Home The crystal structure of 2-nitroisophthalic acid, C8H5NO6
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The crystal structure of 2-nitroisophthalic acid, C8H5NO6

  • Shu-Jing Li ORCID logo EMAIL logo , Ke Li and Yi-Wen Li
Published/Copyright: December 5, 2019

Abstract

C8H5NO6, monoclinic, C2/c (no. 15), a = 5.4755(12) Å, b = 14.377(3) Å, c = 11.143(3) Å, β = 99.096(9)°, V = 866.2(3) Å3, Z = 4, Rgt(F) = 0.0455, wRref(F2) = 0.1341, T = 150(2) K.

CCDC no.: 1964554

The molecular structure is shown in the figure (only the asymmetric unit is labelled). Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colorless block
Size:0.35 × 0.10 × 0.07 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.14 mm−1
Diffractometer, scan mode:Bruker APEX-II, φ and ω
θmax, completeness:26.0°, >99%
N(hkl)measured, N(hkl)unique, Rint:4377, 857, 0.060
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 599
N(param)refined:71
Programs:Bruker [1], SHELX [2],
Olex2 [3], [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
C10.50.7574(2)0.250.0325(10)
H10.50.8234(2)0.250.0391(11)*
C20.3545(5)0.70918(16)0.3198(2)0.0246(6)
H20.2539(5)0.74270(16)0.3669(2)0.0295(7)*
C30.3534(4)0.61252(15)0.3221(2)0.0182(6)
C40.2000(4)0.56172(15)0.39952(19)0.0162(5)
C50.50.5658(2)0.250.0146(7)
N10.50.46333(17)0.250.0165(6)
O10.2212(3)0.47870(10)0.42006(15)0.0223(5)
O20.0421(3)0.61606(11)0.44293(15)0.0231(5)
H2a−0.042(3)0.5844(4)0.485(2)0.0346(7)*
O30.3335(3)0.42440(11)0.18248(15)0.0250(5)

Source of material

All of starting materials were purchased from commercial sources and used as received. The title compound was synthesized in THF solution: solid 2-nitroisophthalic acid (2.11 g, 0.01 mol) was dissolved in 10 mL THF solution in a beaker equipped with a stirrer and stirred at room temperature for 5 min. Then the solution was filtered and let evaporate slowly at room temperature in air. Colorless single crystals were obtained after 12 hours, yield: 93.4% (based on 2-nitroisophthalic acid).

Experimental details

The structure was solved by direct methods with the SHELXS program. All H-atoms from C atoms and O atoms were positioned with idealized geometry and refined isotropically (Uiso(H) = 1.2Ueq(C) or Uiso(H) = 1.5Ueq(O)) using a riding model with C—H = 0.95 Å and O—H = 0.84 Å, respectively.

Comment

Some 4- and 5-nitroisophthalic acids or their analogues have been reported [5], [6], [7], [8]. However, no structural result have been reported for 2-nitroisophthalic acid or 2-nitroisophthalate. To the best of our knowledge, only one crystal strucure of an analogue of 2-nitroisophthalic acid, bis(2,2,2-trinitroethyl) 2,4,6-trinitroisophthalate, has been reported elsewhere [9].

As shown in the figure, there is a two-fold axis along the direction of the line of H1—C1—C5—N1. All of the atoms except the two O atoms from the nitro group are co-planar. The plane defined by the three atoms of the nitro group is almost perpendicular to the plane of benzene ring (∼96°). There are hydrogen bonds: O—H⋯O(carboxyl). The carboxyl groups are linked to generate one-dimensional chains by the strong O—H⋯O(carboxyl)-type of hydrogen bond. All bond lengths and angles of the 2-nitroisophthalic acid are comparable to that reported in the literature [9].

References

1. Bruker. SAINT v8.37A. Bruker AXS Inc, Madison, WI, USA (2015).Search in Google Scholar

2. Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. A64 (2008) 112–122.10.1107/S0108767307043930Search in Google Scholar PubMed

3. Bourhis, L. J.; Dolomanov, O. V.; Gildea, R. J.; Howard, J. A. K.; Puschmann, H.: The anatomy of a comprehensive constrained, restrained refinement program for the modern computing environment-Olex2 dissected. Acta Crystallogr. A71 (2015) 59–75.10.1107/S2053273314022207Search in Google Scholar

4. Dolomanov, O. V.; Bourhis, L. J.; Gildea, R. J.; Howard, J. A. K.; Puschmann, H.: OLEX2: a complete structure solution, refinement and analysis program. J. Appl. Crystallogr. 42 (2009) 339–341.10.1107/S0021889808042726Search in Google Scholar

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6. Luo, Y.-H.; Pan, M.-L.: 4-Nitroisophthalic acid. Acta Crystallogr. E68 (2012) o206.10.1107/S1600536811053797Search in Google Scholar PubMed PubMed Central

7. Saleh, M. I.; Tham, W.-T.; Adnan, R.; Kusrini, E.; Ng, S.-L.; Fun, H.-K.: A second orthorhombic polymorph of 5-nitroisophthalic acid monohydrate. Acta Crystallogr. E62 (2006) o4837–o4839.10.1107/S1600536806040062Search in Google Scholar

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Received: 2019-09-18
Accepted: 2019-11-08
Published Online: 2019-12-05
Published in Print: 2020-02-25

©2019 Shu-Jing Li et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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  79. The crystal structure of (Z)-3-hydrazono-5-nitroindolin-2-one – dimethyl sulfoxide (1/1), C8H6N4O3
  80. Crystal structure of bis-[N-(1-pyrazin-2-yl-ethylidene)-cyanoacetic acid-hydrazonato-κ3O,N,N′)]-zinc(II), C18H16N10O2Zn
  81. Crystal structure and photochromism of 1-(2,5-dimethyl-3-thienyl)-2-[2-methyl-5-(benzaldoxime)-3-thienyl] perfluorocyclopentene, C23H17F6NOS2
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