Classification of Genomic Sequences via Wavelet Variance and a Self-Organizing Map with an Application to Mitochondrial DNA

Articles in the same Issue

1. Article
2. Epistatic Interactions
3. Testing for Gene-Gene Interaction with AMMI Models
4. A Bayesian Hierarchical Model for Quantitative Real-Time PCR Data
5. Informative or Noninformative Calls for Gene Expression: A Latent Variable Approach
6. Detecting Genotyping Error Using Measures of Degree of Hardy-Weinberg Disequilibrium
7. Optimisation of HMM Topologies Enhances DNA and Protein Sequence Modelling
8. The Apportionment of Total Genetic Variation by Categorical Analysis of Variance
9. Dealing with Heterogeneity between Cohorts in Genomewide SNP Association Studies
10. An Empirical Bayesian Method for Estimating Biological Networks from Temporal Microarray Data
11. Parameter Estimation in Multiple-Hidden I.I.D. Models from Biological Multiple Alignment
12. Asymptotic Distribution of the "Orthogonal" Quantitative Transmission Disequilibrium Test in a Structured Population: Exact Formula
13. Comparing Spatial Maps of Human Population-Genetic Variation Using Procrustes Analysis
14. An Internal Calibration Method for Protein-Array Studies
15. Weighted-LASSO for Structured Network Inference from Time Course Data
16. Trilocus Disequilibrium Analysis of Multiallelic Markers in Outcrossing Populations
17. Sparse Partial Least Squares Classification for High Dimensional Data
18. Reconstructability Analysis as a Tool for Identifying Gene-Gene Interactions in Studies of Human Diseases
19. Sub-Modular Resolution Analysis by Network Mixture Models
20. Space Oriented Rank-Based Data Integration
21. The Generalized Odds Ratio as a Measure of Genetic Risk Effect in the Analysis and Meta-Analysis of Association Studies
22. Network Enrichment Analysis in Complex Experiments
23. Shrinkage Estimation of Effect Sizes as an Alternative to Hypothesis Testing Followed by Estimation in High-Dimensional Biology: Applications to Differential Gene Expression
24. Buckley-James Boosting for Survival Analysis with High-Dimensional Biomarker Data
25. A Random Coefficients Model for Regional Co-Expression Associated with DNA Copy Number
26. Locating Multiple Interacting Quantitative Trait Loci with the Zero-Inflated Generalized Poisson Regression
27. Classification of Genomic Sequences via Wavelet Variance and a Self-Organizing Map with an Application to Mitochondrial DNA
28. Confidently Estimating the Number of DNA Replication Origins
29. Generalizing Moving Averages for Tiling Arrays Using Combined P-Value Statistics
30. Lasso Logistic Regression, GSoft and the Cyclic Coordinate Descent Algorithm: Application to Gene Expression Data
31. Granger Causality Analysis of Human Cell-Cycle Gene Expression Profiles
32. Mapping Quantitative Trait Loci in a Non-Equilibrium Population
33. On the Optimal Design of Genetic Variant Discovery Studies
34. On Optimal Selection of Summary Statistics for Approximate Bayesian Computation
35. Assessment of LD Matrix Measures for the Analysis of Biological Pathway Association
36. Optimal Tests Shrinking Both Means and Variances Applicable to Microarray Data Analysis
37. The Detection of Blur in Affymetrix GeneChips
38. Regression-Based Multi-Trait QTL Mapping Using a Structural Equation Model
39. Spatial Clustering of Array CGH Features in Combination with Hierarchical Multiple Testing
40. Predicting Patient Survival from Longitudinal Gene Expression
41. Including Probe-Level Measurement Error in Robust Mixture Clustering of Replicated Microarray Gene Expression
42. Reader's Reaction
43. An Alternative Model of Type A Dependence in a Gene Set of Correlated Genes
44. Letter to the Editor
45. Permutation P-values Should Never Be Zero: Calculating Exact P-values When Permutations Are Randomly Drawn