase M1 and T1 Genotypes on Larynx Cancer Risk among Korean Smokers
  22. CYP2D6 Genotyping in Patients on Psychoactive Drug Therapy
  23. Genotyping of CYP2D6 in Parkinsons's Disease
  24. Rapid Analysis of CGG Repeat Length in the FMR1 Gene
  25. Multiplex In-cell Reverse Transcription-Polymerase Chain Reaction for the Simultaneous Detection of p210 and p190 BCR-ABL mRNAs in Chronic Myeloid Leukemia and Philadelphia-Positive Acute Lymphoblastic Leukemia Cell Lines
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