Rarity and conservation status of the Colombian Speckled Tree Rat, Pattonomys semivillosus (I. Geoffroy, 1838)
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Julio J. Chacón-Pacheco
, Julián Lozano-Flórez
, Luis Jose Avendaño-Maldonado
, Javier Racero-Casarrubia
, Laura Montoya-Patiño
and Héctor Emilio Ramírez-Chaves
Abstract
The Colombian Speckled Tree Rat, Pattonomys semivillosus, is a little-known rodent endemic to the Lower Magdalena River basin at the Caribbean Coast of Colombia. To date it is the only species of Pattonomys documented in the country. We provide information on the rarity, and conservation status of P. semivillosus based on the current and potential distribution, population density and size using information from the literature, new records, and museum vouchers. We confirmed 66 occurrences that belong to 25 localities in six departments (Atlántico, Bolívar, Cesar, La Guajira, Magdalena, Santander, and Sucre) in northern Colombia, including 18 new localities not previously reported in the literature, mostly in the highly threatened Tropical Dry Forest ecosystem. The population density in three sites of Department of Cesar was 5.4 ind/km2, 5.9 ind/km2, and 32.4 ind/km2. The species matches with the Category D of rarity, and we suggest an update to the threatened assessment (from Least Concern to Near Threatened). This information will contribute to update the current IUCN assessment of the species.
Acknowledgments
We thank the company Prodeco S. A. S and Fundación para la Investigación y el Manejo de los Recursos Hidrobiológicos de la Región Caribe Colombiana George Dahl for facilitating the use of information resulting from rescue activities in mining advance processes in the Department of Cesar, Colombia. Jefferson Sánchez Castrillón, Fernando Rondón and Giovani Brigante-Luna for providing records and photographs of the species. Guillaume Laugier, Edgar Patiño and Mara Espinosa for his review and comments on the manuscript. Catalina Cárdenas provided information of some specimens from Instituto de Ciencias Naturales, Bogotá.
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Author contributions: Julio Chacón-Pacheco carried out conceptualization, methodology, data curation, formal analysis, investigation and writing–original draft preparation of the paper. Julian Lozano-Flórez was involved in conceptualization, methodology and writing–reviewing of the paper. Luis J. Avendaño-Maldonado and Laura Montoya-Patiño carried out investigation in field. Javier Racero-Casarrubia contributed to conceptualization and investigation. Héctor Ramírez-Chaves was involved in conceptualization, methodology, formal analysis, supervision and writing–reviewing and editing of the paper.
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Research funding: Not applicable.
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Conflict of interest statement: The authors declare no conflicts of interest regarding this article.
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Research ethics: All the methods used in this study follow the ethical guidelines established by the American Society of Mammalogists for specimens management and transport (Sikes and The Animal Care and Use Committee of the American Society of Mammalogists 2016). No sacrifice or mistreatment of animals handled in the field was incurred.
References
Aguilera, M. (2016). Pattonomys semivillosus. The IUCN red list of threatened species 2016: e.T90386452A22212633. Available at: https://doi.org/10.2305/IUCN.UK.2016-2.RLTS.T90386452A22212633.en.Search in Google Scholar
Aguilera-Díaz, M.M. (2005). La economía del Departamento de Sucre: ganadería y sector público. In: Aguilera-Díaz, M.M. (Ed.). Documentos de Trabajo Sobre Economía Regional y Urbana N° 63. Banco de la República, Cartagena de Indias, D. T. y C.10.32468/dtseru.63Search in Google Scholar
Bachman, S., Moat, J., Hill, A.W., La Torre, J. De, and Scott, B. (2011). Supporting red list threat assessments with GeoCAT: geospatial conservation assessment tool. ZooKeys 150: 117–126, https://doi.org/10.3897/zookeys.150.2109.Search in Google Scholar PubMed PubMed Central
Ballesteros-Correa, J., Morelo-García, L., and Pérez-Torres, J. (2019). Composición y estructura vegetal de fragmentos de bosque seco tropical en paisajes de ganadería extensiva bajo manejo silvopastoril y convencional en Córdoba, Colombia. Caldasia 41: 224–234, https://doi.org/10.15446/caldasia.v41n1.71320.Search in Google Scholar
Barve, N., Barve, V., Jiménez-Valverde, A., Lira-Noriega, A., Peterson, S.P., Soberón, J., and Villalobos, F. (2011). The crucial role of the accessible area in ecological niche modeling and species distribution modeling. Ecol. Modell. 222: 1810–1819, https://doi.org/10.1016/j.ecolmodel.2011.02.011.Search in Google Scholar
Burnham, K.P., Anderson, D.R., and Huyvaert, K.P. (2011). AIC model selection and multimodel inference in behavioral ecology: some background, observations, and comparisons. Behav. Ecol. Sociobiol. 65: 23–35, https://doi.org/10.1007/s00265-010-1029-6.Search in Google Scholar
Cobos, M.E., Peterson, A.T., Barve, N., and Osorio-olvera, L. (2019). kuenm: an R package for detailed development of ecological niche models using Maxent. PeerJ 77: 1–15, https://doi.org/10.7717/peerj.6281.Search in Google Scholar PubMed PubMed Central
Emmons, L.H. (2005). A revision of the genera of arboreal Echimyidae. In: Lacey, E. and Myers, P. (Eds.). Mammalian diversification: from chromosomes to phylogeography. University of California Press, Chicago, p. 247.10.1525/california/9780520098534.003.0009Search in Google Scholar
Emmons, L.H. and Fabre, P.H. (2018). A review of the pattonomys/toromys clade (Rodentia: Echimyidae), with descriptions of a new toromys species and a new genus. Am. Mus. Novit. 3894: 1–52, https://doi.org/10.1206/3894.1.Search in Google Scholar
Emmons, L.H. and Feer, F. (1997). Neotropical rainforest mammals. A field guide. University of Chicago Press, Chicago.Search in Google Scholar
Emmons, L.H. and Patton, J.L. (2015). Genus Pattonomys. In: Patton, J.L., Paridas, U., and D’Elía, G. (Eds.). Mammals of South America. The University of Chicago Press, Chicago, pp. 910–915.Search in Google Scholar
Escobar, L.E., Medina-Vogel, G., and Peterson, A.T. (2014). Potential for spread of the white-nose fungus (Pseudogymnoascus destructans) in the Americas: use of Maxent and NicheA to assure strict model transference. Geospatial Health 9: 221–229, https://doi.org/10.4081/gh.2014.19.Search in Google Scholar PubMed
Etter, A., Andrade, A., Saavedra, K., Amaya, P., and Arévalo, P. (2017). Estado de los ecosistemas Colombianos: una aplicación de la metodología de la Lista Roja de ecosistemas (Vers2. 0). Informe Final. Pontificia Universidad Javeriana y Conservación Internacional Colombia, Bogotá DC, p. 108.Search in Google Scholar
Fabre, P.H., Patton, J.L., and Leite, Y. (2016). Family Echimyidae. In: Wilson, D.E., Lacher Jr, T.E., and Mittermeier, R.A. (Eds.). Handbook of the mammals of the world, Vol. 6. Lagomorphs and Rodents 1. Lynxs Edicions, Barcelona.Search in Google Scholar
Fick, S.E. and Hijmans, R.J. (2017). WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas. Int. J. Climatol. 37: 4302–4315, https://doi.org/10.1002/joc.5086.Search in Google Scholar
GBIF.org. (2021a). GBIF occurrence. Global biodiversity information facility, Available at: <https://doi.org/10.15468/dl.9g4yvs>(Accessed 12 January 2021).Search in Google Scholar
GBIF.org. (2021b). GBIF occurrence. Global biodiversity information facility, Available at: <https://doi.org/10.15468/dl.umke3x>(Accessed 5 February 2021).Search in Google Scholar
Hansen, M.C., Potapov, P.V., Moore, R., Hancher, M., Turubanova, S.A., Tyukavina, A., Thau, D., Stehman, S.V., Goetz, S.J., and Loveland, T.R. (2013). High-resolution global maps of 21st-century forest cover change. Science 342: 850–853, https://doi.org/10.1126/science.1244693.Search in Google Scholar PubMed
Hershkovitz, P. (1948). Mammals of northern Colombia: spiny rats (Echimyidae). Proc. U. S. Natl. Mus. 97: 125–140, https://doi.org/10.5479/si.00963801.3214.125.Search in Google Scholar
José, H., Macedo, I., and Loss, M.C. (2019). A new and simple method to capture small arboreal mammals: the suspended pitfall. Rev. Bras. Zoociencias 20: 1–14, https://doi.org/10.34019/2596-3325.2019.v20.24790.Search in Google Scholar
Linares, O. (1998). Mamiferos de Venezuela. Sociedad Conservacionista Audubon de Venezuela, Caracas, Venezuela.Search in Google Scholar
Mejía-Correa, S. (2018). Nuevos registros e historia natural de Pattonomys semivillosus (I. Geoffroy, 1838) (Rodentia: Echimyidae) en relictos de bosque seco tropical de los departamentos de Bolívar y Atlántico, Colombia. Mammalogy Notes 5: 12–14, https://doi.org/10.47603/manovol5n1.12-14.Search in Google Scholar
Muscarella, R., Galante, P.J., Soley-Guardia, M., Boria, R.A., Kass, J.M., Uriarte, M., and Anderson, R.P. (2014). ENMeval: an R package for conducting spatially independent evaluations and estimating optimal model complexity for Maxent ecological niche models. Methods Ecol. Evol. 5: 1198–1205, https://doi.org/10.1111/2041-210x.12261.Search in Google Scholar
Olson, D.M., Dinerstein, E., Wikramanayake, E.D., Burgess, N.D., Powell, G.V.N., Underwood, E.C., D’Amico, J.A., Itoua, I., Strand, H.E., Morrison, J.C., et al.. (2001). Terrestrial ecoregions of the world: a new map of life on Earth. Bioscience 51: 933–938, https://doi.org/10.1641/0006-3568(2001)051[0933:teotwa]2.0.co;2.10.1641/0006-3568(2001)051[0933:TEOTWA]2.0.CO;2Search in Google Scholar
Patiño, L. (2019). Análisis del patrón de distribución de los caviomorpha de Colombia. Pontificia Universidad Javeriana, Bogotá, Colombia.Search in Google Scholar
Peterson, A.T., Papes, M., and Soberón, J. (2008). Rethinking receiver operating characteristic analysis applications in ecological niche modeling. Ecol. Modell. 213: 63–72, https://doi.org/10.1016/j.ecolmodel.2007.11.008.Search in Google Scholar
Peterson, A.T., Soberón, J., Pearson, R.G., Anderson, R.P., Martínez-Meyer, E., Nakamura, M., and Araújo, M.B. (2011). Ecological niches and geographic distributions. Princeton University Press, New Jersey.10.23943/princeton/9780691136868.003.0003Search in Google Scholar
Phillips, S.J., Anderson, R.P., and Schapire, R.E. (2006). Maximum entropy modeling of species geographic distributions. Ecol. Modell. 190: 231–259, https://doi.org/10.1016/j.ecolmodel.2005.03.026.Search in Google Scholar
Pizano, C. and García, H. (2014). El bosque seco tropical en Colombia. Instituto de investigación de recursos biológicos Alexander von Humboldt (IAvH), Bogotá, D.C.Search in Google Scholar
Radosavljevic, A. and Anderson, R.P. (2014). Making better Maxent models of species distributions: complexity, overfitting and evaluation. J. Biogeogr. 41: 629–643, https://doi.org/10.1111/jbi.12227.Search in Google Scholar
Soberon, J. and Peterson, A.T. (2005). Interpretation of models of fundamental ecological niches and species’ distributional areas. Biodivers. Inf. 2: 1–10, https://doi.org/10.17161/bi.v2i0.4.Search in Google Scholar
Solari, S., Munoz-Saba, Y., Rodriguez-Mahecha, J.V., Defler, T.R., Ramirez-Chaves, H.E., and Trujillo, F. (2013). Riqueza, endemismo y conservacion de los mamiferos de Colombia. Mastozool. Neotrop. 20: 301–365.Search in Google Scholar
Teta, P., Quiroga-Carmona, M., and D’Elía, G. (2021). Imperiled or not? Characterizing the non-charismatic and data deficient South American rodents. In: Dellasala, D.A., and Goldstein, M.I. (eds). Imperiled: The Encyclopedia of Conservation. Elsevier, Oxford, U.K., pp. 519–528, https://doi.org/10.1016/B978-0-12-821139-7.00049-0.Search in Google Scholar
Toro, J.L. (2021). Inventario de fauna presente en la jurisdicción de Corantioquia. Version 4.7. Corantioquia – Corporación Autónoma Regional del Centro de Antioquia, Available at: <https://www.gbif.org/occurrence/730253796> (Accessed 28 June 2021).Search in Google Scholar
Yu, J. and Dobson, F.S. (2000). Seven forms of rarity in mammals. J. Biogeogr. 27: 131–139, https://doi.org/10.1046/j.1365-2699.2000.00366.x.Search in Google Scholar
Supplementary Material
The online version of this article offers supplementary material (https://doi.org/10.1515/mammalia-2022-0070).
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Articles in the same Issue
- Frontmatter
- Biogeography
- Biogeography and conservation of desert warthog Phacochoerus aethiopicus and common warthog Phacochoerus africanus (Artiodactyla: Suidae) in the Horn of Africa
- How far westward? Revisiting the distribution of Arctonyx badgers in the westernmost global range
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- Ecology
- Trophic structure and foraging strategies in a bat community in northern Pantanal, Brazil
- “Brown hare never goes underground”: the exception that proves the rule
- New records of the rare bushy-tailed opossum, Glironia venusta Thomas, 1912 (Didelphimorphia), in Brazil, with notes on the species’ diet
- First records of albinism and leucism in Ctenodactylus gundi (Rodentia: Ctenodactylidae)
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- Taxonomic reassessment of the chaco mice of the genus Andalgalomys Williams and Mares, 1978 (Rodentia, cricetidae) with a redefinition of Andalgalomys olrogi Williams and Mares, 1978
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