Home Crystal structures of 2-[5-nitrothien-2-yl)- CH=N–NR–CO(CH2)n]thiophene compounds (R = H or Me; n = 0 or 1)
Article
Licensed
Unlicensed Requires Authentication

Crystal structures of 2-[5-nitrothien-2-yl)- CH=N–NR–CO(CH2)n]thiophene compounds (R = H or Me; n = 0 or 1)

  • Laura N.F. Cardoso , Thais C.M. Noguiera , Carlos R. Kaiser , James L. Wardell EMAIL logo , Solange M.S.V. Wardell and Marcus V.N. de Souza
Published/Copyright: December 16, 2015

Abstract

The crystal structures of four acylhydrazonyl derivatives of thiophene, 2-(ArCH=N–NHCO)- thiophene, (1a), 2-(ArCH=N–NMeCO)-thiophene, (2a), 2-(ArCH=N–NHCOCH2)-thiophene, (3a) and 2-(ArCH= N–NMeCOCH2)-thiophene, (4a) [in each case Ar= 5-nitrothien-2-yl] are reported. The molecular conformations of 1a and 2a are near planar, while those of 3a and 4a exhibit bends at the methylene carbon. Methylations at the hydrazonyl groups in 1a and 3a, to give 2a and 4a, do not result in any significant changes in the molecular conformations. Each of the four molecular conformations possesses a ZC(O)NR/E(C=N) arrangement about the C(O)–NR–N=C(H, aryl) fragment (R=H or Me). The dominant intermolecular interactions in 1a and 3a are N–H···O(carbonyl) hydrogen bonds, with other intermolecular interactions being weaker interactions: C–H···O and N–O···π in 1a and C–H···X (X=O, S, π) and π–π interactions in 3a. In the N-methylated compounds, the intermolecular interactions are restricted to weaker C–H···O hydrogen bonds in 2a and C–H···X (X=O or π) interactions in 4a.


Corresponding author: James L. Wardell, Fundação Oswaldo Cruz, Instituto de Tecnologia em Fármacos-Far Manguinhos, Manguinhos, 21041-250, Rio de Janeiro, Brazil; and Department of Chemistry, University of Aberdeen, Old Aberdeen, AB24 3UE, Scotland, E-mail:

Acknowledgments

The use of the NCS crystallographic service at Southampton and the valuable assistance of the staff there are gratefully acknowledged. JLW thanks FAPERJ and CNPq, Brazil for support.

References

[1] I. E. Perepichka, D. F. Perepicka, Eds, Handbook of Thiophene-Based Materials: Applications in Organic Electronics and Photonics, 2 Volume Set, Wiley, UK, 2009.10.1002/9780470745533Search in Google Scholar

[2] L. Chan, O. Pereira, T. J. Reddy, K. D. Sanjov, C. Possion, M. Courchesne, M. Proulx, A. Siddiqui, C. G. Yannopoulos, Discovery of thiophene-2-carboxylic acids as potent inhibitors of HCV NS5B polymerase and HCV subgenomic RNA replication. Part 2: Tertiary amides. Bioorg. Med. Chem. Lett.2004, 14, 797.10.1016/j.bmcl.2003.10.068Search in Google Scholar

[3] R. Romagnoli, P. G. Baraldi, P. Cruz-Lopez, M. Tolomeo, A. Di Cristina, R. M. Pipitone, S. Grimaudo, J. Balzarini, A. Brancale, E. Hamei, Synthesis of novel antimitotic agents based on 2-amino-3-aroyl-5-(hetero)arylethynyl thiophene derivatives. Bioorg. Med. Chem. Lett.2011, 21, 2746.10.1016/j.bmcl.2010.11.083Search in Google Scholar

[4] A. Sivadas, M. P. Satyaseela, T. Bharani, S. K. Upparapalli, N. Subbarava, Design, Synthesis, Characterization and antibacterial activity of methyl -2-(mercaptomethyl)-3-(2-thienyl) acrylate. Int. J. Pharm. Sci. Res.2011, 2, 27.Search in Google Scholar

[5] S. Jain, N. Babu, S. R. Jatti, H. Sahah, S. P. Dhaneira, Synthesis, antitubercular and antifungal activities of heteroaryl-substituted oxiranes derived from Baylis–Hillman adducts. Med. Chem. Res.2012, 21, 2744.10.1007/s00044-011-9802-2Search in Google Scholar

[6] S. Saeed, D. N. Rashid, N. Ali, R. Hussain, P. G. Jones, Synthesis, spectroscopic characterization, crystal structure and pharmacological properties of some novel thiophene-thiourea core derivatives. Eur. J. Chem. 2010, 1, 221.10.5155/eurjchem.1.3.221-227.124Search in Google Scholar

[7] P. R. Kumar, S. Raju, P. S. Goud, M. Sailaja, M. R. Sarma, G. O. Reddy, M. P. Kumar, V. V. R. M. K. Reddy, T. Suresh, P. Hegde, Synthesis and biological evaluation of thiophene [3,2-b] pyrrole derivatives as potential anti-inflammatory agents. Bioorg. Med. Chem.2004, 12, 1221.10.1016/j.bmc.2003.11.003Search in Google Scholar

[8] S. K. Seth, V. S. Lee, J. Yana, S. M. Zain, A. C. Cunha, V. F. Ferreira, A. K. Jordão, M. C. B. V. de Souza, S. M. S. V. Wardell, J. L. Wardell, E. R. T. Tiekink, Crystallographic and computational study of 1-(arylamino)-1,2,3-triazole- 4-carbohydrazides. Cryst. Eng. Comm.2015, 17, 2255.10.1039/C4CE02175DSearch in Google Scholar

[9] M. V. N. de Souza, T. C. M. Noguiera, S. M. S. V. Wardel, J. L. Wardell, Crystal structures of (E)-2-(2-benzylidenehydrazinyl)quinoxalines: persistent N–H···N intermolecular hydrogen bonds but variable π···π interactions. Z. Kristallogr.2014, 229, 587.10.1515/zkri-2014-1769Search in Google Scholar

[10] F. A. R. Rodrigues, I. S. Bomfim, B. C. Cavalcanti, C. O. Pessoa, J. L. Wardell, S. M. S. V. Wardell, A. C. Pinheiro, C. R. Kaiser, T. C. M. Nogueira, J. N. Low, L. R. Gomes, M. V. N. de Souza, Design, synthesis and biological evaluation of (E)-2- (2-arylhydrazinyl)quinoxalines, a promising and potent new class of anticancer agents. Bioorg. Med. Chem. Letters2014, 24, 934.10.1016/j.bmcl.2013.12.074Search in Google Scholar PubMed

[11] M. V. N. de Souza, R. S. B. Goncalves, F. A. R. Rodrigues, B. C. Cavalcanti, I. da S. Bomfim, C. do Ó Pessoa, J. L. Wardell, S. M. S. V. Wardell, Mefloquine-oxazolidine derivatives, a new class of anticancer agents. Chem. Biol. Drug Des.2014, 83, 126.10.1111/cbdd.12210Search in Google Scholar

[12] E. B. Lindgren, J. D. Yoneda, K. Z. Leal, A. F. Nogueira, T. R. A. Vasconcelos, J. L. Wardell, S. M. S. V. Wardell, Structures of hydrazones, (E)-2-(1,3-benzothiazolyl)-NH-N=CHAr, [Ar=4-(pyridin-2-yl)phenyl, pyrrol-2-yl, thien-2-yl and furan-2-yl]: difference in conformations and intermolecular hydrogen bonding. J. Mol. Struct.2013, 1036, 19.10.1016/j.molstruc.2012.09.058Search in Google Scholar

[13] S. A. Carvalho, L. O. Feitosa, M. Soares, T. E. M. M. Costa, M. G. Henriques, K. Salomão, S. L. de Castro, M. Kaiser, R. Brun, J. L. Wardell, S. M. S. V. Wardell, G. H. G. Trossini, A. D. Andricopulo, E. F. da Silva and Carlos A. M. Fraga, Design and synthesis of new (E)-cinnamic N-acylhydrazones as potent antitrypanosomal agents. Eur. J. Med. Chem.2012, 54, 512.10.1016/j.ejmech.2012.05.041Search in Google Scholar

[14] R. S. B. Goncalves, C. R. Kaiser, M. C. S. Lourenco, F. A. F. M. Bezerra, M. V. N. de Souza, J. L. Wardell, S. M. S. V. Wardell, M. das G. M. de O. Henriques, T. Costa, Mefloquine-oxazolidine derivatives, derived from mefloquine and arenecarbaldehydes: In vitro activity including against the multidrug-resistant tuberculosis strain T113. Bioorg. Med. Chem.2012, 20, 243.10.1016/j.bmc.2011.11.006Search in Google Scholar

[15] M. de L. F. Bispo, C. C. de Alcantara, M. O. de Moraes, C. do O. Pessoa, F. A. R. Rodrigues, C. R. Kaiser, S. M. S. V. Wardell, J. L. Wardell, M. V. N. de Souza, A new and potent class of quinoline derivatives against cancer. Monatsh Chem.2015, 145, 2041.10.1007/s00706-015-1570-0Search in Google Scholar

[16] M. V. N. de Souza, M. de L. Ferreira, T. C. M. Nogueira, R. S. B. Goncalves, M. A. Peralta, M. C. S. Lourenco, F. R. Vicente, Synthesis and biological evaluation of N-(Alkyl)-2-thiophen-2-yl acetamide Series As a new class of antitubercular agents. Lett. Drug Des. Discov.2008, 5, 221.10.2174/157018008784083965Search in Google Scholar

[17] M. V. N. de Souza, M. C. S. Lourenço, M. A. Peralta, R. S. B. Gonçalves, T. C. M. Nogueira, C. H. da S. Lima, M. de L. Ferreira, E. T. da Silva, Synthesis and biological evaluation of N,N′-di(thiopheneacetyl)diamines series as antitubercular agents. Phophorus Sulfur.2008, 12, 2990.10.1080/10426500802049803Search in Google Scholar

[18] M. C. S. Lourenço, F. R. Vicente, M. Graças, M. O. Henriques, A. L. P. Candéa, R. S. B. Gonçalves, T. C. M. Nogueira, M. de L. Ferreira, M. V. N. de Souza, Synthesis and biological evaluation of N-(aryl)-2-thiophen-2-ylacetamides series as a new class of antitubercular agents. Bioorg. Med. Chem. Lett.2007, 17, 6895.10.1016/j.bmcl.2007.09.096Search in Google Scholar

[19] L. N. F. Cardoso, M. L. F. Bispo, C. R. Kaiser, J. L Wardell, S. M. S. V. Wardell, M. C. S. Lourenco, F. A. F. M. Bezerra, R. P. P. Soares, M. N. Rocha, M. V. N. de Souza, Anti-tuberculosis evaluation and conformational study of N-acylhydrazones containing the thiophene nucleus. Arch. Pharm.2014, 347, 432.10.1002/ardp.201300417Search in Google Scholar

[20] A. L. Spek, Single-crystal structure validation with the program PLATON. J. Appl. Crystallogr.2003, 36, 7.10.1107/S0021889802022112Search in Google Scholar

[21] R. E. Marsh, V. Schomakera. F. H. Herbstein, Arrays with local centers of symmetry in space groups Pca21 and Pna21. Acta Crystallogr.1998, B54, 921.10.1107/S0108768198007381Search in Google Scholar

[22] G. R. Desiraju, Crystal engineering: a holistic view. Angew. Chem., Int. Ed.2007, 46, 8342.10.1002/anie.200700534Search in Google Scholar

[23] L. Huang, L. Massa, J. Karle, J. Calculated interactions of a nitro group with aromatic rings of crystalline picryl bromide. J. Proc. Natl. Acad. Sci.2008, 105, 13720.10.1073/pnas.0807218105Search in Google Scholar

[24] J. Bernstein, R. E. Davis, L. Shimoni, N. L. Chang, Patterns in hydrogen bonding: functionality and graph set analysis in crystals. Angew. Chem. Int. Ed. Engl.1995, 34, 1555.10.1002/anie.199515551Search in Google Scholar

[25] E. R. T. Tiekink, Crystal engineering, in Supramolecular Chemistry: from Molecules to Nanomaterials, (Eds. J. W. Steed and P. A. Gale) John Wiley & Sons Ltd, Chichester, UK, p. 2791, 2012.Search in Google Scholar

[26] CrystalClear-SM Expert. Rigaku Corporation, Tokyo, Japan, 2011.Search in Google Scholar

[27] G. M. Sheldrick, SADABS Version 2007/2, Bruker AXS Inc., Madison, Wisconsin, 2007.Search in Google Scholar

[28] Mercury 3.3.1 Cambridge Crystallographic Data Centre, UK.Search in Google Scholar

[29] L. J. Farrugia, ORTEP-3 for Windows – a version of ORTEP-III with a Graphical User Interface (GUI). J. Appl. Crystallogr.1997, 30, 565.10.1107/S0021889897003117Search in Google Scholar

[30] G. M. Sheldrick, A short history of SHELX. Acta Crystallogr.2008, A64, 112.10.1107/S0108767307043930Search in Google Scholar


Supplemental Material:

The online version of this article (DOI: 10.1515/zkri-2015-1902) offers supplementary material, available to authorized users.


Received: 2015-10-5
Accepted: 2015-11-17
Published Online: 2015-12-16
Published in Print: 2016-3-1

©2016 by De Gruyter

Downloaded on 30.9.2025 from https://www.degruyterbrill.com/document/doi/10.1515/zkri-2015-1902/html
Scroll to top button