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Synthesis and antimicrobial evaluation of 3-(4-arylthieno[2,3-d]pyrimidin-2-yl)- 2H-chromen-2-ones

  • Sergiy V. Vlasov EMAIL logo , Sergiy M. Kovalenko , Pavlo E. Shynkarenko , Konstantin Yu. Krolenko and Vitaliy S. Vlasov
Published/Copyright: June 23, 2018
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Heterocyclic Communications
From the journal Heterocyclic Communications Volume 24 Issue 4

Abstract

Syntheses of 3-(4-arylthieno[2,3-d]pyrimidin-2-yl)-2H-chromen-2-ones 5 by the reaction of 2-iminocoumarin-3-carboxamides 1 with (2-aminothiophen-3-yl)(aryl)methanones 2 and by the alternative Suzuki coupling of 4-chlorothieno[2,3-d]pyrimidin-2-yl-2H-chromen-2-one 7 with arylboronic acids were developed. Compound 5d showed higher antimicrobial activity against Staphylococcus aureus than the reference drug streptomycin.

Keywords: arylation; coumarin; coupling; rearrangement; thiophene

Introduction

4-Arylthieno[2,3-d]pyrimidines have been studied as adenosine receptor modulators [1], agonists of luteinizing hormone (LH) and follicle-stimulating hormone (FSH) receptors [2] and inhibitors of heat shock protein 90 (Hsp90) [3]. Some derivatives inhibit transforming growth factor (TGF)-β receptor kinase [4] and the IκB kinase (IKK)-β and/or tumor necrosis factor (TNF)-α receptor [5]. The effective approaches to the preparation of these compounds are the Thorpe reaction [2], [4], cyclization of 2-amino-3-aroylthiophenes [6], [7], arylation of thieno[2,3-d]pyrimidines by Suzuki coupling [8] or aluminum trichloride catalyzed reactions [9]. It is also known that coumarins modified at position 3 with heterocyclic fragments display antimicrobial properties [10], [11], [12]. Earlier, the ‘recyclization’ reactions of 2-aminobenzophenones with 2-iminocoumarin-3-carboxamides were reported as an easy one-step method for the preparation of 3-(4-arylquinazolin-2-yl)-2H-chromen-2-ones [13] as well as the preparation of 2-(2-oxo(imino)-2H-chromen-3-yl)thieno[2,3-d]pyrimidin-4(3H)-ones using the methods of ‘recyclization’ of 2-iminocoumarins [14], [15], [16], [17]. The reaction of 2-iminocoumarin-3-carboxamides 1 with (2-aminothiophen-3-yl)(aryl)methanones 2 has never been studied before.

Results and discussion

We studied the reaction of compounds 1 with compounds 2 as the way for synthesis of compounds 5 (Scheme 1). The previous studies showed the effectiveness of such a two-step procedure for the preparation of similar compounds [15], [16], [17]. Thus, heating a mixture of compounds 1a and 2a at 50–60°C in glacial acetic acid (method A) furnished the intermediate compound 3, albeit in a low yield and with insufficient purity. Analysis of the liquid chromatography/mass spectrometry (LC/MS) data of the crude mixture suggested that the major product 3 was contaminated with compounds 2a (Ar=Ph), 4 and 5a.

Scheme 1 Synthesis of 3-(4-arylthieno[2,3-d]pyrimidin-2-yl)-2H-chromen-2-ones 5.
Scheme 1

Synthesis of 3-(4-arylthieno[2,3-d]pyrimidin-2-yl)-2H-chromen-2-ones 5.

Attempts to rearrange compounds 3 to 5 by heating in dimethylformamide (DMF) failed. The use of glacial acetic acid (8 h of boiling) for the attempted rearrangement of 3 gave traces of compound 5a. However, heating of the crude product 3 in glacial acetic acid in the presence of ammonium acetate for 3 h furnished the desired product 5a in a yield of 18%. For the synthesis of compounds 5, heating of equimolar amounts of compounds 1 and 2 in glacial acetic acid (method B) was also tried. Products 5 were isolated in yields of 61–82% after quenching the mixture with cold water followed by crystallization of the resultant precipitate from ethanol. In the third experiment (method C), product 5e was obtained by a Suzuki coupling of compound 7 with 4-methoxyphenylboronic acid, which had been prepared from the available intermediate 6 [15], [16] by treatment with POCl3 (method C). The Suzuki reaction proceeded slowly and required 12 h for completion. The target compound 5e was isolated in a 45% yield after chromatographic purification. In comparison, method B is the most convenient way of obtaining 3-(4-arylthieno[2,3-d]pyrimidin-2-yl)-2H-chromen-2-ones 5.

The antimicrobial activity of compounds 5 at a concentration of 100 μg/mL in dimethyl sulfoxide (DMSO) solution against the Staphylococcus aureus (ATCC 25923) strain was investigated using the agar well diffusion assay [18], [19]. It was found that compounds 5a–c, e show antimicrobial activity that is comparable to the activity of the reference drug streptomycin under similar conditions. However, compound 5d displays activity against the strain S. aureus that exceeds the activity of streptomycin at a concentration of 100 μg/mL.

Conclusions

New approaches to the synthesis of 3-(4-arylthieno[2,3-d]pyrimidin-2-yl)-2H-chromen-2-ones 5 were studied. It was found that ‘recyclization’ of 2-iminocoumarin-3-carboxamides in reaction with (2-amino-4,5,6,7-tetrahydro-1-benzothiophen-3-yl)(aryl)methanones (method B) is the most expedient synthetic route. Products 5 show antimicrobial activity against S. aureus (ATCC 25923). Compound 5d exhibits higher antimicrobial activity than the reference drug streptomycin.

Experimental

2-Iminocoumarin-3-carboxamides 1a–e, (2-amino-4,5,6,7-tetrahydro-1-benzothiophen-3-yl)(aryl)methanones 2a,b and 2-(8-methoxy-2-oxo-2H-chromen-3-yl)-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-4(3H)-one 6 were prepared according to the previously reported methods [15], [20], [21]. The antimicrobial activity of compounds 5 was tested using the agar well diffusion method [18], [19].

3-(4-Chloro-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-2-yl)-8-methoxy-2H-chromen-2-one (7)

To 2.0 g (5.2 mmol) of 2-(8-methoxy-2-oxo-2H-chromen-3-yl)-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-4(3H)-one (6) was added 10.0 mL of phosphorus oxychloride, and the mixture was stirred under reflux for 5 h. The excess of POCl3 was distilled off and the residue was treated with ice-cold water. The resultant precipitate was filtered off, washed with ethanol and then with hexanes.

Compound 7 was obtained in a 79% yield as a yellow powder; mp 123–124°C; 1H NMR (400 MHz, CDCl3): 1.91 (m, 4H, CH2CH2); 2.88 (m, 2H, CH2); 3.09 (m, 2H, CH2); 3.96 (s, 3H, OCH3); 7.09–7.24 (m, 3H, Ar-H); 8.58 (s, 1H, CH); 13C NMR (100 MHz, CDCl3): δ 22.2, 22.4, 26.1, 26.2, 56.3, 114.6, 119.5, 120.2, 124.4, 124.6, 127.1, 127.3, 140.7, 144.2, 145.4, 147.0, 153.0, 155.0, 157.7, 169.2; IR (KBr): ν 2938, 2840, 1743, 1678, 1608, 1558, 1560, 1537, 1479, 1438, 1418, 1349, 1301 cm−1; LC-MS: m/z 399 [M+H]+. Anal. Calcd for C20H15ClN2O3S: C, 60.23; H, 3.79; N, 7.02. Found: C, 60.35; H, 3.88; N, 7.21.

3-[4-Aryl-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-2-yl]-2H-chromen-2-ones (5)

Method A

A mixture of 2-iminocoumarin-3-carboxamide 1a (0.3 g, 1.6 mmol), 2-amino-4,5,6,7-tetrahydro-1-benzothiophen-3-yl)(phenyl)methanone 2a (0.41 g, 1.6 mmol) and 7 mL of glacial acetic acid was stirred at 50–60°C for 3 h and then cooled. The resultant precipitate of 3 was filtered off and washed with ethanol. To 0.25 g of the crude product 3, 0.33 g (4.3 mmol) of ammonium acetate and 10 mL of glacial acetic acid were added, and the mixture was heated under reflux for 3 h. After cooling, the mixture was diluted with water and the resultant precipitate of 5 was filtered off, washed with water and dried.

Method B (general method)

A mixture of 2-iminocoumarin-3-carboxamide 1 (1.6 mmol), 2-amino-4,5,6,7-tetrahydro-1-benzothiophen-3-yl)(aryl)methanone 2 (1.6 mmol) and 15 mL of glacial acetic acid was heated under reflux for 3–4 h. The product 5 precipitated after the dilution with cold water (up to 50 mL). The precipitate of compound 5 was filtered off, dried and crystallized from ethanol.

3-(4-Phenyl-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-2-yl)-2H-chromen-2-one (5a)

This compound was obtained in a 18% yield (method A) and a 72% yield (method B) as a yellow powder; mp 220–221°C; 1H NMR (200 MHz, DMSO-d6): δ 1.59 (m, 2H, CH2); 1.79 (m, 2H, CH2); 2.10 (m, 2H, CH2); 2.90 (m, 2H, CH2); 7.36–7.61 (m, 8H, Ar-H); 7.90 (d, 1H, J=7.6 Hz, Ar-H); 8.72 (m, 1H, CH); 13C NMR (125 MHz, DMSO-d6): δ 22.3, 22.5, 26.0, 27.0, 116.4, 116.5, 119.2, 125.1, 125.4, 127.1, 127.6, 128.3, 129.6, 129.8, 129.9, 130.7, 133.3, 138.5, 139.5, 145.2, 154.2, 155.1, 158.1, 160.9, 168.8; IR (KBr): ν 3050, 2940, 2860, 2837, 1738, 1606, 1558, 1524, 1508, 1492, 1458, 1443, 1434, 1408, 1360, 1348, 1306 cm−1; LC-MS: m/z 411 [M+H]+. Anal. Calcd for C25H18N2O2S: C, 73.15; H, 4.42; N, 6.82. Found: C, 73.26; H, 4.58; N, 6.90.

6-Chloro-3-(4-phenyl-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-2-yl)-2H-chromen-2-one (5b)

This compound was obtained in a 68% yield (method B) as a yellow powder; mp 203–204°C; 1H NMR (200 MHz, DMSO-d6): δ 1.58 (m, 2H, CH2); 1.80 (m, 2H, CH2); 2.09 (m, 2H, CH2); 2.89 (m, 2H, CH2); 7.44–7.70 (m, 7H, Ar-H); 8.01 (d, 1H, J=2.1 Hz, Ar-H); 8.69 (s, 1H, CH); 13C NMR (125 MHz, DMSO-d6): δ 22.3, 22.5, 26.0, 27.0, 118.3, 120.5, 126.2, 127.1, 127.5, 128.3, 128.7, 128.8, 129.6, 129.8, 132.7, 138.5, 139.7, 144.0, 152.8, 154.6, 157.5, 160.8, 168.7; IR (KBr): ν 3056, 2931, 2857, 1755, 1606, 1560, 1518, 1489, 1444, 1430, 1399, 1360, 1301 cm−1; LC-MS: m/z 445 [M+H]+. Anal. Calcd for C25H17ClN2O2S: C, 67.49; H, 3.85; N, 6.30. Found: C, 67.71; H, 3.89; N, 6.50.

6-Bromo-3-[4-(4-methoxyphenyl)-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-2-yl]-2H-chromen-2-one (5c)

This compound was obtained in a 61% yield (method B) as a yellow powder; mp 253–254°C; 1H NMR (200 MHz, DMSO-d6): δ 1.63 (m, 2H, CH2); 1.84 (m, 2H, CH2); 2.22 (m, 2H, CH2); 2.91 (m, 2H, CH2); 3.86 (s, 3H, OCH3); 7.08 (d, 2H, J=8.8 Hz, H-3′, H-5′); 7.40 (d, 1H, J=8.8 Hz, H-8); 7.55 (d, 2H, J=8.8 Hz, H-2′, H-6′); 7.77 (dd, 1H, J1=8.8 Hz, J2=2.4 Hz, H-7); 8.15 (d, 1H, J=2.4 Hz, H-5); 8.67 (s, 1H); 13C NMR (125 MHz, DMSO-d6): δ 22.4, 22.5, 26.1, 27.3, 55.7, 113.7, 116.6, 118.6, 121.1, 126.3, 127.1, 127.7, 130.8, 131.4, 131.7, 135.4, 139.3, 143.8, 153.2, 154.7, 157.5, 160.5, 160.7, 168.8; IR (KBr): ν 3072, 2936, 2837, 1743, 1608, 1557, 1494, 1427, 1396, 1360, 1331, 1298 cm−1; LC-MS: m/z 521 [M+H]+. Anal. Calcd for C26H19BrN2O3S: C, 60.12; H, 3.69; N, 5.39. Found: C, 60.17; H, 3.88; N, 5.34.

7-Methoxy-3-[4-(4-methoxyphenyl)-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-2-yl]-2H-chromen-2-one (5d)

This compound was obtained in a 82% yield (method B) as a yellow powder; mp 199–200°C; 1H NMR (200 MHz, DMSO-d6): δ 1.62 (m, 2H, CH2); 1.80 (m, 2H, CH2); 2.10 (m, 2H, CH2); 2.90 (m, 2H, CH2); 3.83 (s, 3H, OCH3); 3.87 (s, 3H, OCH3); 6.98 (dd, 1H, J1=8.8 Hz, J2=2.4 Hz, 6-H); 7.04–7.10 (m, 3H, H-3′, H-5′, H-8); 7.56 (d, 2H, J=8.8 Hz, H-2′, H-6′); 7.81 (d, 1H, J=8.8 Hz, H-5); 8.70 (s, 1H); 13C NMR (75 MHz, DMSO-d6): δ 22.4, 22.5, 26.0, 27.3, 55.7, 56.5, 100.7, 112.8, 113.3, 113.7, 121.7, 126.8, 127.7, 131.0, 131.3, 138.7, 145.4, 155.4, 156.3, 158.3, 160.6, 160.7, 163.8, 168.8; IR (KBr): ν 3066, 2933, 2902, 2860, 2838, 1746, 1607, 1578, 1561, 1508, 1496, 1462, 1439, 1404, 1385, 1352, 1303 cm−1; LC-MS: m/z 471 [M+H]+. Anal. Calcd for C27H22N2O4S: C, 68.92; H, 4.71; N, 5.95. Found: C, 68.95; H, 4.89; N, 5.97.

8-Methoxy-3-[4-(4-methoxyphenyl)-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-2-yl]-2H-chromen-2-one (5e)

Method C

A mixture of compound 7 (1.0 g, 2.51 mmol), 4-methoxyphenylboronic acid (0.42 g, 2.76 mmol), potassium carbonate (1.56 g, 11.28 mmol) and Pd(dppf)Cl2 (0.041 g, 0.05 mmol) in a mixed solvent of 1,4-dioxane/H2O (40 mL, 6:1) was stirred at 90°C for 12 h. The reaction progress was monitored by thin-layer chromatography (TLC) eluting with ethyl acetate/hexanes, 1:1, and using ultraviolet (UV) detection at 365 nm. The mixture was quenched with water and extracted with chloroform (3×50 mL). The combined extracts were dried over Na2SO4 and concentrated under reduced pressure, and the residue was subjected to silica gel chromatography eluting with CHCl3/MeOH (95:5–90:10). Compound 5e was obtained in a 74% yield (method B) and a 45% yield (method C) as a yellow powder; mp 236–237°C (method B); mp 237–238°C (method C); 1H NMR (400 MHz, CDCl3): δ 1.64 (m, 2H, CH2); 1.87 (m, 2H, CH2); 2.21 (m, 2H, CH2); 2.88 (m, 2H, CH2); 3.86 (s, 3H, OCH3); 3.94 (s, 3H, OCH3); 6.99 (d, 2H, J=8.1 Hz, H-3′, H-5′); 7.05–7.19 (m, 3H, Ar-H); 7.52 (d, 2H, J=8.8 Hz, H-2′, H-6′); 8.50 (s, 1H); 13C NMR (100 MHz, CDCl3): δ 22.5, 22.6, 26.2, 27.3, 55.4, 56.3, 113.4, 114.2, 119.8, 120.1, 124.2, 126.4, 127.4, 130.8, 131.1, 139.3, 144.0, 144.5, 146.9, 154.8, 158.4, 160.4, 160.6, 169.4; IR (KBr): ν 3078, 2942, 2906, 2838, 1742, 1608, 1576, 1557, 1514, 1497, 1479, 1436, 1404, 1387, 1341, 1303 cm−1; LC-MS: m/z 471 [M+H]+. Anal. Calcd for C27H22N2O4S: C, 68.92; H, 4.71; N, 5.95. Found: C, 68.99; H, 4.86; N, 6.07.

Acknowledgments

The authors gratefully acknowledge the Head of Microorganism Biochemistry and Biotechnology Laboratory of the NAMS Institute of Microbiology and Immunology of Ukraine and Dr. Tatyana P. Osolodchenko for conducting the microbiological experiment.

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Received: 2018-01-21
Accepted: 2018-05-04
Published Online: 2018-06-23
Published in Print: 2018-08-28

©2018 Walter de Gruyter GmbH, Berlin/Boston

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  2. Research Articles
  3. Synthesis of benzofuro[3,2-b]furo[2,3-d]pyridin-4(5H)-ones, derivatives of a novel heterocyclic system
  4. Reactions of 3H-furan-2-ones and 2H-chromen-2-ones with pyrazole-3(5)-diazonium salts
  5. Synthesis of 1,4-oxathian-2-ones by triton B-catalyzed one-pot reaction of epoxides with ethyl mercaptoacetate
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  12. Synthesis and antimicrobial evaluation of 3-(4-arylthieno[2,3-d]pyrimidin-2-yl)- 2H-chromen-2-ones
  13. Corrigendum
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https://doi.org/10.1515/hc-2018-0013
Keywords for this article
arylation; coumarin; coupling; rearrangement; thiophene
Creative Commons
BY-NC-ND 3.0

Articles in the same Issue

  1. Frontmatter
  2. Research Articles
  3. Synthesis of benzofuro[3,2-b]furo[2,3-d]pyridin-4(5H)-ones, derivatives of a novel heterocyclic system
  4. Reactions of 3H-furan-2-ones and 2H-chromen-2-ones with pyrazole-3(5)-diazonium salts
  5. Synthesis of 1,4-oxathian-2-ones by triton B-catalyzed one-pot reaction of epoxides with ethyl mercaptoacetate
  6. The regioselective catalyst-free synthesis of bis-quinoxalines and bis-pyrido[2,3-b]pyrazines by double condensation of 1,4-phenylene-bis-glyoxal with 1,2-diamines
  7. [1,3]Thiazolo[3,2-b][1,2,4]triazol-7-ium salts: synthesis, properties and structural studies
  8. Crystal structure and molecular docking studies of 1,2,4,5-tetraaryl substituted imidazoles
  9. Design, synthesis and cytotoxicity evaluation of indibulin analogs
  10. Synthesis of dibenzothiazepine analogues by one-pot S-arylation and intramolecular cyclization of diaryl sulfides and evaluation of antibacterial properties
  11. Synthesis and preliminary anti-inflammatory evaluation of xanthone derivatives
  12. Synthesis and antimicrobial evaluation of 3-(4-arylthieno[2,3-d]pyrimidin-2-yl)- 2H-chromen-2-ones
  13. Corrigendum
  14. Corrigendum to: Diversity-oriented synthesis of amide derivatives of tricyclic thieno[2,3-d]pyrimidin-4(3H)-ones and evaluation of their influence on melanin synthesis in murine B16 cells
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