Home Synthesis, structure and fluorescence of a novel zinc(II) polymer based on N-[(3-pyridine)-3-sulfonyl]-threonine
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Synthesis, structure and fluorescence of a novel zinc(II) polymer based on N-[(3-pyridine)-3-sulfonyl]-threonine

  • Jiaming Cui , Huimin Chen , Jiaojiao Guo , Zhenfeng Ma , Yimin Jiang , Yi-Jun Liang EMAIL logo and Jun-Xia Li EMAIL logo
Published/Copyright: January 23, 2025

Abstract

A novel zinc(II) polymer based on pyridine sulfonyl amino acid, namely [Zn(HL)(H2O)2]n·4H2O (1) (HL=(1-carboxylato-2-hydroxypropyl)(pyridin-3-sulfonyl)-threonine), was synthesized by reacting Zn(NO3)2·6H2O with H3L in a mixed solvent solution of MeCN/EtOH/H2O under acidic conditions. Single crystal X-ray diffraction analysis revealed that the polymer 1 crystallized in trigonal crystal system, space group P3121. Notably, the unit cell of the as-formed polymer 1 contains only one crystallographically independent zinc(II) ion, and the divalent anion ligand HL adopts a coordination pattern of η122. The zinc(II) central ions are connected by bridging coordination with the HL ligand through pyridyl nitrogen and carboxy oxygen atoms to form an infinite helix chain. Furthermore, numerous hydrogen bonds were observed among these chains, joining them into a 2D supramolecular network. Finally, the complex is stacked along the 31 helical axis to yield a three-dimensional supramolecular structure. Additionally, the thermal stability and photoluminescence properties of 1 were determined and discussed.

1 Introduction

Recently, inorganic chemistry has witnessed a surge in research on high-performance coordination polymers, especially focusing on innovative synthesis strategies, improved physicochemical properties, and expanded applications. 1 , 2 , 3 These complexes offer unique structures and functionalities that make them promising candidates for diverse areas such as gas adsorption, 4 chemical separation and purification, 5 ion recognition, 6 magnetic and battery materials 7 , 8 , 9 as well as biomedical applications. 10 , 11 , 12 Among these compounds, heterocyclic sulfonic acids and their derivatives have gained significant attention due to their flexible coordination modes, facile bridging through auxiliary ligands, and specific binding affinity towards metal ions. 13 , 14 These features provide considerable advantages for designing and synthesizing novel coordination polymers using sulfonic acid and their derivatives. Consequently, researchers are actively exploring new synthetic methods to enhance the stability and functionalization of these compounds. 15 , 16 Furthermore, precise control over coordination environments enhances adaptability and selectivity of complexes for specific applications. For example, Deng’s group has developed the original sulfonic acid and amino group functionalized Zn-MOF that efficiently adsorb and selectively separate acetylene. 17 Recently, Luo and co-works have also made significant progress in developing separation materials with exceptional selectivity and efficiency, achieving ultra-high Ba(II) adsorption capacity and proton conductivity. 18 Similarly, extensive research conducted by He et al. has yielded substantial evidence supporting the potential for clinical translation of sulfosalicylic acid/Fe3+ based nanoscale coordination polymers in cancer prevention. 19

In addition, the amino acids are widely recognized for possessing two functional groups, namely the amino group and the carboxyl group, which play a crucial role in facilitating peptide bond synthesis through amide bond formation. 20 This enhances the stability and biocompatibility of the complex, improves its solubility and distribution within organisms, increases drug bioavailability, and reduces toxic side effects. 21 In particular, N-acylated amino acid complexes have gained significant attention owing to their distinctive chemical and biological properties. Through N-acylation substitution, the nitrogen atom of amino acids can be protected against structural damage during chemical reactions. The preservation of this protective mechanism is crucial for maintaining the biological activity of amino acids. 22 Furthermore, N-acylated amino acids exhibit structural similarity to the carboxyl terminus of peptide chains and possess the potential to mimic natural peptide chain behavior. Additionally, they play crucial roles in diverse biological processes such as serving as substrates for metabolism or inhibitors of viral replication, as well as functioning as signal molecules. 23

Our group has been actively involved in synthesizing nitrogen-containing heterocyclic sulfonic acids and their acylated amino acids to investigate their properties. The group members have successfully synthesized numerous structurally innovative complexes during this process, and have discovered that these ligands display flexible coordination modes along with a high level of structural innovation. Additionally, these as-developed polymers exhibit outstanding magnetism, fluorescence, and biological activity. 24 , 25 , 26 , 27 , 28 Considering the pivotal role of zinc ions in biomedical applications, particularly their involvement in diverse physiological processes, we have developed and synthesized a novel zinc(II) polymer by utilizing Zn(NO3)2·6H2O as the precursor and N-[(3-pyridine)-3-sulfonyl]-threonine as the ligand. The as-prepared polymer was further characterized through infrared spectroscopy, elemental analysis, and X-ray diffraction. It is noteworthy that the nitrogen and oxygen atoms of the ligand establish coordination bonds with the central metal ion, thereby constructing an infinite helical chain along the a-axis. In light of this, the polymer further facilitates the formation of a two-dimensional network through intermolecular hydrogen bonding, subsequently assembling into a three-dimensional supramolecular structure via helical stacking. Subsequently, its thermal stability and solid-state fluorescence properties were investigated. The present research will contribute to the development of an innovative strategy for investigating the synthesis of supramolecular complexes based on pyridine sulfonated amino acids, thereby establishing a solid foundation for future biomedical applications of functional polymers derived from heterocyclic sulfonated amino acids.

2 Experimental

2.1 Materials and methods

The reagents utilized were of analytical grade and did not necessitate further purification. The ligand H3L was synthesized according to a previously reported method with similar procedures. 29 A mixture of acetonitrile, ethanol and aqueous solution at a ratio of 1:3:2 was added to N-[(3-pyridine)-3-sulfonyl]-threonine (0.4 mmol) and Zn(NO3)2·6H2O (0.4 mmol). The pH of the mixture was adjusted to approximate 6 using triethylamine solution and stirred at 55 °C for 12 h. After filtration and evaporation of volatile residues at room temperature, colorless block-like crystals were obtained after 90 days with a yield of 8.3 % (based on Zn). Notably, the complex’s IR spectrum was obtained using KBr as the substrate on an FT-IR spectrometer (PE Spectrum One, USA), its thermal behavior examined by thermogravimetric analysis (Labsys Evo-TGA, France), and solid-state fluorescence characterization carried out using an HORIBA JOBIN JVON fluorescence spectrophotometer (FL3-P-TCSPC, France). IR spectrum (KBr, cm−1): 3,424(vs), 2,395(w), 1,606(m), 1,384(vs), 1,171(s), 1,083(s), 1,026(m), 919(w), 825(m), 751(w), and 595(w). C9H23N2O11SZn (Mr = 432.72, %): calcd. C 24.98, H 1.16, N 6.47 %. Found C 22.38, H 1.26, N 7.27.

2.2 X-ray diffraction

The diffraction data were collected at 293 K using an Agilent Super-Nova diffractometer with Mo-Kα radiation (λ = 0.71073 Å) and analyzed using Olex2. 30 The structure was solved through Direct Methods, and organic hydrogen atoms were generated based on their geometry. Additionally, anisotropic thermal parameters were employed to refine all non-hydrogen atoms, which were further refined using the full matrix least square method in the SHELXTL program package. 31 Tables 1 and 2 present the crystallographic data and selected bond distances and angles of synthetic polymer [Zn(HL)(H2O)2]n·4H2O, as well as the corresponding hydrogen bond geometries were depicted in Table 3.

Table 1:

Crystal data and structure refinement for [Zn(HL)(H2O)2]n·4H2O (1).

Polymer [Zn(HL)(H2O)2]n·4H2O(1)
Empirical formula C9H23N2O11SZn
Formula weight 432.75
Temperature, K 293.2(3)
Crystal size, mm3 0.25 × 0.19 × 0.08
Crystal system Trigonal
Space group P3121
a (Å) 9.9821(4)
c (Å) 30.4612(15)
V/3) 2,628.6(3)
Z 6
D c (g/cm−3) 1.64
μ (MoKα), mm−1 1.6
F(000), e 1,350
hkl range −10 ≤ h ≤ 11, −12 ≤ k ≤ 11, −28 ≤ l ≤ 37
Radiation wave length λ, Å 0.71073
2θ range for data collection (°) 6.19–52.736
Reflections collected 7,552
Independent reflections 3,297
R int 0.0321
Param. refined 256
Goodness-of-fit on F2 (cGoF) 1.076
R(F)/wR(F2)a,b (all refl.) (all data) R1 = 0.0521, wR2 = 0.1146
Weighting factors A/Bb 0.0583, 1.5051
Δρfin (max/min), e Å−3 0.56/−0.47
Flack parameter −0.011(19)
  1. aR(F) = Σ||Fo| – |Fc||/Σ|Fo|; bwR(F2) = [Σw(Fo2 – Fc2)2/Σw(Fo2)2]1/2; w = [σ2(Fo2) + (AP)2 + BP]−1, where P = (Max(Fo2, 0) + 2Fc2)/3; cGoF = S = [Σw(Fo2 – Fc2)2/(nobs – nparam)]1/2.

Table 2:

Selected bond distance (Å) and bond angle (°) for [Zn(HL)(H2O)2]n·4H2O (1).

Atomic distances (Å)
Zn1–O1 2.073(5) Zn1–N1 2.099(4)
Zn1–O2 2.023(3) Zn1–N2A 2.079(3)
Zn1–O6A 2.110(3)

Bond angles (°)

O1–Zn1–O6A 87.32(16) O2–Zn1–N1 93.96(15)
O1–Zn1–N1 92.74(19) O2–Zn1–N2A 143.64(17)
O1–Zn1–N2A 115.49(18) N1–Zn1–O6A 176.56(13)
O2–Zn1–O1 98.1(2) N2A–Zn1–O6A 79.21(13)
O2–Zn1–O6A 89.44(14) N2A–Zn1–N1 97.68(14)
  1. Symmetry codes: (A) x, y − 1, −z + 1.

Table 3:

Hydrogen bond geometries (Å, deg) for [Zn(HL)(H2O)2]n·4H2O (1).

D–H⋯A D–H H⋯A D⋯A D–H⋯A
O(1)–H(1A)⋯O(12)#1 0.85(2) 1.93(3) 2.758(11) 168(6)
O(1)–H(1B)⋯O(8)#2 0.84(6) 2.16(5) 2.962(7) 158(6)
O(2)–H(2A)···O(6)#3 0.85(3) 1.86(5) 2.674(6) 161(4)
O(2)–H(2B)⋯O(10)#4 0.85(5) 1.90(5) 2.724(11) 165(5)
O(7)–H(7)···O(5)#5 0.82 1.90 2.698(5) 164
O(8)–H(8A)···O(1)#6 0.86(7) 2.43(10) 2.962(6) 121(9)
O(9)–H(9A)···O(1) 0.85(4) 2.11(4) 2.908(7) 155(6)
O(10)–H(10A)···O(11) 0.85(9) 2.37(10) 2.874(11) 118(8)
O(10)–H(10B)⋯O(12) 0.84(8) 2.44(9) 3.274(11) 177(12)
O(11)–H(11A)···O(5)#7 0.86(8) 1.99(6) 2.709(9) 141(9)
O(11)–H(11B)⋯O(10) 0.87(6) 2.40(11) 2.874(11) 115(8)
O(12)–H(12A)⋯O(10) 0.85(12) 2.46(11) 3.274(11) 161(10)
O(12)–H(12B)⋯O(3) 0.85(11) 2.12(13) 2.898(11) 153(11)
  1. Symmetry codes: (#1) x, y − 1, z; (#2) −x + y, −x, z − 1/3; (#3) −x + y − 1, −x, z − 1/3; (#4) x − y + 1, −y + 1, −z + 2/3; (#5) −x, −x + y, −z + 4/3; (#6) y, x, −z + 1; (#7) xy, −y + 1, −z + 5/3.

3 Results and discussion

3.1 Structural description

The as-formed coordination polymer 1 belongs to the trigonal crystal system corresponding to the space group P3121, based on single-crystal X-ray crystallography data. Additionally, only one chemically independent Zn atom was observed in the asymmetric unit (Figure 1). The Zn(II) ion forms coordination bonds with the nitrogen atom N1 and N2A located on the pyridine ring and the amino group respectively, along with the oxygen atom (O6A) from the carboxyl group and two water molecules (O1w and O2w). This leads to a trigonal bipyramidal coordination geometry for the central ion. Obviously, the coordinating atoms exhibit a monodentate coordination pattern, wherein the N2A atom on the ligand’s amino group and the O6A atom on the carboxyl group form a stable five-membered ring structure with the central metal atom. Moreover, the Zn–O bond lengths range from 2.023(3) to 2.110(3) Å, while the Zn–N bond lengths vary between 2.079(3) and 2.099(4) Å, which are comparable to previously reported results. 32 , 33 , 34

Figure 1: 
Coordination environment of Zn(II) ions in 1.
Figure 1:

Coordination environment of Zn(II) ions in 1.

It is noteworthy that ligands bind to Zn(II) ion in a η1:η2:μ2 coordination pattern. Typically, the central metal ion forms a helical structure by bridging two different ligand-related atoms, with one ligand contributing the nitrogen atom on the pyridine ring and the other ligand providing the nitrogen atom on the amino group and an oxygen atom from the carboxyl group. This bridging pattern leads to the formation of an infinite helical chain structure along the a-axis (Figure 2). In addition, each individual chain of the complex exhibits 2-fold screw axis symmetry. In the presence of water molecules, extensive intermolecular hydrogen bonding interactions between chains give rise to a two-dimensional supramolecular structure. Notably, the chains are replicated and arranged in an identical helical manner among each other (Figure 3).

Figure 2: 
The helical structure of 1. (A) Helical chain structure along the a-axis of for 1; (B) Schematic diagram illustrates the helix axis corresponding to the chain of 1.
Figure 2:

The helical structure of 1. (A) Helical chain structure along the a-axis of for 1; (B) Schematic diagram illustrates the helix axis corresponding to the chain of 1.

Figure 3: 
2D supramolecular network for 1 formed through the weak hydrogen bond interactions between 1D helical polymer chains.
Figure 3:

2D supramolecular network for 1 formed through the weak hydrogen bond interactions between 1D helical polymer chains.

Since the complex belongs to the space group P3121, it contains a 31 helical axis exists. By analyzing the two-dimensional structure of the complex, it can be observed that the polymer chains are replicated and arranged within a single layer. Therefore, an initial inference is made that the three-dimensional structure of the complex consists of three stacked planes (Figure 4). To further investigate how the one-dimensional chains in the complex are arranged in the three-dimensional space, a chain was selected from each layer and plotted, revealing a 31 helical arrangement between different layers along the c-axis direction. A careful examination of its three-dimensional stacking structure reveals an intriguing phenomenon: unlike common helical structures formed by minimal molecular units, this complex constructs its 31 helical axis based on chains as fundamental units. Thus, it can be concluded that countless units with 31 helical axes are orderly arranged to form the three-dimensional supramolecular structure.

Figure 4: 
3D supramolecular structure of 1 and its representation of layered stacking mode along the 31 helical axis.
Figure 4:

3D supramolecular structure of 1 and its representation of layered stacking mode along the 31 helical axis.

3.2 Thermogravimetric analysis

The thermogravimetric analysis was performed over a temperature range spanning from ambient conditions up to 1,000 °C, utilizing a heating rate of 278 K per minute and maintaining continuous N2 flow. As depicted in Figure S5, an initial weight loss of [Zn(HL)(H2O)2]n·4H2O at around 148 °C is observed, which can be attributed to the release of coordinated and free water molecules. The observed weight loss percentage was approximately 8.4 %. Subsequently, upon further heating, the polymer framework underwent rapid decomposition with a significant weight reduction (observed weight loss percentage: 68 %), suggesting that this decline could be ascribed to the degradation of the sulfonyl threonine ligand. As the temperature continued to rise, the degradation rate of the polymer decreased, leading to the formation of a pyrolysis residue at approximately 1,000 °C.

3.3 Photoluminescence spectroscopy

The solid-state fluorescence spectra of the ligand, N-[(3-pyridyl)-3-sulfonyl]-threonine, and the resultant coordination polymer, [Zn(HL)(H2O)2]n·4H2O, were recorded at ambient temperature under identical experimental conditions. As illustrated in Figure 5, the emission signal of [Zn(HL)(H2O)2]n·4H2O reached its maximum at 478 nm while excited at a wavelength of 410 nm. Meanwhile, the coordination polymer exhibited a red shift of approximately 56 nm in its maximum emission wavelength compared to the ligand (the inset in Figure 5, λex = 372 nm, λem = 422 nm). Furthermore, the amplitude-weighted average fluorescence lifetimes of both the ligand and the coordination polymer were examined, yielding fitted values of 1.3 and 1.4 ns, respectively (Figure S6). In fact, the Zn(II) ions, characterized by a d10 electron configuration, generally do not undergo significant electronic transitions involving changes in the dd* configuration (i.e., transitions into excited states centered on the metal). However, when Zn(II) ions are coordinated with pyridine sulfonyl threonine ligands, the coordination interaction significantly alters the distribution of electron cloud density among these ligands. The observed phenomenon can be attributed to the coordination pattern of Zn(II) ions with the pyridine sulfonyl glycine ligand and solvent molecules. In particular, the redshift phenomenon is typically closely associated with the formation of hydrogen bonds between molecules, as these bonds can induce slight changes in electron energy levels, thereby impacting the emission wavelength of molecules. Moreover, when the rigidity of the as-formed coordination polymer is enhanced, it restricts rotational vibrational pathways that can improve the quantum yield of photoluminescence. Despite these influences, the decrease in fluorescence intensity may primarily result from the introduction of zinc atoms as a heavy metal center, which promotes stronger intersystem crossing (ISC) processes. Obviously, intersystem crossing refers to a non-radiative relaxation process that allows excited state molecules to release energy through non-radiative means and is particularly prevalent in molecules containing heavy atoms. We speculate that the addition of Zn(II) ions may significantly amplify this non-radiative relaxation process, resulting in decreased fluorescence intensity. In addition, the strength of hydrogen bonds exerts a substantial influence on the stability of excited states and fluorescent characteristics, particularly when hydrogen bond formation facilitates non-radiative relaxation processes. Consequently, the extensive hydrogen bond interactions observed within the as-formed polymer could potentially result in alterations to the fluorescence intensity. In fact, fluorescent mechanisms of coordination polymer are quite intricate and influenced by various factors including solvent effects, intersystem crossing processes, molecular rigidity and hydrogen bonding interactions among others. These factors collectively determine luminescent properties such as emission wavelength, fluorescence intensity and photoluminescence quantum yield of the polymers. 35 , 36 , 37 , 38 Therefore, further analysis and research are necessary for a more accurate understanding.

Figure 5: 
Solid-state photoluminescence spectra of 1 and its ligand (the inset, λex = 372 nm, λem = 422 nm) were measured at ambient temperature under identical experimental conditions. Noted: The red line indicating the excitation spectrum and the black line representing the emission spectrum of the coordination polymer 1.
Figure 5:

Solid-state photoluminescence spectra of 1 and its ligand (the inset, λex = 372 nm, λem = 422 nm) were measured at ambient temperature under identical experimental conditions. Noted: The red line indicating the excitation spectrum and the black line representing the emission spectrum of the coordination polymer 1.

4 Conclusions

The zine-based supramolecular structure, namely [Zn(HL)(H2O)2]n·4H2O, was successfully synthesized via the solvent evaporation method using N-[(3-pyridine)-3-sulfonyl]-threonine as the ligand. It is worth noting that during the coordination process, the zinc(II) ions exhibit a strong affinity towards the sulfonated threonine, resulting in a unique η1:η2:μ2 coordination mode. Additionally, intermolecular hydrogen bonding facilitates the formation of a two-dimensional network within the polymer chain, which further replicates along the c-axis in a 31 helical axis. Ultimately, these interactions give rise to an intriguing three-dimensional supramolecular structure. Furthermore, this quenching is likely attributed to the introduction of Zn(II) ions, which facilitate intersystem crossing, enhance molecular rigidity, and promote hydrogen bond interactions, among other contributing factors. Consequently, this study on the design and synthesis of novel supramolecular heterocyclic sulfonated amino acid polymer will serve as an exemplary demonstration of inorganic-organic hybrid materials.

5 Supporting Information

The supplementary data pertaining to the synthesis route of the ligand, infrared spectra of [Zn(HL)(H2O)2]n·4H2O and the ligand (H3L=N-[(3-pyridine)-3-sulfonyl]-threonine), nuclear magnetic resonance spectra of the ligand. Meanwhile, the powder X-ray diffraction patterns, thermo-gravimetric analysis (TGA) curve of the coordination polymer and the amplitude-weighted average fluorescence lifetimes of both the ligand and the coordination polymer can be accessed in the online version. The crystallographic data for the structural analysis have been deposited at the Cambridge Crystallographic Data Center under CCDC deposition numbers 2380327. Copies of this information can be obtained free of charge from the CCDC, located at 12 Union Road, Cambridge, CB2 1EZ, UK (Fax: þ44 1223 336 033; E-mail: or www.ccdc.cam.ac.uk).


Corresponding Author: Yi-Jun Liang, School of Medicine and School of Mechatronic Engineering and Automation, Foshan University, Foshan 528000, P.R. China, E-mail: ; and Jun-Xia Li, Henan Key Laboratory of Function-Oriented Porous Materials, College of Chemistry and Chemical Engineering, Luoyang Normal University, Luoyang 471934, P.R. China, E-mail:
Jiaming Cui, Huimin Chen and Jiaojiao Guo contributed equally to this work.
  1. Research ethics: Not applicable.

  2. Informed consent: Not applicable.

  3. Author contributions: All authors have accepted responsibility for the entire content of this manuscript and approved its submission. Jiaming Cui, Huimin Chen and Jiaojiao Guo made equal contributions to this study, being responsible for the experimentation, and manuscript writing. Zhenfeng Ma and Dr. Yimin Jiang conducted data analysis and participated in results discussion. Dr. Yi-Jun Liang and Dr. Jun-Xia Li provided supervision and revised the manuscript. All authors have approved the final version of the manuscript.

  4. Use of Large Language Models, AI and Machine Learning Tools: None declared.

  5. Conflict of interest: The authors state no conflict of interest.

  6. Research funding: The research was supported by the Self-Funded Science and Technology Innovation Project of Foshan (No. 2220001005664), the Stomatology Scientific Research and Cultivation Project of Foshan University (No. CGQ020), as well as the Key Scientific Research Projects in Colleges and Universities of Henan Province (No. 24A150023).

  7. Data availability: Not applicable.

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Supplementary Material

This article contains supplementary material (https://doi.org/10.1515/zkri-2024-0101).


Received: 2024-08-29
Accepted: 2024-12-15
Published Online: 2025-01-23
Published in Print: 2025-01-29

© 2025 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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