Startseite Crystal structure of 2-[[4-[2-[4-(4-methoxyphenyl)-1-piperazinyl]ethyl]phenyl] methyl]-1H-isoindole-1,3(2H)-dione, C28H29N3O3
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Crystal structure of 2-[[4-[2-[4-(4-methoxyphenyl)-1-piperazinyl]ethyl]phenyl] methyl]-1H-isoindole-1,3(2H)-dione, C28H29N3O3

  • Jinhui Zhou EMAIL logo , Cuicui Huang , Maojian Shi , Jing Liu und Lin Ding
Veröffentlicht/Copyright: 29. Mai 2018

Abstract

C28H29N3O3, triclinic, P1̄ (no. 2), a = 8.2887(3) Å, b = 14.1977(5) Å, c = 21.3385(7) Å, α = 107.142(3)°, β = 92.773(3)°, γ = 104.240(3)°, V = 2305.97(15) Å3, Z = 4, Rgt(F2) = 0.0555, wRref(F2) = 0.1620, T = 100(1) K.

CCDC no.: 1813333

Only one of the two crystallographically independent molecules of the title crystal structure is shown in the figure. Tables 1 and 2 contain details of the measurement method and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colorless block
Size:0.3 × 0.2 × 0.2 mm
Wavelength:Mo Kα radiation (1.54184 Å)
μ:0.69 mm−1
Diffractometer, scan mode:SuperNova, φ and ω-scans
2θmax, completeness:74°, >99%
N(hkl)measured, N(hkl)unique, Rint:15990, 8992, 0.034
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 7757
N(param)refined:688
Programs:CrysAlisPRO [1], SHELX [2]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
O1A0.94578(14)−0.38365(8)0.02709(5)0.0249(3)
O2A0.7976(2)0.87148(10)0.35045(7)0.0473(4)
O3A1.18938(14)0.85538(9)0.50192(6)0.0299(3)
N1A0.94977(16)0.02636(10)0.14359(7)0.0237(3)
N2Aa1.0795(5)0.2456(3)0.1826(2)0.0207(8)
N2A′b1.0341(6)0.2445(4)0.2027(2)0.0210(9)
N3A1.01801(18)0.85778(10)0.41402(7)0.0272(3)
C11′b0.9195(10)0.1917(7)0.1408(4)0.0244(14)
H11Cb0.92620.23820.11380.029*
H11Db0.80270.17320.15090.029*
C1A0.8588(2)−0.43917(12)−0.03772(8)0.0303(4)
H1AA0.9023−0.4030−0.06860.045*
H1AB0.7387−0.4448−0.03740.045*
H1AC0.8758−0.5079−0.05170.045*
C9′b1.0179(15)0.1794(11)0.2448(6)0.0255(18)
H9′Ab0.90200.16340.25620.031*
H9′Bb1.09640.21440.28630.031*
C2A0.94081(19)−0.28391(11)0.05288(7)0.0204(3)
C19′b0.9713(15)0.5926(8)0.2262(6)0.0229(17)
H19′b0.90740.56880.18370.027*
C3A0.8420(2)−0.23776(11)0.02391(8)0.0230(3)
H3A0.7714−0.2758−0.01660.028*
C15′b1.1387(16)0.5655(11)0.3111(6)0.0236(18)
H15′b1.18930.52150.32610.028*
C4A0.8467(2)−0.13597(12)0.05431(8)0.0234(3)
H4A0.7775−0.10570.03430.028*
C5A0.95057(18)−0.07668(11)0.11366(8)0.0207(3)
C6A1.0476(2)−0.12532(12)0.14237(8)0.0231(3)
H6A1.1188−0.08760.18280.028*
C7A1.0411(2)−0.22761(12)0.11260(8)0.0235(3)
H7A1.1061−0.25930.13330.028*
C8A1.0596(2)0.08108(12)0.20599(8)0.0267(3)
H8AAa1.17750.08280.19940.032*
H8ABa1.02770.04590.23910.032*
H8ACb1.17730.09840.19680.032*
H8ADb1.05040.03540.23360.032*
C9Aa1.0418(14)0.1900(9)0.2304(5)0.0226(19)
H9AAa0.92550.18720.24030.027*
H9ABa1.11830.22830.27210.027*
C10A0.9680(2)0.08854(12)0.09916(9)0.0340(4)
H10Aa1.07810.09070.08280.041*
H10Ba0.88070.05230.06040.041*
H10Cb0.89070.05240.05740.041*
H10Db1.08460.10520.08870.041*
C11Aa0.9572(9)0.1921(6)0.1245(4)0.0263(13)
H11Aa0.84300.19240.13600.032*
H11Ba0.97970.22670.09050.032*
C12Aa1.1014(4)0.3553(2)0.20940(14)0.0215(8)
H12Aa1.13660.38590.17440.026*
H12Ba1.19540.38330.24600.026*
C12′b0.9921(4)0.3393(3)0.23905(16)0.0224(9)
H12Cb1.05700.36750.28380.027*
H12Db0.87140.32250.24430.027*
C13Aa0.9512(4)0.3926(3)0.23565(17)0.0271(9)
H13Aa0.85880.37170.19900.032*
H13Ba0.91000.36090.26950.032*
C13′b1.0291(4)0.4204(2)0.20484(16)0.0218(9)
H13Cb1.13550.41960.18580.026*
H13Db0.93880.40200.16770.026*
C14Aa1.0034(6)0.5084(4)0.2658(3)0.0235(9)
C14′b1.0435(6)0.5282(4)0.2490(3)0.0193(10)
C15Aa1.1130(14)0.5582(10)0.3253(5)0.0237(15)
H15Aa1.15450.51880.34800.028*
C16A1.16131(19)0.66520(12)0.35148(8)0.0252(3)
H16Aa1.24360.69660.38940.030*
H16Bb1.21920.68950.39510.030*
C17A1.0946(2)0.72792(12)0.32459(8)0.0254(3)
C18A0.9932(2)0.68498(14)0.26392(8)0.0299(4)
H18Aa0.95390.72570.24170.036*
H18Bb0.93630.72680.24940.036*
C19Aa0.9496(14)0.5703(7)0.2356(5)0.0267(17)
H19Aa0.88050.53860.19410.032*
C20A1.1281(2)0.84018(13)0.36258(9)0.0313(4)
H20A1.24660.86750.38330.038*
H20B1.11070.87780.33160.038*
C21A1.0573(2)0.86139(11)0.47903(8)0.0246(3)
C22A0.9060(2)0.87468(11)0.51214(9)0.0265(4)
C23A0.7877(2)0.88043(12)0.46622(9)0.0323(4)
C24A0.8588(2)0.86972(12)0.40250(9)0.0328(4)
C25A0.6336(2)0.89313(13)0.48208(11)0.0395(5)
H25A0.55350.89760.45050.047*
C26A0.6000(2)0.89916(13)0.54612(11)0.0412(5)
H26A0.49470.90780.55860.049*
C27A0.7182(2)0.89271(12)0.59240(10)0.0365(4)
H27A0.69190.89670.63580.044*
C28A0.8743(2)0.88050(12)0.57597(9)0.0297(4)
H28A0.95540.87640.60730.036*
O1B0.56914(15)0.12963(8)0.02880(6)0.0291(3)
O2B0.32758(16)1.37770(9)0.35041(6)0.0342(3)
O3B0.71048(14)1.35501(8)0.50275(6)0.0266(3)
N1B0.50624(17)0.52587(10)0.14323(6)0.0230(3)
N2B0.54660(16)0.73918(10)0.20929(6)0.0236(3)
N3B0.54339(17)1.35925(9)0.41422(6)0.0227(3)
C1B0.6537(2)0.10623(12)−0.02816(9)0.0318(4)
H1BA0.60850.1303−0.06200.048*
H1BB0.63660.0320−0.04570.048*
H1BC0.77400.1404−0.01590.048*
C2B0.5687(2)0.22982(12)0.05615(8)0.0238(3)
C3B0.4727(2)0.24935(12)0.10800(8)0.0265(3)
H3B0.41670.19470.12290.032*
C4B0.4577(2)0.34620(12)0.13785(8)0.0262(3)
H4B0.39180.35740.17310.031*
C5B0.53832(19)0.42921(11)0.11704(8)0.0221(3)
C6B0.6544(2)0.31085(12)0.03646(8)0.0247(3)
H6B0.72320.29960.00220.030*
C7B0.6394(2)0.40946(12)0.06723(8)0.0241(3)
H7B0.70010.46460.05370.029*
C8B0.5154(2)0.56668(12)0.21542(8)0.0247(3)
H8BA0.63300.58350.23580.030*
H8BB0.44630.51380.23190.030*
C9B0.4535(2)0.66164(13)0.23565(8)0.0272(3)
H9BA0.33270.64350.21910.033*
H9BB0.46680.68950.28450.033*
C10B0.5867(2)0.60463(11)0.11490(8)0.0239(3)
H10E0.56570.57630.06600.029*
H10F0.70950.62500.12830.029*
C11B0.5207(2)0.69801(12)0.13750(8)0.0256(3)
H11E0.57970.75090.11870.031*
H11F0.39940.67900.12130.031*
C12B0.5018(2)0.83553(12)0.23444(8)0.0269(4)
H12E0.50860.85520.28320.032*
H12F0.38450.82600.21640.032*
C13B0.6177(2)0.92125(12)0.21539(8)0.0296(4)
H13E0.73430.91620.22090.035*
H13F0.58650.91090.16800.035*
C14B0.6133(2)1.02780(13)0.25517(8)0.0285(4)
C15B0.6892(2)1.07132(13)0.32061(9)0.0315(4)
H15B0.73311.03080.34160.038*
C16B0.7020(2)1.17229(13)0.35566(8)0.0286(4)
H16C0.75671.20070.39990.034*
C17B0.6351(2)1.23266(12)0.32645(8)0.0252(3)
C18B0.5519(2)1.18875(13)0.26246(8)0.0296(4)
H18C0.50101.22800.24270.036*
C19B0.5424(2)1.08763(13)0.22695(8)0.0308(4)
H19B0.48681.05900.18290.037*
C20B0.6566(2)1.34422(12)0.36389(8)0.0256(3)
H20C0.77401.37560.38550.031*
H20D0.63591.38000.33220.031*
C21B0.58003(19)1.36151(11)0.47926(8)0.0212(3)
C22B0.42716(19)1.37450(11)0.51130(8)0.0228(3)
C23B0.3107(2)1.38106(11)0.46484(8)0.0248(3)
C24B0.3856(2)1.37274(11)0.40207(8)0.0251(3)
C25B0.1554(2)1.39275(12)0.47970(10)0.0306(4)
H25B0.07641.39750.44780.037*
C26B0.1191(2)1.39735(12)0.54339(10)0.0331(4)
H26B0.01271.40470.55510.040*
C27B0.2358(2)1.39136(12)0.59014(9)0.0316(4)
H27B0.20791.39510.63330.038*
C28B0.3931(2)1.38002(11)0.57477(8)0.0262(3)
H28B0.47341.37630.60660.031*
  1. aOccupancies: a = 0.524(5), b = 0.476(5).

Source of material

In the mixture of 2-(4-((1,3-dioxoisoindolin-2-yl)methyl)phenyl)ethyl-4-methylbenzenesulfonate (217.8 mg, 0.5 mmol), 50 mL EtOH and KOH (112.2 mg, 2.0 mmol), 1-(4-methoxyphenyl)piperazine (105.7 mg, 0.55 mmol) was added at ambient temperature. The reaction mixture was stirred and refluxed for 4 h, until TLC indicated the end of reaction. Then, the solvent was removed under reduced pressure, and the residue was extracted with CH2Cl2 (100 mL, 3 times). The combined organic layer was successively washed with water, brine, dried over anhydrous sodium sulfate, and concentrated in vacuo. The residue was purified by silica gel column chromatography using ethyl acetate/petroleum ether (1:8, v/v) as the eluent, finally the title compound (a white solid) was afforded.

Experimental details

All H atoms were placed in geometrically idealized positions and refined using a riding model, with C—H = 0.99 (methylene), 0.95 Å (benzene), and with Uiso(H) = 1.2Ueq(C) for H atoms on methylene an benzene. The hydrogens on terminal methyls were constrained with C—H = 0.98 Å and Uiso(H) = 1.5Ueq(C). One of the two crystallographically independent molecules show a disorder of the C2H4 moiety.

Discussion

The arylpiperazine structure is an important pharmacophore that has wide pharmacological activities [3], [4]. Naftopidil is a derivative of arylpiperazine ether and a specific antagonist targeted for the adrenergic receptor [5], which has already been regarded as one of the most commonly utilized antagonists targeted for the adrenergic receptor to treat the benign prostatic hyperplasia (BPH) in Japan [6]. The arylpiperazine derivative mentioned in this paper is a subselective antagonist for BPH [7].

The asymmetric unit contains two independent molecules. The title compound contained three benzene rings, one piperazine ring and a pyrrole ring. In molecule A, the link part between the piperazine ring and the benzene ring was refined with a disorder model. The conformations of the two crystallographically independent molecules were similiar but not the same. In molecule B, ring (C22B—C28B) and ring (C21B—C22B—C23B—C24B—N3B) are coplanar. The dihedral angles made by the planes of (C21B—C22B—C23B—C24B—N3B) and (C14B—C19B), (C21B—C22B—C23B—C24B—N3B) and (N1B—C8B—C9B—N2B—C11B—N10B), (C21B—C22B—C23B—C24B—N3B) and (C2B—C7B) are 66.81(6)°, 68.36(5)° and 75.76(5)°, respectively. In molecule B, the dihedral angles made by the planes of (C21A—C22A—C23A—C24A—N3A) and (C14A—C19A), (C21A—C22A—C23A—C24A—N3A) and (N1A—C8A—C9A—N2A—C11A—N10A), (C21A—C22A—C23A—C24A—N3A) and (C2A—C7A) are 79.63(12)°, 80.33(14)° and 67.80(5)°, respectively. The packing of the title structure shows no classical hydrogen bonds. π–π interactions were observed between ring (C22A—C28A) and ringi (C22B—C28B) with symmetry code (i) 1 − x, 2 − y, 1 − z.

Acknowledgements

This project was supported by the Natural Science Foundation of Shandong Province, China (No. ZR2011HL003).

References

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Received: 2018-01-26
Accepted: 2018-05-09
Published Online: 2018-05-29
Published in Print: 2018-07-26

©2018 Jinhui Zhou et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

Artikel in diesem Heft

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  32. Crystal structure of 1-phenyl-N′-(1-phenyl-5-(thiophen-2-yl)-1H-pyrazole-3-carbonyl)-5-(thiophen-2-yl)-1H-pyrazole-3-carbohydrazide, C28H20N6O2S2
  33. The crystal structure of poly[bis(4-hydroxybenzoato-κO)-(μ2-4,4′-bipyridine-κ2N:N′)copper(II)] hydrate, C24H20N2O7Cu
  34. Crystal structure of poly[μ3-5-(4-(2,6-di(pyridine-2-yl)pyridine-4-yl)phenoxy)isophthalato-κ5O:O′,O′′:N,N′,N′′cobalt(II)], C29H17CoN3O5
  35. Crystal structure of poly[μ3-5-(4-(2,6-di(pyridine-2-yl)pyridine-4-yl)phenoxy)isophthalato-κ6O:O′,O′′:N,N′,N′′)cobalt(II)] C29H17CoN3O5
  36. Crystal structure of diaqua-(acetato-κ3O,O′:O′′)-(μ3-4,6-di(1H-imidazol-1-yl)isophthalato-κ4O:O′:O′′,O′′′)lanthanum(III), C16H15LaN4O8
  37. Synthesis and crystal structure of 6-carboxy-1-(3,5-dicarboxyphenyl)-1H-benzo[d]imidazol-3-ium-5-carboxylate dihydrate, C18H12N2O8
  38. Crystal structure of (E)-2-hydroxybenzaldehyde O-(2-(((E)-(4-(dimethylamino)benzylidene)amino)oxy)ethyl)oxime, C18H21N3O3
  39. Crystal structure of bis{2-((E)-((4-((E)-1-(methoxyimino)ethyl)phenyl)imino)methyl)phenolato-κ2N,O}zinc(II), C32H30N4O4Zn
  40. Crystal structure of bis(9-aminoacridin-10-ium) tetrachloridocuprate(II) monohydrate, C26H24Cl4CuN4O
  41. The crystal structure of 4-tert-butyl-N′-[(E)-(4-fluoro-3-methoxyphenyl)methylidene]benzohydrazide, C19H21F1N2O2
  42. Crystal structure of (E)-3-(3-(5-methyl-1-4-tolyl-1H-1,2,3-triazol-4-yl)-1-phenyl-1H-pyrazol-4-yl)-1-(5-methyl-1-phenyl-1H-1,2,3-triazol-4-yl)prop-2-en-1-one, C31H26N8O
  43. Crystal structure of (E)-N′-(4-methoxybenzylidene)-5-methyl-1-(4-tolyl)-1H-1,2,3-triazole-4-carbohydrazide, C19H19N5O2
  44. Crystal structure and molecular packing of O-ethyl (2-chlorophenyl)carbamothioate, C9H10ClNOS
  45. Crystal structure of pyrene-2-carbaldehyde, C17H10O
  46. Crystal structure of (E)-2,4-diiodo-6-(4-methyl-2-nitrostyryl)phenol, C14H10I2N2O3
  47. Crystal structure of (E)-2,4-dichloro-6-(((4-methoxy-2-nitrophenyl)imino)methyl)phenol, C14H10Cl2N2O4
  48. Crystal structure of (E)-2-bromo-4-chloro-6-(4-methoxy-2-nitrostyryl)phenol, C14H10BrClN2O4
  49. Crystal structure of (E)-4,6-diiodo-2-(((4-methoxy-2-nitrophenyl)imino)methyl)-3-methylphenol, C14H10I2N2O4
  50. The crystal structure of 7-bromo-1-cyclopropyl-8-methyl-4-oxo-1,4-dihydroquinoline-3-carboxylic acid an intermediate of the ozenoxacin synthesis, C14H12BrNO3
  51. Crystal structure of bis(N-(1-(pyrazin-2-yl)ethylidene)nicotinohydrazonato-κ3N,N′,O)copper(II) C24H20N10O2Cu
  52. Crystal structure of diaqua-dinitrato-k2O,O′((Z)-N-((E)-1-(pyrazin-2-yl)ethylidene)nicotinohydrazonato-k3N,N′,O)europium(II), C12H14N7O9Eu
  53. Crystal structure of ethyl 4-amino-5-(5-methyl-1-(4-tolyl)-1H-1,2,3-triazole-4-carbonyl)-2-(phenylamino)thiophene-3-carboxylate, C24H23N5O3S
  54. The crystal structure of acridin-10-ium2-carboxybenzoate, C21H15NO4
  55. The crystal structure of 3-((phenylamino)methylene)-1,5-dioxaspiro[5.5]undecane-2,4-dione, C16H17N1O4
  56. Crystal structure of 12-chloro-5,6,7,12-tetrahydrodibenzo[c,f][1,5]oxastibocine, C14H12ClOSb
  57. Crystal structure of 4-((1,3-dioxoisoindolin-2-yl)methyl)phenethyl 4-methylbenzenesulfonate, C24H21NO5S
  58. Crystal structure of 3-methyl-2,3-dihydro-2-thioxoquinazolin-4(1H)-one, C9H8N2OS
  59. Crystal structure of tert-butyl (2-(4-oxo-2-thioxo-1,4-dihydroquinazolin-3(2H)-yl)ethyl)carbamate, C15H19N3O3S
  60. Crystal structure of ethyl 5-formyl-3,4-dimethylpyrrole-2-carboxylate–1-(propan-2-ylidene)thiosemicarbazide (1/1), C14H22N4O3S
  61. Crystal structure of bis-(N′-(5-ethoxycarbonyl-3,4-dimethyl-pyrrol-2-yl-methylidene)-3-hydroxybenzohydrazide-κ2O,N)copper(II) – dimethylformamide (1/2), C40H50N8O10Cu
  62. Crystal structure of bis(acetato-κO)bis{2-((1H-tetrazol-1-yl)methyl)-1H-benzo[d]imidazole-κN}zinc(II), C22H22N12O4Zn
  63. Crystal structure of 4-phenyl-3-((4-phenyl-1H-1,2,3-triazol-1-yl)methyl)-1H-1,2,4-triazole-5(4H)-thione, C17H14N6S
  64. Crystal structure of (Z)-N-(4-nitrophenyl)-3-phenyl-3-(phenylamino)acrylamide, C21H17N3O3
  65. Crystal structure of 1,1′-(pentane-1,5-diyl)bis(3-methyl-1H-imidazol-3-ium)bis(hexafluorophosphate), C13H22F12N4P2
  66. Synthesis and crystal structure of bis(furan-2-ylmethanaminium)-catena-[bis(μ2-phthalato-κ2O:O′)cobalt(II)], C26H24CoN2O10
  67. Crystal structure of methyl (R)-4-(o-chlorobenzoyl)-1-thia-4-azaspiro[4.5]decane-3-carboxylate, C17H20ClNO3S
  68. Crystal structure of 2-[[4-[2-[4-(4-methoxyphenyl)-1-piperazinyl]ethyl]phenyl] methyl]-1H-isoindole-1,3(2H)-dione, C28H29N3O3
  69. The crystal structure of benzenaminium 5,7-dihydroxy-4-oxo-2-phenyl-4H-chromene-8-sulfonate hydrate, C21H19NO8S
  70. Crystal structure of semiconducting potassium poly[(μ2-tetraselenido-κ2Se1:Se4)(μ2-pentaselenido-κ1Se1:Se1)argentate(I)], K3AgSe9
  71. Crystal structure of 2-isopropyl-8-methyl-phenanthrene-3,4-dione, C18H16O2
  72. Crystal structure of 2-isopropyl-8,8-dimethyl-5,6,7,8-tetrahydrophenanthrene-3,4-dione, C19H22O2
  73. Crystal structure of (E)-2-(1-((2-aminophenyl)imino)ethyl)-4-bromophenol, C14H13BrN2O
  74. Crystal structure of 1,1-di(4-cyanophenyl)-2,2-diphenylethene, C28H18N2
  75. Crystal structure of bis(hydroxylamido-κ2O,N)-oxido(1H-pyrazole-3-carboxylato-κ2O,N)vanadium(V), C4H7N4O5V
  76. The crystal structure of In1.2B3O5.6(OH)1.4
  77. The crystal structure of chlorido(2-(1H-pyrazol-3-yl)phenolato-κ2N,O)(2-(1H-pyrazol-3-yl)phenol-κN)copper(II), C18H15ClCuN4O2
  78. Crystal structure of 1-heptylpyridazin-1-ium iodide, C11H19N2I
  79. The crystal structure of N-butylpyridinium bis(μ2-dichlorido)-tetrachloridodicopper(II), C18H28N2Cu2Cl6
  80. Crystal structure of 6-hydroxy-5-((2-hydroxy-6-oxocyclohex-1-en-1-yl)(4-methoxyphenyl)methyl)-1,3-dimethylpyrimidine-2,4(1H,3H)-dione, C20H22N2O6
  81. Crystal structure of bis(acetonitrile)-diaqua-dichloridoiron(II), C4H10Cl2N2O2Fe
Heruntergeladen am 2.10.2025 von https://www.degruyterbrill.com/document/doi/10.1515/ncrs-2018-0034/html
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