The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core

Michael Hucka; Frank T. Bergmann; Andreas Dräger; Stefan Hoops; Sarah M. Keating; Nicolas Le Novère; Chris J. Myers; Brett G. Olivier; Sven Sahle; James C. Schaff; Lucian P. Smith; Dagmar Waltemath; Darren J. Wilkinson

doi:10.1515/jib-2017-0081

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The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core

Michael Hucka , Frank T. Bergmann , Andreas Dräger , Stefan Hoops , Sarah M. Keating , Nicolas Le Novère , Chris J. Myers , Brett G. Olivier , Sven Sahle , James C. Schaff , Lucian P. Smith , Dagmar Waltemath and Darren J. Wilkinson

Published/Copyright: March 9, 2018

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From the journal Journal of Integrative Bioinformatics Volume 15 Issue 1

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Hucka, Michael, Bergmann, Frank T., Dräger, Andreas, Hoops, Stefan, Keating, Sarah M., Le Novère, Nicolas, Myers, Chris J., Olivier, Brett G., Sahle, Sven, Schaff, James C., Smith, Lucian P., Waltemath, Dagmar and Wilkinson, Darren J.. "The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core" Journal of Integrative Bioinformatics, vol. 15, no. 1, 2018, pp. 20170081. https://doi.org/10.1515/jib-2017-0081

Hucka, M., Bergmann, F., Dräger, A., Hoops, S., Keating, S., Le Novère, N., Myers, C., Olivier, B., Sahle, S., Schaff, J., Smith, L., Waltemath, D. & Wilkinson, D. (2018). The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core. Journal of Integrative Bioinformatics, 15(1), 20170081. https://doi.org/10.1515/jib-2017-0081

Hucka, M., Bergmann, F., Dräger, A., Hoops, S., Keating, S., Le Novère, N., Myers, C., Olivier, B., Sahle, S., Schaff, J., Smith, L., Waltemath, D. and Wilkinson, D. (2018) The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core. Journal of Integrative Bioinformatics, Vol. 15 (Issue 1), pp. 20170081. https://doi.org/10.1515/jib-2017-0081

Hucka, Michael, Bergmann, Frank T., Dräger, Andreas, Hoops, Stefan, Keating, Sarah M., Le Novère, Nicolas, Myers, Chris J., Olivier, Brett G., Sahle, Sven, Schaff, James C., Smith, Lucian P., Waltemath, Dagmar and Wilkinson, Darren J.. "The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core" Journal of Integrative Bioinformatics 15, no. 1 (2018): 20170081. https://doi.org/10.1515/jib-2017-0081

Hucka M, Bergmann F, Dräger A, Hoops S, Keating S, Le Novère N, Myers C, Olivier B, Sahle S, Schaff J, Smith L, Waltemath D, Wilkinson D. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core. Journal of Integrative Bioinformatics. 2018;15(1): 20170081. https://doi.org/10.1515/jib-2017-0081

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Received: 2017-12-19

Accepted: 2018-2-2

Published Online: 2018-3-9

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The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core
SBML Level 3 package: Multistate, Multicomponent and Multicompartment Species, Version 1, Release 1
SBML Level 3 package: Render, Version 1, Release 1
SBML Level 3 Package: Flux Balance Constraints version 2
Synthetic Biology Open Language (SBOL) Version 2.2.0
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0
Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)

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https://doi.org/10.1515/jib-2017-0081

Keywords for this article

SBML; modeling; computational biology; systems biology; standards

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Articles in the same Issue

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core
SBML Level 3 package: Multistate, Multicomponent and Multicompartment Species, Version 1, Release 1
SBML Level 3 package: Render, Version 1, Release 1
SBML Level 3 Package: Flux Balance Constraints version 2
Synthetic Biology Open Language (SBOL) Version 2.2.0
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0
Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)